data_F4O
#
_chem_comp.id F4O
_chem_comp.name "6-methoxy-streptovaricin C"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H53 N O14"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-24
_chem_comp.pdbx_modified_date 2020-08-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 771.847
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code F4O
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6M4P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F4O C01 C1 C 0 1 N N N N N N 1.508 0.141 -11.532 0.424 -4.013 -1.355 C01 F4O 1
F4O CAA C2 C 0 1 Y N N N N N -3.203 -2.246 -8.729 5.172 1.335 1.678 CAA F4O 2
F4O CAB C3 C 0 1 Y N N N N N -3.207 -1.127 -9.586 4.941 0.141 0.945 CAB F4O 3
F4O CAC C4 C 0 1 Y N N N N N -2.781 0.067 -9.105 3.838 -0.058 0.121 CAC F4O 4
F4O CAD C5 C 0 1 Y N N N N N -2.294 0.246 -7.862 2.871 1.076 0.054 CAD F4O 5
F4O CAE C6 C 0 1 Y N N N N N -2.272 -0.849 -6.955 3.132 2.256 0.730 CAE F4O 6
F4O CAF C7 C 0 1 Y N N N N N -2.739 -2.071 -7.432 4.284 2.472 1.474 CAF F4O 7
F4O CAG C8 C 0 1 Y N N N N N -1.736 1.403 -7.038 1.697 0.942 -0.744 CAG F4O 8
F4O CAH C9 C 0 1 Y N N N N N -1.363 1.184 -5.661 0.849 1.932 -0.919 CAH F4O 9
F4O CAI C10 C 0 1 Y N N N N N -1.347 0.110 -4.854 1.050 3.162 -0.266 CAI F4O 10
F4O CAJ C11 C 0 1 Y N N N N N -1.834 -0.813 -5.647 2.153 3.329 0.560 CAJ F4O 11
F4O CAM C12 C 0 1 N N N N N N -0.838 2.461 -5.020 -0.382 1.666 -1.692 CAM F4O 12
F4O CAO C13 C 0 1 N N N N N N -3.710 -3.602 -9.218 6.364 1.474 2.475 CAO F4O 13
F4O CAQ C14 C 0 1 N N N N N N -2.677 1.314 -9.987 3.710 -1.237 -0.560 CAQ F4O 14
F4O CAR C15 C 0 1 N N N N N N -1.209 1.570 -10.362 2.902 -2.483 -0.411 CAR F4O 15
F4O CAT C16 C 0 1 N N N N N N -0.283 0.627 -9.998 1.796 -2.547 0.109 CAT F4O 16
F4O CAU C17 C 0 1 N N R N N N 1.297 0.585 -10.246 0.816 -3.751 0.017 CAU F4O 17
F4O CAV C18 C 0 1 N N N N N N -0.801 2.791 -11.087 3.602 -3.768 -1.035 CAV F4O 18
F4O CAW C19 C 0 1 N N S N N N 1.998 -0.414 -9.261 -0.367 -3.462 0.992 CAW F4O 19
F4O CAX C20 C 0 1 N N N N N N -2.649 -1.319 -11.738 6.940 -0.856 0.238 CAX F4O 20
F4O CAY C21 C 0 1 N N N N N N -1.264 0.698 -2.226 -0.986 4.365 -0.724 CAY F4O 21
F4O CBA C22 C 0 1 N N N N N N -0.425 0.451 -0.978 -2.151 4.407 0.029 CBA F4O 22
F4O CBB C23 C 0 1 N N N N N N 0.881 0.313 -1.287 -3.377 4.033 -0.520 CBB F4O 23
F4O CBC C24 C 0 1 N N N N N N -1.057 0.422 0.389 -2.153 4.789 1.487 CBC F4O 24
F4O CBD C25 C 0 1 N N N N N N 2.052 0.040 -0.345 -4.610 4.107 0.166 CBD F4O 25
F4O CBE C26 C 0 1 N N N N N N 3.312 -0.119 -0.702 -5.327 3.005 0.495 CBE F4O 26
F4O CBF C27 C 0 1 N N R N N N 3.824 -0.043 -2.124 -4.811 1.683 0.158 CBF F4O 27
F4O CBG C28 C 0 1 N N R N N N 4.732 -1.215 -2.499 -5.782 0.610 0.467 CBG F4O 28
F4O CBH C29 C 0 1 N N R N N N 5.532 -1.001 -3.780 -5.549 -0.793 -0.026 CBH F4O 29
F4O CBI C30 C 0 1 N N R N N N 4.875 -1.369 -5.121 -4.652 -1.574 0.802 CBI F4O 30
F4O CBJ C31 C 0 1 N N R N N N 3.962 -0.353 -5.811 -3.523 -2.357 0.071 CBJ F4O 31
