data_F8J
#
_chem_comp.id F8J
_chem_comp.name
2-{6-({[2-(1H-indol-3-yl)ethyl]carbamothioyl}amino)-3-[(4-methylpiperazin-1-yl)methyl]-1H-indol-1-yl}-N-(propan-2-yl)acetamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H39 N7 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-03-15
_chem_comp.pdbx_modified_date 2019-03-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 545.742
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code F8J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CQ1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F8J N N1 N 0 1 Y N N N N N -9.891 3.729 -1.903 -2.526 1.591 0.505 N F8J 1
F8J CA C1 C 0 1 N N N N N N -8.789 4.420 -1.197 -1.663 2.548 1.201 CA F8J 2
F8J C C2 C 0 1 N N N N N N -9.361 5.349 -0.115 -0.848 3.316 0.192 C F8J 3
F8J O O1 O 0 1 N N N N N N -10.556 5.645 -0.099 -0.976 3.086 -0.992 O F8J 4
F8J CAA C3 C 0 1 N N N N N N -8.540 8.153 1.468 -0.000 6.193 -0.889 CAA F8J 5
F8J CAB C4 C 0 1 N N N N N N -8.062 6.351 3.133 2.097 5.513 0.286 CAB F8J 6
F8J CAC C5 C 0 1 N N N N N N -15.906 6.736 -6.469 -9.116 -3.059 1.631 CAC F8J 7
F8J CAF C6 C 0 1 Y N N N N N -18.859 -1.363 -1.546 8.929 0.427 1.779 CAF F8J 8
F8J CAG C7 C 0 1 Y N N N N N -19.047 -1.083 -0.200 7.771 0.040 2.438 CAG F8J 9
F8J CAH C8 C 0 1 Y N N N N N -12.665 0.941 -0.944 -2.000 -2.250 -0.927 CAH F8J 10
F8J CAI C9 C 0 1 Y N N N N N -17.931 -0.608 -2.251 9.187 -0.007 0.497 CAI F8J 11
F8J CAJ C10 C 0 1 Y N N N N N -18.294 -0.065 0.371 6.868 -0.785 1.827 CAJ F8J 12
F8J CAK C11 C 0 1 Y N N N N N -12.523 1.545 -2.185 -3.169 -1.553 -1.040 CAK F8J 13
F8J CAL C12 C 0 1 Y N N N N N -15.908 1.996 -1.134 7.108 -2.174 -1.525 CAL F8J 14
F8J CAM C13 C 0 1 Y N N N N N -10.826 2.256 -0.185 -0.963 -0.392 0.209 CAM F8J 15
F8J CAN C14 C 0 1 Y N N N N N -10.201 3.948 -3.180 -3.829 1.820 0.149 CAN F8J 16
F8J CAO C15 C 0 1 N N N N N N -15.444 1.521 2.227 3.917 -1.808 -0.462 CAO F8J 17
F8J CAP C16 C 0 1 N N N N N N -16.457 2.278 1.341 5.057 -2.778 -0.144 CAP F8J 18
F8J CAQ C17 C 0 1 N N N N N N -14.587 5.748 -4.705 -6.881 -2.316 1.068 CAQ F8J 19
F8J CAR C18 C 0 1 N N N N N N -13.997 5.357 -6.997 -8.783 -0.899 0.586 CAR F8J 20
F8J CAS C19 C 0 1 N N N N N N -13.769 4.535 -4.287 -6.056 -1.566 0.019 CAS F8J 21
F8J CAT C20 C 0 1 N N N N N N -13.167 4.148 -6.580 -7.959 -0.149 -0.463 CAT F8J 22
