data_F52
#
_chem_comp.id F52
_chem_comp.name "2-[2,4,5-tris(chloranyl)phenoxy]ethanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H5 Cl3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-06-01
_chem_comp.pdbx_modified_date 2018-07-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 255.482
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code F52
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6GNW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F52 O01 O1 O 0 1 N N N N N N -18.060 -3.085 -38.405 4.804 1.953 -0.001 O01 F52 1
F52 C02 C1 C 0 1 N N N N N N -16.902 -3.666 -38.303 4.003 0.876 -0.001 C02 F52 2
F52 O03 O2 O 0 1 N N N N N N -16.307 -4.150 -39.272 4.483 -0.233 -0.005 O03 F52 3
F52 C04 C2 C 0 1 N N N N N N -16.300 -3.728 -36.927 2.507 1.050 0.003 C04 F52 4
F52 O05 O3 O 0 1 N N N N N N -15.209 -2.825 -36.807 1.878 -0.233 0.002 O05 F52 5
F52 C06 C3 C 0 1 Y N N N N N -14.187 -2.950 -37.724 0.519 -0.255 0.005 C06 F52 6
F52 C07 C4 C 0 1 Y N N N N N -14.235 -2.418 -38.999 -0.194 0.934 0.004 C07 F52 7
F52 C08 C5 C 0 1 Y N N N N N -13.174 -2.579 -39.870 -1.577 0.911 0.002 C08 F52 8
F52 CL1 CL1 CL 0 0 N N N N N N -13.287 -1.890 -41.459 -2.470 2.399 -0.001 CL09 F52 9
F52 C10 C6 C 0 1 Y N N N N N -12.036 -3.282 -39.477 -2.249 -0.300 0.001 C10 F52 10
F52 CL2 CL2 CL 0 0 N N N N N N -10.697 -3.495 -40.556 -3.985 -0.327 -0.003 CL11 F52 11
F52 C12 C7 C 0 1 Y N N N N N -11.966 -3.831 -38.188 -1.540 -1.487 0.002 C12 F52 12
F52 C13 C8 C 0 1 Y N N N N N -13.055 -3.653 -37.323 -0.157 -1.467 0.004 C13 F52 13
F52 CL3 CL3 CL 0 0 N N N N N N -12.982 -4.326 -35.726 0.732 -2.958 -0.001 CL14 F52 14
F52 H1 H1 H 0 1 N N N N N N -18.345 -3.102 -39.311 5.758 1.791 -0.004 H1 F52 15
F52 H2 H2 H 0 1 N N N N N N -17.069 -3.464 -36.186 2.207 1.600 0.895 H2 F52 16
F52 H3 H3 H 0 1 N N N N N N -15.943 -4.751 -36.736 2.203 1.604 -0.885 H3 F52 17
F52 H4 H4 H 0 1 N N N N N N -15.110 -1.871 -39.318 0.330 1.879 0.005 H4 F52 18
F52 H5 H5 H 0 1 N N N N N N -11.092 -4.379 -37.869 -2.066 -2.431 0.001 H5 F52 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F52 CL1 C08 SING N N 1
F52 CL2 C10 SING N N 2
F52 C08 C10 DOUB Y N 3
F52 C08 C07 SING Y N 4
F52 C10 C12 SING Y N 5
F52 O03 C02 DOUB N N 6
F52 C07 C06 DOUB Y N 7
F52 O01 C02 SING N N 8
F52 C02 C04 SING N N 9
F52 C12 C13 DOUB Y N 10
F52 C06 C13 SING Y N 11
F52 C06 O05 SING N N 12
F52 C13 CL3 SING N N 13
F52 C04 O05 SING N N 14
F52 O01 H1 SING N N 15
F52 C04 H2 SING N N 16
F52 C04 H3 SING N N 17
F52 C07 H4 SING N N 18
F52 C12 H5 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F52 InChI InChI 1.03 InChI=1S/C8H5Cl3O3/c9-4-1-6(11)7(2-5(4)10)14-3-8(12)13/h1-2H,3H2,(H,12,13)
F52 InChIKey InChI 1.03 SMYMJHWAQXWPDB-UHFFFAOYSA-N
F52 SMILES_CANONICAL CACTVS 3.385 OC(=O)COc1cc(Cl)c(Cl)cc1Cl
F52 SMILES CACTVS 3.385 OC(=O)COc1cc(Cl)c(Cl)cc1Cl
F52 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1c(c(cc(c1Cl)Cl)Cl)OCC(=O)O
F52 SMILES "OpenEye OEToolkits" 2.0.6 c1c(c(cc(c1Cl)Cl)Cl)OCC(=O)O
#
_pdbx_chem_comp_identifier.comp_id F52
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "2-[2,4,5-tris(chloranyl)phenoxy]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F52 'Create component' 2018-06-01 RCSB
F52 'Initial release' 2018-07-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
F52 O01 O 5.598 4.035 1
F52 C02 C 6.897 3.285 2
F52 O03 O 8.196 4.035 3
F52 C04 C 6.897 1.785 4
F52 O05 O 5.598 1.035 5
F52 C06 C 5.598 -0.465 6
F52 C07 C 6.897 -1.215 7
F52 C08 C 6.897 -2.715 8