F4O CBK C32 C 0 1 N N R N N N 3.517 -0.793 -7.201 -2.858 -3.335 1.117 CBK F4O 32
F4O CBL C33 C 0 1 N N S N N N 2.456 0.073 -7.877 -1.704 -4.094 0.474 CBL F4O 33
F4O CBN C34 C 0 1 N N N N N N 1.287 0.256 -6.968 -1.717 -5.519 0.921 CBN F4O 34
F4O CBR C35 C 0 1 N N N N N N 4.609 1.238 -2.315 -3.558 1.433 0.904 CBR F4O 35
F4O CBS C36 C 0 1 N N N N N N 6.732 -1.938 -3.616 -5.182 -0.797 -1.575 CBS F4O 36
F4O CBX C37 C 0 1 N N N N N N -2.725 3.484 -7.659 2.011 -0.314 -2.672 CBX F4O 37
F4O CBY C38 C 0 1 N N N N N N -2.643 4.884 -8.251 1.916 -1.601 -3.450 CBY F4O 38
F4O CBZ C39 C 0 1 N N N N N N 4.529 1.053 -5.840 -2.398 -1.495 -0.391 CBZ F4O 39
F4O CCC C40 C 0 1 N N N N N N 6.026 1.170 -7.804 -0.830 -0.755 -2.026 CCC F4O 40
F4O NAN N1 N 0 1 N N N N N N -0.846 0.041 -3.462 0.250 4.248 -0.303 NAN F4O 41
F4O O01 O1 O 0 1 N N N N N N 1.699 -1.418 -9.307 -0.124 -4.022 2.263 O01 F4O 42
F4O O02 O2 O 0 1 N N N N N N 1.891 1.940 -10.248 1.483 -4.903 0.603 O02 F4O 43
F4O O03 O3 O 0 1 N N N N N N 4.168 -2.098 -2.582 -7.103 1.027 0.066 O03 F4O 44
F4O OAK O4 O 0 1 N N N N N N -2.739 -3.178 -6.632 4.509 3.565 2.133 OAK F4O 45
F4O OAL O5 O 0 1 N N N N N N -1.896 -1.973 -4.944 2.462 4.490 1.163 OAL F4O 46
F4O OAP O6 O 0 1 N N N N N N -3.674 -1.198 -10.862 5.832 -0.811 1.139 OAP F4O 47
F4O OAS O7 O 0 1 N N N N N N -3.536 1.968 -10.341 4.449 -1.324 -1.593 OAS F4O 48
F4O OAZ O8 O 0 1 N N N N N N -2.167 1.357 -2.225 -1.220 4.427 -1.965 OAZ F4O 49
F4O OBP O9 O 0 1 N N N N N N 4.541 -1.049 -8.067 -2.460 -2.620 2.302 OBP F4O 50
F4O OBQ O10 O 0 1 N N N N N N 4.247 -2.564 -4.956 -5.359 -2.492 1.625 OBQ F4O 51
F4O OBV O11 O 0 1 N N N N N N -1.610 2.657 -7.611 1.507 -0.242 -1.430 OBV F4O 52
F4O OBW O12 O 0 1 N N N N N N -3.711 3.120 -7.254 2.542 0.656 -3.168 OBW F4O 53
F4O OCA O13 O 0 1 N N N N N N 3.968 1.951 -5.340 -1.976 -0.617 0.325 OCA F4O 54
F4O OCB O14 O 0 1 N N N N N N 5.757 1.293 -6.418 -1.854 -1.693 -1.602 OCB F4O 55
F4O H1 H1 H 0 1 N N N N N N 1.098 -0.874 -11.642 1.316 -4.124 -1.973 H1 F4O 56
F4O H2 H2 H 0 1 N N N N N N 1.007 0.817 -12.240 -0.163 -4.930 -1.396 H2 F4O 57
F4O H3 H3 H 0 1 N N N N N N 2.588 0.125 -11.742 -0.174 -3.181 -1.727 H3 F4O 58
F4O H4 H4 H 0 1 N N N N N N -1.671 3.007 -4.554 -1.029 0.997 -1.125 H4 F4O 59
F4O H5 H5 H 0 1 N N N N N N -0.092 2.206 -4.253 -0.904 2.604 -1.879 H5 F4O 60
F4O H6 H6 H 0 1 N N N N N N -0.371 3.092 -5.790 -0.121 1.200 -2.643 H6 F4O 61
F4O H7 H7 H 0 1 N N N N N N -2.875 -4.172 -9.651 6.134 1.246 3.515 H7 F4O 62
F4O H8 H8 H 0 1 N N N N N N -4.136 -4.161 -8.372 7.126 0.785 2.111 H8 F4O 63
F4O H9 H9 H 0 1 N N N N N N -4.485 -3.449 -9.984 6.733 2.497 2.400 H9 F4O 64
F4O H10 H10 H 0 1 N N N N N N -0.682 -0.220 -9.460 1.372 -1.669 0.655 H10 F4O 65
F4O H11 H11 H 0 1 N N N N N N -1.686 3.414 -11.284 2.840 -4.484 -1.342 H11 F4O 66
F4O H12 H12 H 0 1 N N N N N N -0.083 3.357 -10.476 4.194 -3.474 -1.902 H12 F4O 67
F4O H13 H13 H 0 1 N N N N N N -0.330 2.511 -12.041 4.253 -4.226 -0.290 H13 F4O 68
