data_FD3
#
_chem_comp.id FD3
_chem_comp.name "N-ALPHA-(2-NAPHTHYLSULFONYL)-3-AMIDINO-L-PHENYLALANINE PIPERAZIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H27 N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-10-19
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 465.568
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FD3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1K1L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FD3 C65 C65 C 0 1 Y N N N N N -3.245 5.748 20.208 -0.606 0.814 2.960 C65 FD3 1
FD3 C66 C66 C 0 1 Y N N N N N -3.813 7.028 20.103 -0.634 -0.502 3.369 C66 FD3 2
FD3 C64 C64 C 0 1 Y N N N N N -1.896 5.564 19.825 0.221 1.721 3.597 C64 FD3 3
FD3 C63 C63 C 0 1 Y N N N N N -1.128 6.645 19.371 1.019 1.316 4.652 C63 FD3 4
FD3 C62 C62 C 0 1 Y N N N N N -1.707 7.924 19.276 0.994 0.003 5.074 C62 FD3 5
FD3 C61 C61 C 0 1 Y N N N N N -3.056 8.117 19.640 0.162 -0.916 4.436 C61 FD3 6
FD3 C25 C25 C 0 1 N N N N N N -3.694 9.474 19.544 0.131 -2.327 4.884 C25 FD3 7
FD3 N43 N43 N 0 1 N N N N N N -2.981 10.491 19.139 0.924 -2.733 5.935 N43 FD3 8
FD3 N54 N54 N 0 1 N N N N N N -4.956 9.614 19.886 -0.646 -3.183 4.286 N54 FD3 9
FD3 C34 C34 C 0 1 N N N N N N -4.090 4.560 20.713 -1.473 1.265 1.812 C34 FD3 10
FD3 C31 C31 C 0 1 N N S N N N -4.052 4.382 22.242 -0.706 1.099 0.499 C31 FD3 11
FD3 C35 C35 C 0 1 N N N N N N -2.733 4.759 22.885 -1.573 1.549 -0.648 C35 FD3 12
FD3 O36 O36 O 0 1 N N N N N N -2.706 5.896 23.353 -1.519 2.698 -1.035 O36 FD3 13
FD3 N81 N81 N 0 1 N N N N N N -1.653 3.922 22.912 -2.408 0.676 -1.244 N81 FD3 14
FD3 C71 C71 C 0 1 N N N N N N -1.595 2.734 22.030 -2.576 -0.690 -0.724 C71 FD3 15
FD3 C72 C72 C 0 1 N N N N N N -1.119 1.567 22.931 -4.075 -0.982 -0.606 C72 FD3 16
FD3 C74 C74 C 0 1 N N N N N N 0.130 3.304 24.376 -4.645 0.658 -2.211 C74 FD3 17
FD3 C75 C75 C 0 1 N N N N N N -0.372 4.427 23.437 -3.187 1.060 -2.432 C75 FD3 18
FD3 N40 N40 N 0 1 N N N N N N -0.025 1.937 23.806 -4.721 -0.774 -1.907 N40 FD3 19
FD3 N29 N29 N 0 1 N N N N N N -5.156 5.101 22.893 0.511 1.912 0.539 N29 FD3 20
FD3 S12 S12 S 0 1 N N N N N N -6.016 4.356 24.182 1.982 1.215 0.233 S12 FD3 21
FD3 O32 O32 O 0 1 N N N N N N -7.070 5.238 24.608 2.913 2.288 0.178 O32 FD3 22
FD3 O33 O33 O 0 1 N N N N N N -6.266 2.988 23.875 2.068 0.096 1.105 O33 FD3 23
FD3 C2 C2 C 0 1 Y N N N N N -4.759 4.410 25.360 1.921 0.549 -1.396 C2 FD3 24
FD3 C3 C3 C 0 1 Y N N N N N -4.471 5.648 25.958 2.304 1.343 -2.476 C3 FD3 25
FD3 C4 C4 C 0 1 Y N N N N N -3.443 5.755 26.929 2.269 0.859 -3.748 C4 FD3 26