F8J CAV C21 C 0 1 N N N N N N -11.922 3.077 -4.834 -5.723 0.593 -1.026 CAV F8J 23
F8J CBB C22 C 0 1 N N N N N N -13.071 0.782 2.006 1.481 -1.797 -0.425 CBB F8J 24
F8J CBC C23 C 0 1 Y N N N N N -11.814 1.314 0.090 -0.893 -1.675 -0.305 CBC F8J 25
F8J CBD C24 C 0 1 Y N N N N N -16.592 1.629 -0.051 6.379 -2.102 -0.400 CBD F8J 26
F8J CBE C25 C 0 1 Y N N N N N -11.234 3.166 -3.459 -4.328 0.744 -0.477 CBE F8J 27
F8J CBF C26 C 0 1 Y N N N N N -17.235 0.361 -1.656 8.280 -0.842 -0.145 CBF F8J 28
F8J CBG C27 C 0 1 Y N N N N N -17.417 0.629 -0.358 7.112 -1.242 0.531 CBG F8J 29
F8J CBH C28 C 0 1 Y N N N N N -11.567 2.452 -2.385 -3.259 -0.258 -0.527 CBH F8J 30
F8J CBI C29 C 0 1 Y N N N N N -10.729 2.809 -1.402 -2.147 0.329 0.105 CBI F8J 31
F8J CBJ C30 C 0 1 N N N N N N -8.852 6.711 1.870 0.815 5.004 -0.375 CBJ F8J 32
F8J NAW N2 N 0 1 N N N N N N -14.147 1.442 1.535 2.632 -2.465 -0.213 NAW F8J 33
F8J NAX N3 N 0 1 N N N N N N -11.912 0.738 1.304 0.298 -2.402 -0.196 NAX F8J 34
F8J NAY N4 N 0 1 N N N N N N -8.469 5.804 0.776 0.023 4.258 0.606 NAY F8J 35
F8J NAZ N5 N 0 1 Y N N N N N -16.310 1.204 -2.127 8.250 -1.431 -1.389 NAZ F8J 36
F8J NBK N6 N 0 1 N N N N N N -15.118 5.560 -6.066 -8.300 -2.283 0.687 NBK F8J 37
F8J NBL N7 N 0 1 N N N N N N -12.643 4.308 -5.210 -6.540 -0.182 -0.082 NBL F8J 38
F8J SAE S1 S 0 1 N N N N N N -13.147 0.017 3.520 1.520 -0.180 -0.986 SAE F8J 39
F8J H1 H1 H 0 1 N N N N N N -8.133 3.673 -0.726 -2.277 3.241 1.776 H1 F8J 40
F8J H2 H2 H 0 1 N N N N N N -8.210 5.014 -1.919 -0.994 2.011 1.875 H2 F8J 41
F8J H3 H3 H 0 1 N N N N N N -8.826 8.832 2.285 -0.914 5.830 -1.360 H3 F8J 42
F8J H4 H4 H 0 1 N N N N N N -7.463 8.253 1.268 -0.256 6.846 -0.055 H4 F8J 43
F8J H5 H5 H 0 1 N N N N N N -9.107 8.412 0.561 0.589 6.748 -1.619 H5 F8J 44
F8J H6 H6 H 0 1 N N N N N N -8.348 7.029 3.951 1.841 6.167 1.120 H6 F8J 45
F8J H7 H7 H 0 1 N N N N N N -8.285 5.313 3.422 2.678 4.667 0.653 H7 F8J 46
F8J H8 H8 H 0 1 N N N N N N -6.985 6.452 2.933 2.686 6.069 -0.443 H8 F8J 47
F8J H9 H9 H 0 1 N N N N N N -16.740 6.877 -5.766 -10.151 -3.074 1.289 H9 F8J 48
F8J H10 H10 H 0 1 N N N N N N -15.263 7.629 -6.459 -8.737 -4.079 1.687 H10 F8J 49
F8J H11 H11 H 0 1 N N N N N N -16.303 6.581 -7.483 -9.066 -2.598 2.618 H11 F8J 50
F8J H12 H12 H 0 1 N N N N N N -19.420 -2.147 -2.032 9.633 1.079 2.274 H12 F8J 51