F4O H14 H14 H 0 1 N N N N N N -3.046 -1.375 -12.762 6.575 -0.999 -0.779 H14 F4O 69
F4O H15 H15 H 0 1 N N N N N N -1.986 -0.446 -11.649 7.494 0.081 0.296 H15 F4O 70
F4O H16 H16 H 0 1 N N N N N N -2.082 -2.235 -11.514 7.596 -1.684 0.508 H16 F4O 71
F4O H17 H17 H 0 1 N N N N N N 1.130 0.408 -2.334 -3.444 3.769 -1.548 H17 F4O 72
F4O H18 H18 H 0 1 N N N N N N -0.283 0.231 1.147 -2.286 5.867 1.579 H18 F4O 73
F4O H19 H19 H 0 1 N N N N N N -1.537 1.391 0.591 -2.970 4.277 1.995 H19 F4O 74
F4O H20 H20 H 0 1 N N N N N N -1.812 -0.377 0.427 -1.205 4.499 1.939 H20 F4O 75
F4O H21 H21 H 0 1 N N N N N N 1.828 -0.029 0.709 -4.988 5.015 0.632 H21 F4O 76
F4O H22 H22 H 0 1 N N N N N N 4.031 -0.318 0.078 -6.331 3.078 0.923 H22 F4O 77
F4O H23 H23 H 0 1 N N N N N N 2.963 -0.035 -2.809 -4.559 1.629 -0.904 H23 F4O 78
F4O H24 H24 H 0 1 N N N N N N 5.481 -1.269 -1.695 -5.860 0.514 1.610 H24 F4O 79
F4O H25 H25 H 0 1 N N N N N N 5.885 0.040 -3.822 -6.545 -1.322 0.002 H25 F4O 80
F4O H26 H26 H 0 1 N N N N N N 5.710 -1.531 -5.818 -4.094 -0.890 1.498 H26 F4O 81
F4O H27 H27 H 0 1 N N N N N N 3.048 -0.302 -5.200 -3.980 -2.960 -0.763 H27 F4O 82
F4O H28 H28 H 0 1 N N N N N N 3.014 -1.757 -7.033 -3.598 -4.082 1.388 H28 F4O 83
F4O H29 H29 H 0 1 N N N N N N 2.907 1.065 -8.027 -1.838 -4.052 -0.593 H29 F4O 84
F4O H30 H30 H 0 1 N N N N N N 1.637 0.604 -5.985 -1.670 -5.559 2.009 H30 F4O 85
F4O H31 H31 H 0 1 N N N N N N 0.601 1.001 -7.398 -2.635 -5.999 0.580 H31 F4O 86
F4O H32 H32 H 0 1 N N N N N N 0.760 -0.702 -6.851 -0.857 -6.040 0.501 H32 F4O 87
F4O H33 H33 H 0 1 N N N N N N 3.977 2.099 -2.051 -3.658 1.814 1.921 H33 F4O 88
F4O H34 H34 H 0 1 N N N N N N 5.498 1.224 -1.667 -3.361 0.362 0.936 H34 F4O 89
F4O H35 H35 H 0 1 N N N N N N 4.923 1.322 -3.366 -2.731 1.940 0.406 H35 F4O 90
F4O H36 H36 H 0 1 N N N N N N 7.243 -1.718 -2.667 -4.225 -0.296 -1.724 H36 F4O 91
F4O H37 H37 H 0 1 N N N N N N 6.384 -2.982 -3.612 -5.113 -1.826 -1.929 H37 F4O 92
F4O H38 H38 H 0 1 N N N N N N 7.431 -1.788 -4.452 -5.957 -0.273 -2.134 H38 F4O 93
F4O H39 H39 H 0 1 N N N N N N -3.630 5.366 -8.191 1.370 -2.341 -2.864 H39 F4O 94
F4O H40 H40 H 0 1 N N N N N N -1.909 5.478 -7.687 1.391 -1.421 -4.388 H40 F4O 95
F4O H41 H41 H 0 1 N N N N N N -2.330 4.819 -9.304 2.919 -1.973 -3.660 H41 F4O 96
F4O H42 H42 H 0 1 N N N N N N 7.080 1.418 -7.997 -1.301 0.122 -2.470 H42 F4O 97
F4O H43 H43 H 0 1 N N N N N N 5.828 0.137 -8.126 -0.236 -0.451 -1.164 H43 F4O 98
F4O H44 H44 H 0 1 N N N N N N 5.378 1.859 -8.366 -0.183 -1.232 -2.763 H44 F4O 99
F4O H45 H45 H 0 1 N N N N N N -0.069 -0.577 -3.345 0.644 5.190 0.006 H45 F4O 100
F4O H46 H46 H 0 1 N N N N N N 1.791 2.331 -9.388 2.322 -5.130 0.179 H46 F4O 101
F4O H47 H47 H 0 1 N N N N N N 3.669 -2.232 -1.785 -7.413 1.829 0.508 H47 F4O 102
F4O H48 H48 H 0 1 N N N N N N -2.405 -2.948 -5.773 5.097 4.184 1.679 H48 F4O 103
F4O H49 H49 H 0 1 N N N N N N -1.571 -1.828 -4.063 2.973 5.097 0.609 H49 F4O 104