FD3 C9 C9 C 0 1 Y N N N N N -3.019 3.330 26.677 1.452 -1.265 -2.880 C9 FD3 27
FD3 C10 C10 C 0 1 Y N N N N N -2.710 4.586 27.297 1.841 -0.458 -3.979 C10 FD3 28
FD3 C1 C1 C 0 1 Y N N N N N -4.054 3.259 25.707 1.507 -0.733 -1.581 C1 FD3 29
FD3 C5 C5 C 0 1 Y N N N N N -1.668 4.628 28.275 1.791 -0.993 -5.277 C5 FD3 30
FD3 C6 C6 C 0 1 Y N N N N N -0.945 3.441 28.625 1.372 -2.275 -5.463 C6 FD3 31
FD3 C7 C7 C 0 1 Y N N N N N -1.266 2.211 28.000 0.989 -3.068 -4.383 C7 FD3 32
FD3 C8 C8 C 0 1 Y N N N N N -2.291 2.150 27.033 1.024 -2.584 -3.111 C8 FD3 33
FD3 H661 1H66 H 0 0 N N N N N N -4.868 7.180 20.388 -1.281 -1.210 2.871 H661 FD3 34
FD3 H641 1H64 H 0 0 N N N N N N -1.436 4.563 19.881 0.244 2.750 3.270 H641 FD3 35
FD3 H631 1H63 H 0 0 N N N N N N -0.073 6.490 19.090 1.663 2.029 5.145 H631 FD3 36
FD3 H621 1H62 H 0 0 N N N N N N -1.104 8.775 18.917 1.618 -0.312 5.898 H621 FD3 37
FD3 H431 1H43 H 0 0 N N N N N N -2.568 10.260 18.235 0.904 -3.658 6.229 H431 FD3 38
FD3 H432 2H43 H 0 0 N N N N N N -3.414 11.412 19.074 1.507 -2.097 6.378 H432 FD3 39
FD3 H541 1H54 H 0 0 N N N N N N -5.351 10.516 19.621 -1.205 -2.897 3.547 H541 FD3 40
FD3 H341 1H34 H 0 0 N N N N N N -3.791 3.617 20.199 -2.379 0.660 1.783 H341 FD3 41
FD3 H342 2H34 H 0 0 N N N N N N -5.142 4.643 20.352 -1.739 2.313 1.948 H342 FD3 42
FD3 H311 1H31 H 0 0 N N N N N N -4.174 3.286 22.403 -0.439 0.051 0.363 H311 FD3 43
FD3 H711 1H71 H 0 0 N N N N N N -0.966 2.882 21.121 -2.116 -1.402 -1.410 H711 FD3 44
FD3 H712 2H71 H 0 0 N N N N N N -2.552 2.526 21.497 -2.107 -0.769 0.256 H712 FD3 45
FD3 H721 1H72 H 0 0 N N N N N N -0.854 0.674 22.318 -4.220 -2.015 -0.289 H721 FD3 46
FD3 H722 2H72 H 0 0 N N N N N N -1.969 1.142 23.514 -4.518 -0.311 0.130 H722 FD3 47
FD3 H741 1H74 H 0 0 N N N N N N -0.364 3.374 25.373 -5.221 0.870 -3.112 H741 FD3 48
FD3 H742 2H74 H 0 0 N N N N N N 1.187 3.487 24.679 -5.053 1.229 -1.377 H742 FD3 49
FD3 H751 1H75 H 0 0 N N N N N N -0.442 5.429 23.922 -3.122 2.138 -2.583 H751 FD3 50
FD3 H752 2H75 H 0 0 N N N N N N 0.359 4.722 22.648 -2.792 0.543 -3.307 H752 FD3 51
FD3 H401 1H40 H 0 0 N N N N N N 0.844 1.707 23.323 -5.698 -0.993 -1.784 H401 FD3 52
FD3 H291 1H29 H 0 0 N N N N N N -5.825 5.384 22.177 0.456 2.859 0.744 H291 FD3 53
FD3 H31 1H3 H 0 1 N N N N N N -5.053 6.538 25.665 2.633 2.357 -2.302 H31 FD3 54
FD3 H41 1H4 H 0 1 N N N N N N -3.217 6.731 27.390 2.568 1.486 -4.575 H41 FD3 55
FD3 H11 1H1 H 0 1 N N N N N N -4.312 2.304 25.220 1.218 -1.337 -0.734 H11 FD3 56