F8J H13 H13 H 0 1 N N N N N N -19.760 -1.642 0.388 7.581 0.393 3.441 H13 F8J 52
F8J H14 H14 H 0 1 N N N N N N -13.426 0.192 -0.784 -1.932 -3.252 -1.323 H14 F8J 53
F8J H15 H15 H 0 1 N N N N N N -17.770 -0.809 -3.300 10.092 0.300 -0.007 H15 F8J 54
F8J H16 H16 H 0 1 N N N N N N -18.420 0.168 1.418 5.968 -1.082 2.346 H16 F8J 55
F8J H17 H17 H 0 1 N N N N N N -13.190 1.279 -2.992 -4.022 -2.003 -1.526 H17 F8J 56
F8J H18 H18 H 0 1 N N N N N N -15.171 2.783 -1.195 6.835 -2.735 -2.406 H18 F8J 57
F8J H19 H19 H 0 1 N N N N N N -10.131 2.544 0.590 -0.101 0.048 0.689 H19 F8J 58
F8J H20 H20 H 0 1 N N N N N N -9.707 4.630 -3.856 -4.373 2.732 0.344 H20 F8J 59
F8J H21 H21 H 0 1 N N N N N N -15.319 2.056 3.180 4.003 -0.926 0.174 H21 F8J 60
F8J H22 H22 H 0 1 N N N N N N -15.817 0.505 2.424 3.976 -1.508 -1.508 H22 F8J 61
F8J H23 H23 H 0 1 N N N N N N -16.117 3.317 1.219 4.998 -3.078 0.902 H23 F8J 62
F8J H24 H24 H 0 1 N N N N N N -17.440 2.269 1.835 4.970 -3.660 -0.780 H24 F8J 63
F8J H25 H25 H 0 1 N N N N N N -13.947 6.642 -4.685 -6.543 -3.351 1.124 H25 F8J 64
F8J H26 H26 H 0 1 N N N N N N -15.424 5.881 -4.004 -6.754 -1.839 2.040 H26 F8J 65
F8J H27 H27 H 0 1 N N N N N N -13.358 6.253 -6.995 -8.678 -0.406 1.552 H27 F8J 66
F8J H28 H28 H 0 1 N N N N N N -14.393 5.192 -8.010 -9.832 -0.901 0.290 H28 F8J 67
F8J H29 H29 H 0 1 N N N N N N -14.418 3.647 -4.288 -5.007 -1.564 0.315 H29 F8J 68
F8J H30 H30 H 0 1 N N N N N N -13.375 4.700 -3.274 -6.161 -2.060 -0.947 H30 F8J 69
F8J H31 H31 H 0 1 N N N N N N -13.798 3.248 -6.620 -8.086 -0.627 -1.435 H31 F8J 70
F8J H32 H32 H 0 1 N N N N N N -12.323 4.035 -7.276 -8.297 0.886 -0.519 H32 F8J 71
F8J H33 H33 H 0 1 N N N N N N -12.641 2.245 -4.811 -6.167 1.579 -1.166 H33 F8J 72
F8J H34 H34 H 0 1 N N N N N N -11.154 2.876 -5.596 -5.683 0.074 -1.983 H34 F8J 73
F8J H35 H35 H 0 1 N N N N N N -9.928 6.617 2.078 1.070 4.351 -1.209 H35 F8J 74
F8J H36 H36 H 0 1 N N N N N N -14.059 1.910 0.656 2.609 -3.382 0.105 H36 F8J 75
F8J H37 H37 H 0 1 N N N N N N -11.118 0.271 1.693 0.273 -3.342 0.043 H37 F8J 76
F8J H38 H38 H 0 1 N N N N N N -7.514 5.518 0.695 0.125 4.441 1.553 H38 F8J 77
F8J H39 H39 H 0 1 N N N N N N -15.975 1.235 -3.069 8.936 -1.335 -2.068 H39 F8J 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F8J CAR CAT SING N N 1
F8J CAR NBK SING N N 2