F4O H50 H50 H 0 1 N N N N N N 5.194 -1.588 -7.636 -3.191 -2.183 2.762 H50 F4O 105
F4O H51 H51 H 0 1 N N N N N N 4.835 -3.174 -4.527 -4.791 -3.031 2.192 H51 F4O 106
F4O H52 H52 H 0 1 N N N N N N 2.188 -1.924 -8.669 0.672 -3.685 2.696 H52 F4O 107
F4O H53 H53 H 0 1 N N N N N N 2.983 -0.445 -9.750 -0.503 -2.371 1.064 H53 F4O 108
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F4O CAX OAP SING N N 1
F4O C01 CAU SING N N 2
F4O CAV CAR SING N N 3
F4O OAP CAB SING N N 4
F4O CAR CAT DOUB N E 5
F4O CAR CAQ SING N N 6
F4O OAS CAQ DOUB N N 7
F4O O02 CAU SING N N 8
F4O CAU CAT SING N N 9
F4O CAU CAW SING N N 10
F4O CAQ CAC SING N N 11
F4O CAB CAC DOUB Y N 12
F4O CAB CAA SING Y N 13
F4O O01 CAW SING N N 14
F4O CAW CBL SING N N 15
F4O CAO CAA SING N N 16
F4O CAC CAD SING Y N 17
F4O CAA CAF DOUB Y N 18
F4O CBY CBX SING N N 19
F4O OBP CBK SING N N 20
F4O CBL CBK SING N N 21
F4O CBL CBN SING N N 22
F4O CAD CAG DOUB Y N 23
F4O CAD CAE SING Y N 24
F4O CCC OCB SING N N 25
F4O CBX OBV SING N N 26
F4O CBX OBW DOUB N N 27
F4O OBV CAG SING N N 28
F4O CAF CAE SING Y N 29
F4O CAF OAK SING N N 30
F4O CBK CBJ SING N N 31
F4O CAG CAH SING Y N 32
F4O CAE CAJ DOUB Y N 33
F4O OCB CBZ SING N N 34
F4O CBZ CBJ SING N N 35
F4O CBZ OCA DOUB N N 36
F4O CBJ CBI SING N N 37
F4O CAH CAM SING N N 38
F4O CAH CAI DOUB Y N 39
F4O CAJ OAL SING N N 40
F4O CAJ CAI SING Y N 41
F4O CBI OBQ SING N N 42
F4O CBI CBH SING N N 43
F4O CAI NAN SING N N 44
F4O CBH CBS SING N N 45
F4O CBH CBG SING N N 46
F4O NAN CAY SING N N 47
F4O O03 CBG SING N N 48
F4O CBG CBF SING N N 49
F4O CBR CBF SING N N 50
F4O CAY OAZ DOUB N N 51
F4O CAY CBA SING N N 52
F4O CBF CBE SING N N 53
F4O CBB CBA DOUB N E 54
F4O CBB CBD SING N N 55
F4O CBA CBC SING N N 56
F4O CBE CBD DOUB N Z 57
F4O C01 H1 SING N N 58
F4O C01 H2 SING N N 59
F4O C01 H3 SING N N 60
F4O CAM H4 SING N N 61
F4O CAM H5 SING N N 62
F4O CAM H6 SING N N 63
F4O CAO H7 SING N N 64
F4O CAO H8 SING N N 65
F4O CAO H9 SING N N 66
F4O CAT H10 SING N N 67
F4O CAV H11 SING N N 68
F4O CAV H12 SING N N 69
F4O CAV H13 SING N N 70
F4O CAX H14 SING N N 71
F4O CAX H15 SING N N 72
F4O CAX H16 SING N N 73
F4O CBB H17 SING N N 74
F4O CBC H18 SING N N 75
F4O CBC H19 SING N N 76
F4O CBC H20 SING N N 77
F4O CBD H21 SING N N 78
F4O CBE H22 SING N N 79
F4O CBF H23 SING N N 80
F4O CBG H24 SING N N 81
F4O CBH H25 SING N N 82
F4O CBI H26 SING N N 83
F4O CBJ H27 SING N N 84
F4O CBK H28 SING N N 85
F4O CBL H29 SING N N 86
F4O CBN H30 SING N N 87
F4O CBN H31 SING N N 88
F4O CBN H32 SING N N 89
F4O CBR H33 SING N N 90
F4O CBR H34 SING N N 91
F4O CBR H35 SING N N 92
F4O CBS H36 SING N N 93
F4O CBS H37 SING N N 94
F4O CBS H38 SING N N 95
F4O CBY H39 SING N N 96
F4O CBY H40 SING N N 97
F4O CBY H41 SING N N 98
F4O CCC H42 SING N N 99
F4O CCC H43 SING N N 100
F4O CCC H44 SING N N 101
F4O NAN H45 SING N N 102
F4O O02 H46 SING N N 103
F4O O03 H47 SING N N 104
F4O OAK H48 SING N N 105
F4O OAL H49 SING N N 106
F4O OBP H50 SING N N 107
F4O OBQ H51 SING N N 108