FD3 H51 1H5 H 0 1 N N N N N N -1.420 5.585 28.764 2.085 -0.390 -6.124 H51 FD3 57
FD3 H61 1H6 H 0 1 N N N N N N -0.139 3.474 29.378 1.335 -2.683 -6.462 H61 FD3 58
FD3 H71 1H7 H 0 1 N N N N N N -0.714 1.295 28.268 0.660 -4.081 -4.557 H71 FD3 59
FD3 H81 1H8 H 0 1 N N N N N N -2.522 1.183 26.557 0.724 -3.210 -2.284 H81 FD3 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FD3 C65 C66 DOUB Y N 1
FD3 C65 C64 SING Y N 2
FD3 C65 C34 SING N N 3
FD3 C66 C61 SING Y N 4
FD3 C66 H661 SING N N 5
FD3 C64 C63 DOUB Y N 6
FD3 C64 H641 SING N N 7
FD3 C63 C62 SING Y N 8
FD3 C63 H631 SING N N 9
FD3 C62 C61 DOUB Y N 10
FD3 C62 H621 SING N N 11
FD3 C61 C25 SING N N 12
FD3 C25 N43 SING N N 13
FD3 C25 N54 DOUB N Z 14
FD3 N43 H431 SING N N 15
FD3 N43 H432 SING N N 16
FD3 N54 H541 SING N N 17
FD3 C34 C31 SING N N 18
FD3 C34 H341 SING N N 19
FD3 C34 H342 SING N N 20
FD3 C31 C35 SING N N 21
FD3 C31 N29 SING N N 22
FD3 C31 H311 SING N N 23
FD3 C35 O36 DOUB N N 24
FD3 C35 N81 SING N N 25
FD3 N81 C71 SING N N 26
FD3 N81 C75 SING N N 27
FD3 C71 C72 SING N N 28
FD3 C71 H711 SING N N 29
FD3 C71 H712 SING N N 30
FD3 C72 N40 SING N N 31
FD3 C72 H721 SING N N 32
FD3 C72 H722 SING N N 33
FD3 C74 C75 SING N N 34
FD3 C74 N40 SING N N 35
FD3 C74 H741 SING N N 36
FD3 C74 H742 SING N N 37
FD3 C75 H751 SING N N 38
FD3 C75 H752 SING N N 39
FD3 N40 H401 SING N N 40
FD3 N29 S12 SING N N 41
FD3 N29 H291 SING N N 42
FD3 S12 O32 DOUB N N 43
FD3 S12 O33 DOUB N N 44
FD3 S12 C2 SING N N 45
FD3 C2 C3 DOUB Y N 46
FD3 C2 C1 SING Y N 47
FD3 C3 C4 SING Y N 48
FD3 C3 H31 SING N N 49
FD3 C4 C10 DOUB Y N 50
FD3 C4 H41 SING N N 51
FD3 C9 C10 SING Y N 52
FD3 C9 C1 DOUB Y N 53
FD3 C9 C8 SING Y N 54
FD3 C10 C5 SING Y N 55
FD3 C1 H11 SING N N 56
FD3 C5 C6 DOUB Y N 57
FD3 C5 H51 SING N N 58
FD3 C6 C7 SING Y N 59
FD3 C6 H61 SING N N 60
FD3 C7 C8 DOUB Y N 61
FD3 C7 H71 SING N N 62
FD3 C8 H81 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FD3 SMILES ACDLabs 10.04 O=C(N1CCNCC1)C(NS(=O)(=O)c3cc2ccccc2cc3)Cc4cc(C(=[N@H])N)ccc4
FD3 SMILES_CANONICAL CACTVS 3.341 NC(=N)c1cccc(C[C@H](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N4CCNCC4)c1
FD3 SMILES CACTVS 3.341 NC(=N)c1cccc(C[CH](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N4CCNCC4)c1
FD3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(/c1cccc(c1)C[C@@H](C(=O)N2CCNCC2)NS(=O)(=O)c3ccc4ccccc4c3)\N"
FD3 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1cccc(c1)CC(C(=O)N2CCNCC2)NS(=O)(=O)c3ccc4ccccc4c3)N"
