data_F4W
#
_chem_comp.id F4W
_chem_comp.name
"3-(12-oxidanylidene-7-thia-9,11-diazatricyclo[6.4.0.0^{2,6}]dodeca-1(8),2(6),9-trien-10-yl)propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H12 N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-05-31
_chem_comp.pdbx_modified_date 2018-09-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 264.300
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code F4W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6GNJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F4W OAH O1 O 0 1 N N N N N N 110.157 8.480 7.645 5.483 -0.657 0.041 OAH F4W 1
F4W CAQ C1 C 0 1 N N N N N N 109.878 9.248 6.651 4.956 0.431 0.034 CAQ F4W 2
F4W OAR O2 O 0 1 N N N N N N 108.710 9.439 6.174 5.710 1.541 0.036 OAR F4W 3
F4W CAP C2 C 0 1 N N N N N N 111.047 10.070 6.020 3.454 0.541 0.016 CAP F4W 4
F4W CAO C3 C 0 1 N N N N N N 111.778 9.550 4.750 2.840 -0.861 0.011 CAO F4W 5
F4W CAN C4 C 0 1 N N N N N N 112.670 8.526 5.074 1.337 -0.751 -0.007 CAN F4W 6
F4W NAM N1 N 0 1 N N N N N N 112.202 7.301 5.501 0.791 0.429 -0.014 NAM F4W 7
F4W CAL C5 C 0 1 Y N N N N N 113.053 6.288 5.817 -0.552 0.586 -0.030 CAL F4W 8
F4W SAK S1 S 0 1 Y N N N N N 112.733 4.914 6.300 -1.537 2.039 -0.042 SAK F4W 9
F4W CAJ C6 C 0 1 Y N N N N N 114.091 4.311 6.443 -3.036 1.113 -0.058 CAJ F4W 10
F4W CAI C7 C 0 1 N N N N N N 114.744 3.132 6.832 -4.539 1.378 -0.074 CAI F4W 11
F4W CAB C8 C 0 1 N N N N N N 116.103 3.546 7.247 -5.180 0.048 0.368 CAB F4W 12
F4W CAC C9 C 0 1 N N N N N N 116.287 4.618 6.239 -4.110 -0.971 -0.070 CAC F4W 13
F4W CAD C10 C 0 1 Y N N N N N 115.025 5.237 6.088 -2.795 -0.192 -0.056 CAD F4W 14
F4W CAE C11 C 0 1 Y N N N N N 114.431 6.429 5.715 -1.371 -0.531 -0.039 CAE F4W 15
F4W CAF C12 C 0 1 N N N N N N 114.950 7.658 5.287 -0.753 -1.820 -0.031 CAF F4W 16
F4W OAA O3 O 0 1 N N N N N N 116.158 7.896 5.158 -1.428 -2.835 -0.039 OAA F4W 17
F4W NAG N2 N 0 1 N N N N N N 114.074 8.723 4.954 0.594 -1.887 -0.020 NAG F4W 18
F4W H1 H1 H 0 1 N N N N N N 108.079 8.927 6.666 6.670 1.421 0.043 H1 F4W 19
F4W H2 H2 H 0 1 N N N N N N 110.637 11.058 5.766 3.118 1.081 0.902 H2 F4W 20
F4W H3 H3 H 0 1 N N N N N N 111.813 10.181 6.802 3.139 1.079 -0.878 H3 F4W 21
F4W H4 H4 H 0 1 N N N N N N 111.033 9.167 4.037 3.175 -1.401 -0.875 H4 F4W 22
F4W H5 H5 H 0 1 N N N N N N 112.334 10.380 4.289 3.154 -1.399 0.905 H5 F4W 23
F4W H7 H7 H 0 1 N N N N N N 114.214 2.659 7.672 -4.791 2.173 0.628 H7 F4W 24
F4W H8 H8 H 0 1 N N N N N N 114.798 2.427 5.989 -4.867 1.642 -1.080 H8 F4W 25
F4W H9 H9 H 0 1 N N N N N N 116.129 3.930 8.278 -5.324 0.024 1.448 H9 F4W 26
F4W H10 H10 H 0 1 N N N N N N 116.840 2.737 7.139 -6.121 -0.125 -0.154 H10 F4W 27
F4W H11 H11 H 0 1 N N N N N N 117.031 5.348 6.590 -4.066 -1.801 0.635 H11 F4W 28
F4W H12 H12 H 0 1 N N N N N N 116.618 4.189 5.282 -4.323 -1.337 -1.074 H12 F4W 29
F4W H6 H6 H 0 1 N N N N N N 114.438 9.600 4.639 1.033 -2.752 -0.018 H6 F4W 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F4W OAH CAQ DOUB N N 1