F4O O01 H52 SING N N 109
F4O CAW H53 SING N N 110
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F4O InChI InChI 1.03 InChI=1S/C40H53NO14/c1-16-13-12-14-17(2)38(50)41-28-19(4)36(55-23(8)42)24-25(34(28)48)32(46)21(6)35(53-10)26(24)30(44)18(3)15-40(9,52)37(49)22(7)33(47)27(39(51)54-11)31(45)20(5)29(16)43/h12-16,20,22,27,29,31,33,37,43,45-49,52H,1-11H3,(H,41,50)/b13-12-,17-14+,18-15+/t16-,20-,22+,27-,29-,31-,33-,37+,40-/m1/s1
F4O InChIKey InChI 1.03 KVBRXYBSUWPYTK-JYNZOJPESA-N
F4O SMILES_CANONICAL CACTVS 3.385 COC(=O)[C@@H]1[C@H](O)[C@H](C)[C@H](O)[C@H](C)/C=C\C=C(C)\C(=O)Nc2c(C)c(OC(C)=O)c3c(c(O)c(C)c(OC)c3C(=O)\C(=C\[C@@](C)(O)[C@@H](O)[C@@H](C)[C@H]1O)C)c2O
F4O SMILES CACTVS 3.385 COC(=O)[CH]1[CH](O)[CH](C)[CH](O)[CH](C)C=CC=C(C)C(=O)Nc2c(C)c(OC(C)=O)c3c(c(O)c(C)c(OC)c3C(=O)C(=C[C](C)(O)[CH](O)[CH](C)[CH]1O)C)c2O
F4O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1c2c(c3c(c1OC(=O)C)c(c(c(c3O)C)OC)C(=O)/C(=C/[C@@](C([C@H]([C@H]([C@@H]([C@@H]([C@@H]([C@@H]([C@@H](/C=C\C=C(\C(=O)N2)/C)C)O)C)O)C(=O)OC)O)C)O)(C)O)/C)O
F4O SMILES "OpenEye OEToolkits" 2.0.7 Cc1c2c(c3c(c1OC(=O)C)c(c(c(c3O)C)OC)C(=O)C(=CC(C(C(C(C(C(C(C(C(C=CC=C(C(=O)N2)C)C)O)C)O)C(=O)OC)O)C)O)(C)O)C)O
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F4O 'Create component' 2020-03-24 PDBJ
F4O 'Initial release' 2020-08-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
F4O C01 C -0.646 0.840 1
F4O CAA C -4.792 -5.274 2
F4O CAB C -4.795 -3.777 3
F4O CAC C -3.500 -3.030 4
F4O CAD C -2.206 -3.778 5
F4O CAE C -2.204 -5.273 6
F4O CAF C -3.501 -6.023 7
F4O CAG C -0.917 -3.042 8
F4O CAH C 0.364 -3.789 9
F4O CAI C 0.364 -5.270 10
F4O CAJ C -0.918 -6.019 11
F4O CAM C 1.109 -3.554 12
F4O CAO C -6.092 -6.024 13
F4O CAQ C -3.659 -1.373 14
F4O CAR C -2.486 -0.312 15
F4O CAT C -2.751 1.171 16
F4O CAU C -1.510 2.070 17
F4O CAV C -1.141 -0.679 18
F4O CAW C -1.593 3.584 19
F4O CAX C -7.391 -3.777 20
F4O CAY C 2.758 -3.760 21
F4O CBA C 4.162 -3.232 22
F4O CBB C 4.242 -1.621 23
F4O CBC C 5.369 -4.103 24
F4O CBD C 5.515 -0.775 25
F4O CBE C 5.429 0.817 26
F4O CBF C 4.062 1.577 27
F4O CBG C 3.996 3.139 28
F4O CBH C 2.621 3.840 29
F4O CBI C 2.534 5.500 30
F4O CBJ C 1.138 6.382 31
F4O CBK C -0.235 5.751 32
F4O CBL C -0.297 4.378 33
F4O CBN C 0.921 3.741 34
F4O CBR C 2.786 0.799 35
F4O CBS C 1.380 2.962 36
F4O CBX C 0.724 -0.875 37
F4O CBY C 0.713 0.624 38
F4O CBZ C 1.208 7.891 39
F4O CCC C 2.565 10.100 40
F4O NAN N 2.011 -5.527 41
F4O O01 O -2.918 4.278 42
F4O O02 O -0.009 2.176 43
F4O O03 O 5.260 3.957 44
F4O OAK O -3.500 -7.522 45
F4O OAL O -0.916 -7.517 46
F4O OAP O -6.092 -3.028 47
F4O OAS O -5.056 -0.829 48
F4O OAZ O 1.748 -2.714 49
F4O OBP O -1.480 6.587 50
F4O OBQ O 3.828 6.264 51
F4O OBV O -0.752 -1.654 52
F4O OBW O 2.090 -1.567 53
F4O OCA O -0.065 8.692 54
F4O OCB O 2.526 8.597 55
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
F4O CAX OAP SINGLE NONE 1
F4O CAU C01 SINGLE BEGINWEDGE 2
F4O CAV CAR SINGLE ENDUPRIGHT 3