F8J CAT NBL SING N N 3
F8J CAC NBK SING N N 4
F8J NBK CAQ SING N N 5
F8J NBL CAV SING N N 6
F8J NBL CAS SING N N 7
F8J CAV CBE SING N N 8
F8J CAQ CAS SING N N 9
F8J CBE CAN DOUB Y N 10
F8J CBE CBH SING Y N 11
F8J CAN N SING Y N 12
F8J CBH CAK DOUB Y N 13
F8J CBH CBI SING Y N 14
F8J CAI CBF DOUB Y N 15
F8J CAI CAF SING Y N 16
F8J CAK CAH SING Y N 17
F8J NAZ CBF SING Y N 18
F8J NAZ CAL SING Y N 19
F8J N CBI SING Y N 20
F8J N CA SING N N 21
F8J CBF CBG SING Y N 22
F8J CAF CAG DOUB Y N 23
F8J CBI CAM DOUB Y N 24
F8J CA C SING N N 25
F8J CAL CBD DOUB Y N 26
F8J CAH CBC DOUB Y N 27
F8J CBG CBD SING Y N 28
F8J CBG CAJ DOUB Y N 29
F8J CAG CAJ SING Y N 30
F8J CAM CBC SING Y N 31
F8J C O DOUB N N 32
F8J C NAY SING N N 33
F8J CBD CAP SING N N 34
F8J CBC NAX SING N N 35
F8J NAY CBJ SING N N 36
F8J NAX CBB SING N N 37
F8J CAP CAO SING N N 38
F8J CAA CBJ SING N N 39
F8J NAW CBB SING N N 40
F8J NAW CAO SING N N 41
F8J CBJ CAB SING N N 42
F8J CBB SAE DOUB N N 43
F8J CA H1 SING N N 44
F8J CA H2 SING N N 45
F8J CAA H3 SING N N 46
F8J CAA H4 SING N N 47
F8J CAA H5 SING N N 48
F8J CAB H6 SING N N 49
F8J CAB H7 SING N N 50
F8J CAB H8 SING N N 51
F8J CAC H9 SING N N 52
F8J CAC H10 SING N N 53
F8J CAC H11 SING N N 54
F8J CAF H12 SING N N 55
F8J CAG H13 SING N N 56
F8J CAH H14 SING N N 57
F8J CAI H15 SING N N 58
F8J CAJ H16 SING N N 59
F8J CAK H17 SING N N 60
F8J CAL H18 SING N N 61
F8J CAM H19 SING N N 62
F8J CAN H20 SING N N 63
F8J CAO H21 SING N N 64
F8J CAO H22 SING N N 65
F8J CAP H23 SING N N 66
F8J CAP H24 SING N N 67
F8J CAQ H25 SING N N 68
F8J CAQ H26 SING N N 69
F8J CAR H27 SING N N 70
F8J CAR H28 SING N N 71
F8J CAS H29 SING N N 72
F8J CAS H30 SING N N 73
F8J CAT H31 SING N N 74
F8J CAT H32 SING N N 75
F8J CAV H33 SING N N 76
F8J CAV H34 SING N N 77
F8J CBJ H35 SING N N 78
F8J NAW H36 SING N N 79
F8J NAX H37 SING N N 80
F8J NAY H38 SING N N 81
F8J NAZ H39 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F8J SMILES ACDLabs 12.01 n1(c3cc(ccc3c(c1)CN2CCN(C)CC2)NC(=S)NCCc4cnc5ccccc45)CC(=O)NC(C)C
F8J InChI InChI 1.03 InChI=1S/C30H39N7OS/c1-21(2)33-29(38)20-37-19-23(18-36-14-12-35(3)13-15-36)26-9-8-24(16-28(26)37)34-30(39)31-11-10-22-17-32-27-7-5-4-6-25(22)27/h4-9,16-17,19,21,32H,10-15,18,20H2,1-3H3,(H,33,38)(H2,31,34,39)
F8J InChIKey InChI 1.03 DCSGGGDRUYCRAM-UHFFFAOYSA-N