F4W CAQ OAR SING N N 2
F4W CAQ CAP SING N N 3
F4W CAP CAO SING N N 4
F4W CAO CAN SING N N 5
F4W CAN NAM DOUB N N 6
F4W CAN NAG SING N N 7
F4W NAM CAL SING N N 8
F4W CAL SAK SING Y N 9
F4W CAL CAE DOUB Y N 10
F4W SAK CAJ SING Y N 11
F4W CAJ CAI SING N N 12
F4W CAJ CAD DOUB Y N 13
F4W CAI CAB SING N N 14
F4W CAB CAC SING N N 15
F4W CAC CAD SING N N 16
F4W CAD CAE SING Y N 17
F4W CAE CAF SING N N 18
F4W CAF OAA DOUB N N 19
F4W CAF NAG SING N N 20
F4W OAR H1 SING N N 21
F4W CAP H2 SING N N 22
F4W CAP H3 SING N N 23
F4W CAO H4 SING N N 24
F4W CAO H5 SING N N 25
F4W CAI H7 SING N N 26
F4W CAI H8 SING N N 27
F4W CAB H9 SING N N 28
F4W CAB H10 SING N N 29
F4W CAC H11 SING N N 30
F4W CAC H12 SING N N 31
F4W NAG H6 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F4W InChI InChI 1.03 InChI=1S/C12H12N2O3S/c15-9(16)5-4-8-13-11(17)10-6-2-1-3-7(6)18-12(10)14-8/h1-5H2,(H,15,16)(H,13,14,17)
F4W InChIKey InChI 1.03 XKPJAYXICQQVTD-UHFFFAOYSA-N
F4W SMILES_CANONICAL CACTVS 3.385 OC(=O)CCC1=Nc2sc3CCCc3c2C(=O)N1
F4W SMILES CACTVS 3.385 OC(=O)CCC1=Nc2sc3CCCc3c2C(=O)N1
F4W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C1Cc2c(sc3c2C(=O)NC(=N3)CCC(=O)O)C1
F4W SMILES "OpenEye OEToolkits" 2.0.6 C1Cc2c(sc3c2C(=O)NC(=N3)CCC(=O)O)C1
#
_pdbx_chem_comp_identifier.comp_id F4W
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"3-(12-oxidanylidene-7-thia-9,11-diazatricyclo[6.4.0.0^{2,6}]dodeca-1(8),2(6),9-trien-10-yl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F4W 'Create component' 2018-05-31 RCSB
F4W 'Initial release' 2018-09-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
F4W OAH O 4.937 4.491 1
F4W CAQ C 4.468 3.066 2
F4W OAR O 3.000 2.760 3
F4W CAP C 5.468 1.948 4
F4W CAO C 4.999 0.523 5
F4W CAN C 5.998 -0.596 6
F4W NAM N 7.529 -0.282 7
F4W CAL C 8.556 -1.460 8
F4W SAK S 10.056 -1.460 9
F4W CAJ C 10.520 -2.886 10
F4W CAI C 11.724 -3.766 11
F4W CAB C 11.262 -5.183 12
F4W CAC C 9.771 -5.185 13
F4W CAD C 9.306 -3.768 14
F4W CAE C 8.093 -2.886 15
F4W CAF C 6.570 -3.234 16
F4W OAA O 6.123 -4.666 17
F4W NAG N 5.515 -2.081 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
F4W OAH CAQ DOUBLE NONE 1
F4W CAQ OAR SINGLE NONE 2
F4W CAQ CAP SINGLE NONE 3
F4W CAP CAO SINGLE NONE 4
F4W CAO CAN SINGLE NONE 5
F4W CAN NAM DOUBLE NONE 6
F4W CAN NAG SINGLE NONE 7
F4W NAM CAL SINGLE NONE 8
F4W CAL SAK SINGLE NONE 9
F4W CAL CAE DOUBLE NONE 10
F4W SAK CAJ SINGLE NONE 11
F4W CAJ CAI SINGLE NONE 12
F4W CAJ CAD DOUBLE NONE 13
F4W CAI CAB SINGLE NONE 14
F4W CAB CAC SINGLE NONE 15
F4W CAC CAD SINGLE NONE 16
F4W CAD CAE SINGLE NONE 17
F4W CAE CAF SINGLE NONE 18
F4W CAF OAA DOUBLE NONE 19
F4W CAF NAG SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
F4W MurckoScaffold S1 scaffold 'O=c1[nH]cnc2sc3c(c12)CCC3' InChI=1S/C9H8N2OS/c12-8-7-5-2-1-3-6(5)13-9(7)11-4-10-8/h4H,1-3H2,(H,10,11,12) MZAZSAHKQBGEMA-UHFFFAOYSA-N
F4W pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
F4W thiophen F2 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