F4O OAP CAB SINGLE NONE 4
F4O CAR CAT DOUBLE NONE 5
F4O CAR CAQ SINGLE ENDUPRIGHT 6
F4O OAS CAQ DOUBLE NONE 7
F4O O02 CAU SINGLE NONE 8
F4O CAU CAT SINGLE ENDUPRIGHT 9
F4O CAU CAW SINGLE NONE 10
F4O CAQ CAC SINGLE NONE 11
F4O CAB CAC SINGLE NONE 12
F4O CAB CAA DOUBLE NONE 13
F4O O01 CAW SINGLE NONE 14
F4O CAW CBL SINGLE NONE 15
F4O CAO CAA SINGLE NONE 16
F4O CAC CAD DOUBLE NONE 17
F4O CAA CAF SINGLE NONE 18
F4O CBY CBX SINGLE NONE 19
F4O OBP CBK SINGLE NONE 20
F4O CBL CBK SINGLE NONE 21
F4O CBL CBN SINGLE NONE 22
F4O CAD CAG SINGLE NONE 23
F4O CAD CAE SINGLE NONE 24
F4O CCC OCB SINGLE NONE 25
F4O CBX OBV SINGLE NONE 26
F4O CBX OBW DOUBLE NONE 27
F4O OBV CAG SINGLE NONE 28
F4O CAF CAE DOUBLE NONE 29
F4O CAF OAK SINGLE NONE 30
F4O CBK CBJ SINGLE NONE 31
F4O CAG CAH DOUBLE NONE 32
F4O CAE CAJ SINGLE NONE 33
F4O OCB CBZ SINGLE NONE 34
F4O CBZ CBJ SINGLE NONE 35
F4O CBZ OCA DOUBLE NONE 36
F4O CBJ CBI SINGLE NONE 37
F4O CAH CAM SINGLE NONE 38
F4O CAH CAI SINGLE NONE 39
F4O CAJ OAL SINGLE NONE 40
F4O CAJ CAI DOUBLE NONE 41
F4O CBI OBQ SINGLE NONE 42
F4O CBI CBH SINGLE NONE 43
F4O CAI NAN SINGLE NONE 44
F4O CBH CBS SINGLE NONE 45
F4O CBH CBG SINGLE NONE 46
F4O NAN CAY SINGLE NONE 47
F4O O03 CBG SINGLE NONE 48
F4O CBG CBF SINGLE NONE 49
F4O CBR CBF SINGLE NONE 50
F4O CAY OAZ DOUBLE NONE 51
F4O CAY CBA SINGLE ENDUPRIGHT 52
F4O CBF CBE SINGLE ENDUPRIGHT 53
F4O CBB CBA DOUBLE NONE 54
F4O CBB CBD SINGLE ENDUPRIGHT 55
F4O CBA CBC SINGLE ENDUPRIGHT 56
F4O CBE CBD DOUBLE NONE 57
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
F4O MurckoScaffold S1 scaffold O=C1/C=C/C=C\CCCCCCCCC/C=C/C(=O)c2cccc3cc(ccc23)N1 InChI=1S/C27H31NO2/c29-26-17-12-10-8-6-4-2-1-3-5-7-9-11-13-18-27(30)28-23-19-20-24-22(21-23)15-14-16-25(24)26/h9,11-21H,1-8,10H2,(H,28,30)/b11-9-,17-12+,18-13+ IBPKKJZDOQOWFU-JXOQNGCOSA-N
F4O amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
F4O napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
F4O phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
F4O Z54462534 F4 fragment CCC(=O)c1ccccc1OC InChI=1S/C10H12O2/c1-3-9(11)8-6-4-5-7-10(8)12-2/h4-7H,3H2,1-2H3 LEAJWPFHMHVEKV-UHFFFAOYSA-N
F4O Z57040482 F5 fragment CC(=O)Nc1ccccc1O InChI=1S/C8H9NO2/c1-6(10)9-7-4-2-3-5-8(7)11/h2-5,11H,1H3,(H,9,10) ADVGKWPZRIDURE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
F4O CAA S1 1
F4O CAB S1 1
F4O CAC S1 1
F4O CAD S1 1
F4O CAE S1 1
F4O CAF S1 1
F4O CAG S1 1
F4O CAH S1 1
F4O CAI S1 1
F4O CAJ S1 1
F4O CAQ S1 1
F4O CAR S1 1
F4O CAT S1 1
F4O CAU S1 1
F4O CAW S1 1
F4O CAY S1 1
F4O CBA S1 1
F4O CBB S1 1
F4O CBD S1 1
F4O CBE S1 1
F4O CBF S1 1
F4O CBG S1 1
F4O CBH S1 1
F4O CBI S1 1
F4O CBJ S1 1
F4O CBK S1 1
F4O CBL S1 1
F4O NAN S1 1
F4O OAS S1 1
F4O OAZ S1 1
F4O NAN F1 1
F4O CAY F1 1
F4O OAZ F1 1
F4O CBA F1 1
F4O CAA F2 1
F4O CAB F2 1
F4O CAC F2 1
F4O CAD F2 1
F4O CAE F2 1
F4O CAF F2 1
F4O CAJ F2 1
F4O CAI F2 1
F4O CAH F2 1
F4O CAG F2 1
F4O CAA F3 1
F4O CAB F3 1
F4O CAC F3 1
F4O CAD F3 1