F52 CL1 Cl 8.196 -3.465 9
F52 C10 C 5.598 -3.465 10
F52 CL2 Cl 5.598 -4.965 11
F52 C12 C 4.299 -2.715 12
F52 C13 C 4.299 -1.215 13
F52 CL3 Cl 3.000 -0.465 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
F52 CL1 C08 SINGLE NONE 1
F52 CL2 C10 SINGLE NONE 2
F52 C08 C10 DOUBLE NONE 3
F52 C08 C07 SINGLE NONE 4
F52 C10 C12 SINGLE NONE 5
F52 O03 C02 DOUBLE NONE 6
F52 C07 C06 DOUBLE NONE 7
F52 O01 C02 SINGLE NONE 8
F52 C02 C04 SINGLE NONE 9
F52 C12 C13 DOUBLE NONE 10
F52 C06 C13 SINGLE NONE 11
F52 C06 O05 SINGLE NONE 12
F52 C13 CL3 SINGLE NONE 13
F52 C04 O05 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
F52 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
F52 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
F52 C06 S1 1
F52 C07 S1 1
F52 C08 S1 1
F52 C10 S1 1
F52 C12 S1 1
F52 C13 S1 1
F52 C06 F1 1
F52 C07 F1 1
F52 C08 F1 1
F52 C10 F1 1
F52 C12 F1 1
F52 C13 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id F52
_pdbe_chem_comp_rdkit_properties.exactmw 253.930
_pdbe_chem_comp_rdkit_properties.amw 255.484
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 102.252
_pdbe_chem_comp_rdkit_properties.tpsa 46.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.648
_pdbe_chem_comp_rdkit_properties.CrippenMR 53.993
_pdbe_chem_comp_rdkit_properties.chi0v 8.626
_pdbe_chem_comp_rdkit_properties.chi1v 4.267
_pdbe_chem_comp_rdkit_properties.chi2v 2.001
_pdbe_chem_comp_rdkit_properties.chi3v 2.001
_pdbe_chem_comp_rdkit_properties.chi4v 1.084
_pdbe_chem_comp_rdkit_properties.chi0n 11.359
_pdbe_chem_comp_rdkit_properties.chi1n 5.542
_pdbe_chem_comp_rdkit_properties.chi2n 1.071
_pdbe_chem_comp_rdkit_properties.chi3n 1.071
_pdbe_chem_comp_rdkit_properties.chi4n 0.580
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.640
_pdbe_chem_comp_rdkit_properties.kappa1 6.055
_pdbe_chem_comp_rdkit_properties.kappa2 4.732
_pdbe_chem_comp_rdkit_properties.kappa3 2.941
_pdbe_chem_comp_rdkit_properties.Phi 2.046
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
F52 UniChem ChEMBL CHEMBL194458
F52 UniChem PDBe F52
F52 UniChem 'KEGG LIGAND' C07100
F52 UniChem ChEBI 27903
F52 UniChem ZINC ZINC000000056520
F52 UniChem eMolecules 510225
F52 UniChem fdasrs 9Q963S4YMX
F52 UniChem HMDB HMDB0245475
F52 UniChem 'PubChem TPHARMA' 15070051
F52 UniChem NMRShiftDB 20041096
F52 UniChem LINCS LSM-24946
F52 UniChem ACTor 37785-57-2
F52 UniChem ACTor 93-76-5
F52 UniChem BindingDb 50410519
F52 UniChem 'EPA CompTox Dashboard' DTXSID5021388
F52 UniChem BRENDA 109416
F52 UniChem BRENDA 118746
F52 UniChem ChemicalBook CB6263140
F52 UniChem Nikkaji J3.941A
F52 UniChem SureChEMBL SCHEMBL117704
F52 UniChem PubChem 1480
F52 UniChem Mcule MCULE-5451577697
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
F52 O01 3.167 1.081 -0.421 ETKDGv3 1
F52 C02 2.549 0.031 -1.094 ETKDGv3 2
F52 O03 2.396 0.086 -2.343 ETKDGv3 3
F52 C04 2.083 -1.170 -0.335 ETKDGv3 4
F52 O05 0.702 -1.426 -0.594 ETKDGv3 5
F52 C06 -0.377 -0.646 -0.140 ETKDGv3 6
F52 C07 -0.215 0.420 0.670 ETKDGv3 7
F52 C08 -1.384 1.208 1.120 ETKDGv3 8
F52 CL1 -1.110 2.591 2.172 ETKDGv3 9
F52 C10 -2.620 0.860 0.721 ETKDGv3 10
F52 CL2 -4.043 1.763 1.226 ETKDGv3 11
F52 C12 -2.803 -0.309 -0.163 ETKDGv3 12
F52 C13 -1.745 -1.022 -0.571 ETKDGv3 13
F52 CL3 -1.986 -2.408 -1.624 ETKDGv3 14
F52 H1 3.490 1.900 -0.922 ETKDGv3 15
F52 H2 2.673 -2.048 -0.671 ETKDGv3 16
F52 H3 2.257 -1.048 0.755 ETKDGv3 17
F52 H4 0.764 0.723 1.011 ETKDGv3 18
F52 H5 -3.800 -0.587 -0.481 ETKDGv3 19
#