F4W CAN S1 1
F4W NAM S1 1
F4W CAL S1 1
F4W SAK S1 1
F4W CAJ S1 1
F4W CAI S1 1
F4W CAB S1 1
F4W CAC S1 1
F4W CAD S1 1
F4W CAE S1 1
F4W CAF S1 1
F4W OAA S1 1
F4W NAG S1 1
F4W CAE F1 1
F4W CAL F1 1
F4W NAM F1 1
F4W CAN F1 1
F4W NAG F1 1
F4W CAF F1 1
F4W CAL F2 1
F4W CAE F2 1
F4W CAD F2 1
F4W CAJ F2 1
F4W SAK F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id F4W
_pdbe_chem_comp_rdkit_properties.exactmw 264.057
_pdbe_chem_comp_rdkit_properties.amw 264.306
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 123.498
_pdbe_chem_comp_rdkit_properties.tpsa 83.050
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.798
_pdbe_chem_comp_rdkit_properties.CrippenMR 65.327
_pdbe_chem_comp_rdkit_properties.chi0v 9.344
_pdbe_chem_comp_rdkit_properties.chi1v 5.482
_pdbe_chem_comp_rdkit_properties.chi2v 3.157
_pdbe_chem_comp_rdkit_properties.chi3v 3.157
_pdbe_chem_comp_rdkit_properties.chi4v 2.464
_pdbe_chem_comp_rdkit_properties.chi0n 20.527
_pdbe_chem_comp_rdkit_properties.chi1n 10.521
_pdbe_chem_comp_rdkit_properties.chi2n 2.158
_pdbe_chem_comp_rdkit_properties.chi3n 2.158
_pdbe_chem_comp_rdkit_properties.chi4n 1.490
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.690
_pdbe_chem_comp_rdkit_properties.kappa1 4.161
_pdbe_chem_comp_rdkit_properties.kappa2 4.204
_pdbe_chem_comp_rdkit_properties.kappa3 1.821
_pdbe_chem_comp_rdkit_properties.Phi 0.972
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
F4W UniChem ChEMBL CHEMBL4175931
F4W UniChem PDBe F4W
F4W UniChem ZINC ZINC000005072974
F4W UniChem eMolecules 2862090
F4W UniChem eMolecules 31407480
F4W UniChem 'PubChem TPHARMA' 136883786
F4W UniChem BRENDA 209538
F4W UniChem BindingDb 50285363
F4W UniChem SureChEMBL SCHEMBL9886612
F4W UniChem PubChem 3836940
F4W UniChem Mcule MCULE-6817190141
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
F4W OAH 6.043 -0.888 0.004 ETKDGv3 1
F4W CAQ 5.330 0.076 0.392 ETKDGv3 2
F4W OAR 5.914 1.312 0.656 ETKDGv3 3
F4W CAP 3.850 -0.091 0.524 ETKDGv3 4
F4W CAO 3.151 0.269 -0.788 ETKDGv3 5
F4W CAN 1.668 0.102 -0.654 ETKDGv3 6
F4W NAM 0.931 1.124 -0.307 ETKDGv3 7
F4W CAL -0.487 0.990 -0.136 ETKDGv3 8
F4W SAK -1.615 2.303 0.346 ETKDGv3 9
F4W CAJ -2.962 1.132 0.275 ETKDGv3 10
F4W CAI -4.392 1.222 0.617 ETKDGv3 11
F4W CAB -4.883 -0.225 0.384 ETKDGv3 12
F4W CAC -3.650 -1.065 -0.025 ETKDGv3 13
F4W CAD -2.565 -0.062 -0.057 ETKDGv3 14
F4W CAE -1.120 -0.170 -0.303 ETKDGv3 15
F4W CAF -0.347 -1.355 -0.674 ETKDGv3 16
F4W OAA -0.897 -2.476 -0.837 ETKDGv3 17
F4W NAG 1.068 -1.197 -0.844 ETKDGv3 18
F4W H1 6.913 1.446 0.555 ETKDGv3 19
F4W H2 3.482 0.568 1.340 ETKDGv3 20
F4W H3 3.620 -1.145 0.799 ETKDGv3 21
F4W H4 3.385 1.322 -1.063 ETKDGv3 22
F4W H5 3.520 -0.388 -1.605 ETKDGv3 23
F4W H7 -4.907 1.939 -0.057 ETKDGv3 24
F4W H8 -4.514 1.521 1.680 ETKDGv3 25
F4W H9 -5.338 -0.634 1.313 ETKDGv3 26
F4W H10 -5.644 -0.245 -0.426 ETKDGv3 27
F4W H11 -3.785 -1.520 -1.030 ETKDGv3 28
F4W H12 -3.427 -1.845 0.733 ETKDGv3 29
F4W H6 1.658 -2.021 -1.100 ETKDGv3 30
#