F8J SMILES_CANONICAL CACTVS 3.385 CC(C)NC(=O)Cn1cc(CN2CCN(C)CC2)c3ccc(NC(=S)NCCc4c[nH]c5ccccc45)cc13
F8J SMILES CACTVS 3.385 CC(C)NC(=O)Cn1cc(CN2CCN(C)CC2)c3ccc(NC(=S)NCCc4c[nH]c5ccccc45)cc13
F8J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)NC(=O)Cn1cc(c2c1cc(cc2)NC(=S)NCCc3c[nH]c4c3cccc4)CN5CCN(CC5)C
F8J SMILES "OpenEye OEToolkits" 2.0.6 CC(C)NC(=O)Cn1cc(c2c1cc(cc2)NC(=S)NCCc3c[nH]c4c3cccc4)CN5CCN(CC5)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
F8J "SYSTEMATIC NAME" ACDLabs 12.01 2-{6-({[2-(1H-indol-3-yl)ethyl]carbamothioyl}amino)-3-[(4-methylpiperazin-1-yl)methyl]-1H-indol-1-yl}-N-(propan-2-yl)acetamide
F8J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 2-[6-[2-(1~{H}-indol-3-yl)ethylcarbamothioylamino]-3-[(4-methylpiperazin-1-yl)methyl]indol-1-yl]-~{N}-propan-2-yl-ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F8J 'Create component' 2018-03-15 RCSB
F8J 'Modify name' 2018-03-15 RCSB
F8J 'Initial release' 2019-03-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
F8J N N 19.109 -0.494 1
F8J CA C 19.575 -1.920 2
F8J C C 21.043 -2.229 3
F8J O O 22.044 -1.113 4
F8J CAA C 23.442 -5.390 5
F8J CAB C 23.978 -2.848 6
F8J CAC C 25.446 4.583 7
F8J CAF C 3.000 -1.264 8
F8J CAG C 4.002 -2.380 9
F8J CAH C 15.091 1.463 10
F8J CAI C 3.466 0.162 11
F8J CAJ C 5.470 -2.071 12
F8J CAK C 16.390 2.213 13
F8J CAL C 7.143 1.446 14
F8J CAM C 16.390 -0.787 15
F8J CAN C 19.984 0.713 16
F8J CAO C 9.895 -0.037 17
F8J CAP C 8.596 -0.787 18
F8J CAQ C 22.976 5.390 19
F8J CAR C 23.512 2.848 20
F8J CAS C 21.509 5.081 21
F8J CAT C 22.044 2.539 22
F8J CAV C 19.575 3.346 23
F8J CBB C 12.493 -0.037 24
F8J CBC C 15.091 -0.037 25
F8J CBD C 7.297 -0.037 26
F8J CBE C 19.109 1.920 27
F8J CBF C 4.934 0.472 28
F8J CBG C 5.936 -0.645 29
F8J CBH C 17.689 1.463 30
F8J CBI C 17.689 -0.037 31
F8J CBJ C 22.976 -3.965 32
F8J NAW N 11.194 -0.787 33
F8J NAX N 13.792 -0.787 34
F8J NAY N 21.509 -3.655 35
F8J NAZ N 5.685 1.760 36
F8J NBK N 23.978 4.274 37
F8J NBL N 21.043 3.655 38
F8J SAE S 12.493 1.463 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
F8J CAR CAT SINGLE NONE 1
F8J CAR NBK SINGLE NONE 2
F8J CAT NBL SINGLE NONE 3
F8J CAC NBK SINGLE NONE 4
F8J NBK CAQ SINGLE NONE 5
F8J NBL CAV SINGLE NONE 6
F8J NBL CAS SINGLE NONE 7
F8J CAV CBE SINGLE NONE 8
F8J CAQ CAS SINGLE NONE 9
F8J CBE CAN DOUBLE NONE 10