FD3 InChI InChI 1.03 InChI=1S/C24H27N5O3S/c25-23(26)20-7-3-4-17(14-20)15-22(24(30)29-12-10-27-11-13-29)28-33(31,32)21-9-8-18-5-1-2-6-19(18)16-21/h1-9,14,16,22,27-28H,10-13,15H2,(H3,25,26)/t22-/m0/s1
FD3 InChIKey InChI 1.03 ZVDMTWWOKZXJOE-QFIPXVFZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FD3 "SYSTEMATIC NAME" ACDLabs 10.04 3-{(2S)-2-[(naphthalen-2-ylsulfonyl)amino]-3-oxo-3-piperazin-1-ylpropyl}benzenecarboximidamide
FD3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-[(2S)-2-(naphthalen-2-ylsulfonylamino)-3-oxo-3-piperazin-1-yl-propyl]benzenecarboximidamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FD3 'Create component' 2001-10-19 RCSB
FD3 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FD3 C65 C 9.002 3.090 1
FD3 C66 C 7.702 2.340 2
FD3 C64 C 9.002 4.590 3
FD3 C63 C 7.702 5.340 4
FD3 C62 C 6.404 4.590 5
FD3 C61 C 6.404 3.090 6
FD3 C25 C 5.104 2.340 7
FD3 N43 N 3.805 3.090 8
FD3 N54 N 5.104 0.840 9
FD3 C34 C 10.301 2.340 10
FD3 C31 C 10.301 0.840 11
FD3 C35 C 9.002 0.090 12
FD3 O36 O 7.702 0.840 13
FD3 N81 N 9.002 -1.410 14
FD3 C71 C 10.301 -2.160 15
FD3 C72 C 10.301 -3.660 16
FD3 C74 C 7.702 -3.660 17
FD3 C75 C 7.702 -2.160 18
FD3 N40 N 9.002 -4.410 19
FD3 N29 N 11.600 0.090 20
FD3 S12 S 12.899 0.840 21
FD3 O32 O 12.149 2.139 22
FD3 O33 O 13.649 -0.459 23
FD3 C2 C 14.198 1.590 24
FD3 C3 C 14.198 3.090 25
FD3 C4 C 15.497 3.840 26
FD3 C9 C 16.796 1.590 27
FD3 C10 C 16.796 3.090 28
FD3 C1 C 15.497 0.840 29
FD3 C5 C 18.137 3.892 30
FD3 C6 C 19.496 3.121 31
FD3 C7 C 19.496 1.559 32
FD3 C8 C 18.137 0.788 33
FD3 H541 H 3.805 0.090 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FD3 C65 C66 DOUBLE NONE 1
FD3 C65 C64 SINGLE NONE 2
FD3 C65 C34 SINGLE NONE 3
FD3 C66 C61 SINGLE NONE 4
FD3 C64 C63 DOUBLE NONE 5
FD3 C63 C62 SINGLE NONE 6
FD3 C62 C61 DOUBLE NONE 7
FD3 C61 C25 SINGLE ENDUPRIGHT 8
FD3 C25 N43 SINGLE ENDUPRIGHT 9
FD3 C25 N54 DOUBLE NONE 10
FD3 C31 C34 SINGLE BEGINDASH 11
FD3 C31 C35 SINGLE NONE 12
FD3 C31 N29 SINGLE NONE 13
FD3 C35 O36 DOUBLE NONE 14
FD3 C35 N81 SINGLE NONE 15
FD3 N81 C71 SINGLE NONE 16
FD3 N81 C75 SINGLE NONE 17
FD3 C71 C72 SINGLE NONE 18
FD3 C72 N40 SINGLE NONE 19
FD3 C74 C75 SINGLE NONE 20
FD3 C74 N40 SINGLE NONE 21
FD3 N29 S12 SINGLE NONE 22
FD3 S12 O32 DOUBLE NONE 23
FD3 S12 O33 DOUBLE NONE 24
FD3 S12 C2 SINGLE NONE 25
FD3 C2 C3 DOUBLE NONE 26
FD3 C2 C1 SINGLE NONE 27
FD3 C3 C4 SINGLE NONE 28
FD3 C4 C10 DOUBLE NONE 29
FD3 C9 C10 SINGLE NONE 30
FD3 C9 C1 DOUBLE NONE 31
FD3 C9 C8 SINGLE NONE 32
FD3 C10 C5 SINGLE NONE 33
FD3 C5 C6 DOUBLE NONE 34
FD3 C6 C7 SINGLE NONE 35