F4O CAE F3 1
F4O CAF F3 1
F4O CAD F3 2
F4O CAG F3 2
F4O CAH F3 2
F4O CAI F3 2
F4O CAJ F3 2
F4O CAE F3 2
F4O CAV F4 1
F4O CAR F4 1
F4O CAQ F4 1
F4O OAS F4 1
F4O CAC F4 1
F4O CAD F4 1
F4O CAE F4 1
F4O CAF F4 1
F4O CAA F4 1
F4O CAB F4 1
F4O OAP F4 1
F4O CAX F4 1
F4O CBA F5 1
F4O CAY F5 1
F4O OAZ F5 1
F4O NAN F5 1
F4O CAI F5 1
F4O CAH F5 1
F4O CAG F5 1
F4O CAD F5 1
F4O CAE F5 1
F4O CAJ F5 1
F4O OAL F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id F4O
_pdbe_chem_comp_rdkit_properties.exactmw 771.347
_pdbe_chem_comp_rdkit_properties.amw 771.857
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 55
_pdbe_chem_comp_rdkit_properties.NumAtoms 108
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 394.211
_pdbe_chem_comp_rdkit_properties.tpsa 249.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.455
_pdbe_chem_comp_rdkit_properties.CrippenMR 195.608
_pdbe_chem_comp_rdkit_properties.chi0v 26.163
_pdbe_chem_comp_rdkit_properties.chi1v 13.417
_pdbe_chem_comp_rdkit_properties.chi2v 6.602
_pdbe_chem_comp_rdkit_properties.chi3v 6.602
_pdbe_chem_comp_rdkit_properties.chi4v 4.169
_pdbe_chem_comp_rdkit_properties.chi0n 79.163
_pdbe_chem_comp_rdkit_properties.chi1n 39.222
_pdbe_chem_comp_rdkit_properties.chi2n 6.602
_pdbe_chem_comp_rdkit_properties.chi3n 6.602
_pdbe_chem_comp_rdkit_properties.chi4n 4.169
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.800
_pdbe_chem_comp_rdkit_properties.kappa1 10.980
_pdbe_chem_comp_rdkit_properties.kappa2 17.336
_pdbe_chem_comp_rdkit_properties.kappa3 8.707
_pdbe_chem_comp_rdkit_properties.Phi 3.461
#
_pdbe_chem_comp_external_mappings.comp_id F4O
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id F4O
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
F4O C01 1.399 -1.985 -3.390 ETKDGv3 1
F4O CAA 1.082 -1.066 3.557 ETKDGv3 2
F4O CAB 1.531 -2.135 2.874 ETKDGv3 3
F4O CAC 2.209 -1.961 1.564 ETKDGv3 4
F4O CAD 2.489 -0.708 1.106 ETKDGv3 5
F4O CAE 1.986 0.477 1.862 ETKDGv3 6
F4O CAF 1.226 0.293 2.967 ETKDGv3 7
F4O CAG 3.235 -0.446 -0.163 ETKDGv3 8
F4O CAH 3.236 0.787 -0.713 ETKDGv3 9
F4O CAI 2.773 1.973 0.063 ETKDGv3 10
F4O CAJ 2.288 1.835 1.314 ETKDGv3 11
F4O CAM 3.825 1.011 -2.086 ETKDGv3 12
F4O CAO 0.400 -1.234 4.893 ETKDGv3 13
F4O CAQ 2.517 -3.198 0.804 ETKDGv3 14
F4O CAR 1.979 -3.464 -0.566 ETKDGv3 15
F4O CAT 0.956 -2.714 -1.052 ETKDGv3 16
F4O CAU 0.413 -2.738 -2.481 ETKDGv3 17
F4O CAV 2.578 -4.621 -1.336 ETKDGv3 18
F4O CAW -1.030 -2.110 -2.556 ETKDGv3 19
F4O CAX 0.235 -4.216 3.081 ETKDGv3 20
F4O CAY 2.233 4.428 -0.335 ETKDGv3 21
F4O CBA 0.757 4.325 -0.478 ETKDGv3 22
F4O CBB -0.017 5.254 0.118 ETKDGv3 23
F4O CBC 0.182 3.231 -1.343 ETKDGv3 24
F4O CBD -1.465 5.418 -0.091 ETKDGv3 25
F4O CBE -2.423 4.692 0.503 ETKDGv3 26
F4O CBF -2.200 3.461 1.365 ETKDGv3 27
F4O CBG -3.542 2.735 1.714 ETKDGv3 28
F4O CBH -4.260 1.936 0.564 ETKDGv3 29
F4O CBI -3.969 0.394 0.535 ETKDGv3 30
F4O CBJ -2.607 -0.088 -0.078 ETKDGv3 31
F4O CBK -2.595 -0.217 -1.639 ETKDGv3 32