F8J CBE CBH SINGLE NONE 11
F8J CAN N SINGLE NONE 12
F8J CBH CAK SINGLE NONE 13
F8J CBH CBI DOUBLE NONE 14
F8J CAI CBF SINGLE NONE 15
F8J CAI CAF DOUBLE NONE 16
F8J CAK CAH DOUBLE NONE 17
F8J NAZ CBF SINGLE NONE 18
F8J NAZ CAL SINGLE NONE 19
F8J N CBI SINGLE NONE 20
F8J N CA SINGLE NONE 21
F8J CBF CBG DOUBLE NONE 22
F8J CAF CAG SINGLE NONE 23
F8J CBI CAM SINGLE NONE 24
F8J CA C SINGLE NONE 25
F8J CAL CBD DOUBLE NONE 26
F8J CAH CBC SINGLE NONE 27
F8J CBG CBD SINGLE NONE 28
F8J CBG CAJ SINGLE NONE 29
F8J CAG CAJ DOUBLE NONE 30
F8J CAM CBC DOUBLE NONE 31
F8J C O DOUBLE NONE 32
F8J C NAY SINGLE NONE 33
F8J CBD CAP SINGLE NONE 34
F8J CBC NAX SINGLE NONE 35
F8J NAY CBJ SINGLE NONE 36
F8J NAX CBB SINGLE NONE 37
F8J CAP CAO SINGLE NONE 38
F8J CAA CBJ SINGLE NONE 39
F8J NAW CBB SINGLE NONE 40
F8J NAW CAO SINGLE NONE 41
F8J CBJ CAB SINGLE NONE 42
F8J CBB SAE DOUBLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
F8J MurckoScaffold S1 scaffold 'S=C(NCCc1c[nH]c2ccccc12)Nc1ccc2c(CN3CCNCC3)c[nH]c2c1' InChI=1S/C24H28N6S/c31-24(26-8-7-17-14-27-22-4-2-1-3-20(17)22)29-19-5-6-21-18(15-28-23(21)13-19)16-30-11-9-25-10-12-30/h1-6,13-15,25,27-28H,7-12,16H2,(H2,26,29,31) HFPQMUBQRILLLP-UHFFFAOYSA-N
F8J amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
F8J indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
F8J peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
F8J phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
F8J piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
F8J pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
F8J N S1 1
F8J CAF S1 1
F8J CAG S1 1
F8J CAH S1 1
F8J CAI S1 1
F8J CAJ S1 1
F8J CAK S1 1
F8J CAL S1 1
F8J CAM S1 1
F8J CAN S1 1
F8J CAO S1 1
F8J CAP S1 1
F8J CAQ S1 1
F8J CAR S1 1
F8J CAS S1 1
F8J CAT S1 1
F8J CAV S1 1
F8J CBB S1 1
F8J CBC S1 1
F8J CBD S1 1
F8J CBE S1 1
F8J CBF S1 1
F8J CBG S1 1
F8J CBH S1 1
F8J CBI S1 1
F8J NAW S1 1
F8J NAX S1 1
F8J NAZ S1 1
F8J NBK S1 1
F8J NBL S1 1
F8J SAE S1 1
F8J NAY F1 1
F8J C F1 1
F8J O F1 1
F8J CA F1 1
F8J CBF F2 1
F8J CBG F2 1
F8J CBD F2 1
F8J CAL F2 1
F8J NAZ F2 1
F8J CAJ F2 1
F8J CAG F2 1
F8J CAF F2 1
F8J CAI F2 1
F8J CBI F2 2
F8J CBH F2 2
F8J CBE F2 2
F8J CAN F2 2
F8J N F2 2
F8J CAK F2 2
F8J CAH F2 2
F8J CBC F2 2
F8J CAM F2 2
F8J O F3 1
F8J C F3 1
F8J CA F3 1
F8J N F3 1
F8J CAF F4 1