FD3 C7 C8 DOUBLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FD3 MurckoScaffold S1 scaffold 'O=C([C@H](Cc1ccccc1)NS(=O)(=O)c1ccc2ccccc2c1)N1CCNCC1' InChI=1S/C23H25N3O3S/c27-23(26-14-12-24-13-15-26)22(16-18-6-2-1-3-7-18)25-30(28,29)21-11-10-19-8-4-5-9-20(19)17-21/h1-11,17,22,24-25H,12-16H2/t22-/m0/s1 FWXDGRWCDSHSRX-QFIPXVFZSA-N
FD3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
FD3 napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
FD3 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
FD3 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
FD3 piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
FD3 Z45617795 F6 fragment CS(=O)(=O)NCCc1ccccc1 InChI=1S/C9H13NO2S/c1-13(11,12)10-8-7-9-5-3-2-4-6-9/h2-6,10H,7-8H2,1H3 JGDDFCYMSLNOGJ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FD3 C65 S1 1
FD3 C66 S1 1
FD3 C64 S1 1
FD3 C63 S1 1
FD3 C62 S1 1
FD3 C61 S1 1
FD3 C34 S1 1
FD3 C31 S1 1
FD3 C35 S1 1
FD3 O36 S1 1
FD3 N81 S1 1
FD3 C71 S1 1
FD3 C72 S1 1
FD3 C74 S1 1
FD3 C75 S1 1
FD3 N40 S1 1
FD3 N29 S1 1
FD3 S12 S1 1
FD3 O32 S1 1
FD3 O33 S1 1
FD3 C2 S1 1
FD3 C3 S1 1
FD3 C4 S1 1
FD3 C9 S1 1
FD3 C10 S1 1
FD3 C1 S1 1
FD3 C5 S1 1
FD3 C6 S1 1
FD3 C7 S1 1
FD3 C8 S1 1
FD3 N81 F1 1
FD3 C35 F1 1
FD3 O36 F1 1
FD3 C31 F1 1
FD3 C2 F2 1
FD3 C3 F2 1
FD3 C4 F2 1
FD3 C10 F2 1
FD3 C9 F2 1
FD3 C1 F2 1
FD3 C8 F2 1
FD3 C7 F2 1
FD3 C6 F2 1
FD3 C5 F2 1
FD3 O36 F3 1
FD3 C35 F3 1
FD3 C31 F3 1
FD3 N29 F3 1
FD3 C65 F4 1
FD3 C66 F4 1
FD3 C61 F4 1
FD3 C62 F4 1
FD3 C63 F4 1
FD3 C64 F4 1
FD3 C2 F4 2
FD3 C3 F4 2
FD3 C4 F4 2
FD3 C10 F4 2
FD3 C9 F4 2
FD3 C1 F4 2
FD3 C9 F4 3
FD3 C10 F4 3
FD3 C5 F4 3
FD3 C6 F4 3
FD3 C7 F4 3
FD3 C8 F4 3
FD3 N81 F5 1
FD3 C71 F5 1
FD3 C72 F5 1
FD3 N40 F5 1
FD3 C74 F5 1
FD3 C75 F5 1
FD3 C2 F6 1
FD3 S12 F6 1
FD3 O32 F6 1
FD3 O33 F6 1
FD3 N29 F6 1
FD3 C31 F6 1
FD3 C34 F6 1
FD3 C65 F6 1
FD3 C66 F6 1
FD3 C61 F6 1
FD3 C62 F6 1
FD3 C63 F6 1
FD3 C64 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FD3
_pdbe_chem_comp_rdkit_properties.exactmw 465.183
_pdbe_chem_comp_rdkit_properties.amw 465.579
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 231.115
_pdbe_chem_comp_rdkit_properties.tpsa 128.380
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.799
_pdbe_chem_comp_rdkit_properties.CrippenMR 126.501
_pdbe_chem_comp_rdkit_properties.chi0v 16.686
_pdbe_chem_comp_rdkit_properties.chi1v 9.903
_pdbe_chem_comp_rdkit_properties.chi2v 4.773
_pdbe_chem_comp_rdkit_properties.chi3v 4.773
_pdbe_chem_comp_rdkit_properties.chi4v 3.090
_pdbe_chem_comp_rdkit_properties.chi0n 42.869
_pdbe_chem_comp_rdkit_properties.chi1n 21.699