F4O CBL -1.183 -0.569 -2.250 ETKDGv3 33
F4O CBN -0.976 0.303 -3.513 ETKDGv3 34
F4O CBR -1.478 3.869 2.664 ETKDGv3 35
F4O CBS -4.248 2.610 -0.814 ETKDGv3 36
F4O CBX 5.326 -1.527 -0.893 ETKDGv3 37
F4O CBY 5.968 -2.648 -1.634 ETKDGv3 38
F4O CBZ -2.241 -1.402 0.564 ETKDGv3 39
F4O CCC -2.724 -3.811 0.862 ETKDGv3 40
F4O NAN 3.090 3.283 -0.444 ETKDGv3 41
F4O O01 -1.601 -2.394 -3.813 ETKDGv3 42
F4O O02 0.329 -4.066 -2.943 ETKDGv3 43
F4O O03 -4.453 3.669 2.249 ETKDGv3 44
F4O OAK 0.543 1.368 3.537 ETKDGv3 45
F4O OAL 2.173 2.983 2.105 ETKDGv3 46
F4O OAP 1.371 -3.422 3.397 ETKDGv3 47
F4O OAS 3.242 -4.066 1.361 ETKDGv3 48
F4O OAZ 2.763 5.560 -0.166 ETKDGv3 49
F4O OBP -3.573 -1.133 -2.072 ETKDGv3 50
F4O OBQ -5.037 -0.272 -0.097 ETKDGv3 51
F4O OBV 3.933 -1.488 -0.787 ETKDGv3 52
F4O OBW 6.042 -0.662 -0.318 ETKDGv3 53
F4O OCA -1.261 -1.461 1.356 ETKDGv3 54
F4O OCB -3.034 -2.530 0.331 ETKDGv3 55
F4O H1 2.371 -2.508 -3.463 ETKDGv3 56
F4O H2 1.612 -0.976 -2.982 ETKDGv3 57
F4O H3 0.995 -1.906 -4.421 ETKDGv3 58
F4O H4 3.779 0.095 -2.712 ETKDGv3 59
F4O H5 4.884 1.331 -1.992 ETKDGv3 60
F4O H6 3.255 1.795 -2.626 ETKDGv3 61
F4O H7 0.621 -2.214 5.364 ETKDGv3 62
F4O H8 -0.699 -1.142 4.761 ETKDGv3 63
F4O H9 0.755 -0.458 5.602 ETKDGv3 64
F4O H10 0.519 -1.978 -0.398 ETKDGv3 65
F4O H11 3.562 -4.920 -0.919 ETKDGv3 66
F4O H12 1.898 -5.497 -1.276 ETKDGv3 67
F4O H13 2.766 -4.372 -2.394 ETKDGv3 68
F4O H14 -0.691 -3.699 3.410 ETKDGv3 69
F4O H15 0.312 -5.188 3.609 ETKDGv3 70
F4O H16 0.193 -4.403 1.989 ETKDGv3 71
F4O H17 0.455 6.043 0.692 ETKDGv3 72
F4O H18 0.865 3.025 -2.194 ETKDGv3 73
F4O H19 0.070 2.299 -0.754 ETKDGv3 74
F4O H20 -0.801 3.512 -1.772 ETKDGv3 75
F4O H21 -1.773 6.298 -0.641 ETKDGv3 76
F4O H22 -3.438 5.032 0.349 ETKDGv3 77
F4O H23 -1.549 2.752 0.826 ETKDGv3 78
F4O H24 -3.310 1.986 2.508 ETKDGv3 79
F4O H25 -5.336 1.974 0.853 ETKDGv3 80
F4O H26 -3.965 0.072 1.606 ETKDGv3 81
F4O H27 -1.827 0.648 0.203 ETKDGv3 82
F4O H28 -2.881 0.780 -2.017 ETKDGv3 83
F4O H29 -0.401 -0.257 -1.527 ETKDGv3 84
F4O H30 -0.003 0.140 -4.003 ETKDGv3 85
F4O H31 -1.777 0.115 -4.259 ETKDGv3 86
F4O H32 -1.011 1.379 -3.241 ETKDGv3 87
F4O H33 -1.976 4.743 3.136 ETKDGv3 88
F4O H34 -0.419 4.127 2.467 ETKDGv3 89
F4O H35 -1.479 3.036 3.395 ETKDGv3 90
F4O H36 -4.780 3.582 -0.767 ETKDGv3 91
F4O H37 -3.214 2.781 -1.173 ETKDGv3 92
F4O H38 -4.797 1.988 -1.552 ETKDGv3 93
F4O H39 5.296 -2.994 -2.448 ETKDGv3 94
F4O H40 6.157 -3.491 -0.937 ETKDGv3 95
F4O H41 6.929 -2.315 -2.079 ETKDGv3 96
F4O H42 -2.722 -3.772 1.971 ETKDGv3 97
F4O H43 -1.733 -4.145 0.489 ETKDGv3 98
F4O H44 -3.494 -4.538 0.531 ETKDGv3 99
F4O H45 4.052 3.440 -0.822 ETKDGv3 100
F4O H46 -0.269 -4.567 -2.327 ETKDGv3 101
F4O H47 -4.256 3.761 3.218 ETKDGv3 102
F4O H48 -0.085 1.270 4.324 ETKDGv3 103
F4O H49 2.170 2.963 3.115 ETKDGv3 104
F4O H50 -3.788 -0.906 -3.015 ETKDGv3 105
F4O H51 -5.785 -0.326 0.554 ETKDGv3 106
F4O H52 -2.042 -3.282 -3.752 ETKDGv3 107
F4O H53 -1.609 -2.651 -1.775 ETKDGv3 108
#