F8J CAI F4 1
F8J CBF F4 1
F8J CBG F4 1
F8J CAJ F4 1
F8J CAG F4 1
F8J CAH F4 2
F8J CAK F4 2
F8J CBH F4 2
F8J CBI F4 2
F8J CAM F4 2
F8J CBC F4 2
F8J NBK F5 1
F8J CAR F5 1
F8J CAT F5 1
F8J NBL F5 1
F8J CAS F5 1
F8J CAQ F5 1
F8J CAL F6 1
F8J CBD F6 1
F8J CBG F6 1
F8J CBF F6 1
F8J NAZ F6 1
F8J CAN F6 2
F8J CBE F6 2
F8J CBH F6 2
F8J CBI F6 2
F8J N F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id F8J
_pdbe_chem_comp_rdkit_properties.exactmw 545.294
_pdbe_chem_comp_rdkit_properties.amw 545.757
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 290.299
_pdbe_chem_comp_rdkit_properties.tpsa 80.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.577
_pdbe_chem_comp_rdkit_properties.CrippenMR 158.449
_pdbe_chem_comp_rdkit_properties.chi0v 19.763
_pdbe_chem_comp_rdkit_properties.chi1v 10.618
_pdbe_chem_comp_rdkit_properties.chi2v 4.588
_pdbe_chem_comp_rdkit_properties.chi3v 4.588
_pdbe_chem_comp_rdkit_properties.chi4v 3.044
_pdbe_chem_comp_rdkit_properties.chi0n 57.947
_pdbe_chem_comp_rdkit_properties.chi1n 29.498
_pdbe_chem_comp_rdkit_properties.chi2n 4.405
_pdbe_chem_comp_rdkit_properties.chi3n 4.405
_pdbe_chem_comp_rdkit_properties.chi4n 2.907
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.400
_pdbe_chem_comp_rdkit_properties.kappa1 6.899
_pdbe_chem_comp_rdkit_properties.kappa2 12.193
_pdbe_chem_comp_rdkit_properties.kappa3 6.788
_pdbe_chem_comp_rdkit_properties.Phi 2.157
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
F8J UniChem ChEMBL CHEMBL4172762
F8J UniChem PDBe F8J
F8J UniChem PubChem 137551963
F8J UniChem BindingDb 50366282
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
F8J N -1.397 -0.141 0.820 ETKDGv3 1
F8J CA -0.350 -0.474 1.783 ETKDGv3 2
F8J C 0.051 -1.917 1.677 ETKDGv3 3
F8J O 1.234 -2.246 1.964 ETKDGv3 4
F8J CAA 0.200 -4.317 -0.385 ETKDGv3 5
F8J CAB -1.735 -5.211 0.951 ETKDGv3 6
F8J CAC -5.489 6.027 -0.409 ETKDGv3 7
F8J CAF 6.232 -0.201 3.710 ETKDGv3 8
F8J CAG 4.868 0.199 3.254 ETKDGv3 9
F8J CAH -1.615 -0.034 -3.381 ETKDGv3 10
F8J CAI 6.955 -1.088 3.002 ETKDGv3 11
F8J CAJ 4.346 -0.323 2.129 ETKDGv3 12
F8J CAK -2.564 0.498 -2.591 ETKDGv3 13
F8J CAL 5.961 -2.745 -0.139 ETKDGv3 14
F8J CAM -0.272 -0.754 -1.447 ETKDGv3 15
F8J CAN -2.609 0.561 1.099 ETKDGv3 16
F8J CAO 3.867 -0.769 -1.775 ETKDGv3 17
F8J CAP 3.667 -1.872 -0.732 ETKDGv3 18
F8J CAQ -3.274 5.181 -1.008 ETKDGv3 19
F8J CAR -4.022 5.115 1.337 ETKDGv3 20
F8J CAS -3.645 3.697 -1.234 ETKDGv3 21
F8J CAT -3.797 3.597 1.196 ETKDGv3 22
F8J CAV -4.521 1.659 -0.151 ETKDGv3 23
F8J CBB 1.959 -1.434 -3.345 ETKDGv3 24
F8J CBC -0.401 -0.680 -2.792 ETKDGv3 25
F8J CBD 4.881 -2.013 0.133 ETKDGv3 26
F8J CBE -3.222 0.902 -0.036 ETKDGv3 27
F8J CBF 6.361 -1.646 1.776 ETKDGv3 28
F8J CBG 5.156 -1.294 1.373 ETKDGv3 29
F8J CBH -2.382 0.419 -1.132 ETKDGv3 30
F8J CBI -1.325 -0.163 -0.602 ETKDGv3 31
F8J CBJ -0.509 -4.293 0.974 ETKDGv3 32
F8J NAW 2.611 -0.495 -2.472 ETKDGv3 33
F8J NAX 0.570 -1.271 -3.672 ETKDGv3 34
F8J NAY -0.907 -2.921 1.309 ETKDGv3 35
F8J NAZ 6.951 -2.573 0.876 ETKDGv3 36
F8J NBK -4.099 5.823 0.036 ETKDGv3 37
F8J NBL -4.364 3.128 -0.077 ETKDGv3 38
F8J SAE 2.828 -2.576 -4.140 ETKDGv3 39
F8J H1 -0.714 -0.286 2.816 ETKDGv3 40
F8J H2 0.531 0.178 1.601 ETKDGv3 41
F8J H3 -0.463 -3.907 -1.177 ETKDGv3 42
F8J H4 1.127 -3.708 -0.346 ETKDGv3 43
F8J H5 0.485 -5.357 -0.652 ETKDGv3 44
F8J H6 -2.241 -5.189 1.940 ETKDGv3 45
F8J H7 -2.456 -4.882 0.172 ETKDGv3 46
F8J H8 -1.427 -6.258 0.739 ETKDGv3 47
F8J H9 -5.510 6.560 -1.384 ETKDGv3 48
F8J H10 -6.034 5.064 -0.511 ETKDGv3 49
F8J H11 -6.028 6.666 0.323 ETKDGv3 50
F8J H12 6.640 0.227 4.616 ETKDGv3 51
F8J H13 4.298 0.915 3.832 ETKDGv3 52
F8J H14 -1.730 0.013 -4.457 ETKDGv3 53
F8J H15 7.946 -1.382 3.323 ETKDGv3 54
F8J H16 3.359 -0.035 1.790 ETKDGv3 55
F8J H17 -3.438 0.971 -3.018 ETKDGv3 56
F8J H18 6.090 -3.369 -1.014 ETKDGv3 57
F8J H19 0.565 -1.257 -0.989 ETKDGv3 58
F8J H20 -2.967 0.789 2.095 ETKDGv3 59
F8J H21 4.202 0.161 -1.264 ETKDGv3 60
F8J H22 4.654 -1.059 -2.503 ETKDGv3 61
F8J H23 3.454 -2.840 -1.233 ETKDGv3 62
F8J H24 2.798 -1.619 -0.091 ETKDGv3 63
F8J H25 -2.207 5.243 -0.698 ETKDGv3 64
F8J H26 -3.350 5.743 -1.965 ETKDGv3 65
F8J H27 -3.181 5.544 1.923 ETKDGv3 66
F8J H28 -4.940 5.294 1.942 ETKDGv3 67
F8J H29 -2.709 3.137 -1.443 ETKDGv3 68
F8J H30 -4.297 3.622 -2.131 ETKDGv3 69
F8J H31 -4.281 3.081 2.054 ETKDGv3 70
F8J H32 -2.705 3.381 1.234 ETKDGv3 71
F8J H33 -5.210 1.323 0.654 ETKDGv3 72
F8J H34 -5.018 1.390 -1.108 ETKDGv3 73
F8J H35 0.187 -4.674 1.753 ETKDGv3 74
F8J H36 2.146 0.423 -2.292 ETKDGv3 75
F8J H37 0.243 -1.598 -4.610 ETKDGv3 76
F8J H38 -1.918 -2.659 1.275 ETKDGv3 77
F8J H39 7.902 -3.001 0.924 ETKDGv3 78
#