_pdbe_chem_comp_rdkit_properties.chi2n 3.630
_pdbe_chem_comp_rdkit_properties.chi3n 3.630
_pdbe_chem_comp_rdkit_properties.chi4n 2.224
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.270
_pdbe_chem_comp_rdkit_properties.kappa1 6.878
_pdbe_chem_comp_rdkit_properties.kappa2 9.697
_pdbe_chem_comp_rdkit_properties.kappa3 5.387
_pdbe_chem_comp_rdkit_properties.Phi 2.021
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FD3 UniChem ChEMBL CHEMBL1161244
FD3 UniChem PDBe FD3
FD3 UniChem ZINC ZINC000002043468
FD3 UniChem PubChem 446606
FD3 UniChem Nikkaji J877.791H
FD3 UniChem BindingDb 50472444
FD3 UniChem BRENDA 53160
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FD3 C65 -0.764 1.262 -1.796 ETKDGv3 1
FD3 C66 -2.090 1.451 -1.671 ETKDGv3 2
FD3 C64 0.157 2.401 -1.573 ETKDGv3 3
FD3 C63 -0.328 3.606 -1.258 ETKDGv3 4
FD3 C62 -1.784 3.811 -1.124 ETKDGv3 5
FD3 C61 -2.638 2.785 -1.309 ETKDGv3 6
FD3 C25 -4.105 2.967 -1.177 ETKDGv3 7
FD3 N43 -4.653 4.006 -0.355 ETKDGv3 8
FD3 N54 -4.905 2.158 -1.798 ETKDGv3 9
FD3 C34 -0.203 -0.106 -2.095 ETKDGv3 10
FD3 C31 0.357 -0.783 -0.824 ETKDGv3 11
FD3 C35 -0.731 -0.954 0.219 ETKDGv3 12
FD3 O36 -0.626 -0.308 1.297 ETKDGv3 13
FD3 N81 -1.898 -1.775 -0.001 ETKDGv3 14
FD3 C71 -1.816 -3.033 -0.759 ETKDGv3 15
FD3 C72 -3.108 -3.840 -0.617 ETKDGv3 16
FD3 C74 -3.894 -2.513 1.282 ETKDGv3 17
FD3 C75 -3.200 -1.355 0.536 ETKDGv3 18
FD3 N40 -3.512 -3.852 0.792 ETKDGv3 19
FD3 N29 0.981 -2.074 -1.160 ETKDGv3 20
FD3 S12 1.993 -2.647 0.138 ETKDGv3 21
FD3 O32 2.691 -3.904 -0.300 ETKDGv3 22
FD3 O33 1.152 -2.971 1.342 ETKDGv3 23
FD3 C2 3.204 -1.439 0.562 ETKDGv3 24
FD3 C3 4.262 -1.235 -0.240 ETKDGv3 25
FD3 C4 5.257 -0.193 0.087 ETKDGv3 26
FD3 C9 3.927 0.348 2.069 ETKDGv3 27
FD3 C10 5.099 0.562 1.184 ETKDGv3 28
FD3 C1 3.029 -0.604 1.774 ETKDGv3 29
FD3 C5 6.063 1.620 1.544 ETKDGv3 30
FD3 C6 5.870 2.361 2.643 ETKDGv3 31
FD3 C7 4.698 2.148 3.525 ETKDGv3 32
FD3 C8 3.784 1.206 3.261 ETKDGv3 33
FD3 H661 -2.767 0.619 -1.817 ETKDGv3 34
FD3 H641 1.227 2.259 -1.663 ETKDGv3 35
FD3 H631 0.348 4.436 -1.099 ETKDGv3 36
FD3 H621 -2.139 4.807 -0.899 ETKDGv3 37
FD3 H431 -4.053 4.569 0.286 ETKDGv3 38
FD3 H432 -5.685 4.165 -0.319 ETKDGv3 39
FD3 H541 -5.943 2.243 -1.725 ETKDGv3 40
FD3 H341 0.616 0.012 -2.838 ETKDGv3 41
FD3 H342 -0.971 -0.749 -2.574 ETKDGv3 42
FD3 H311 1.134 -0.095 -0.421 ETKDGv3 43
FD3 H711 -0.984 -3.649 -0.356 ETKDGv3 44
FD3 H712 -1.627 -2.829 -1.833 ETKDGv3 45
FD3 H721 -2.927 -4.881 -0.962 ETKDGv3 46
FD3 H722 -3.913 -3.403 -1.250 ETKDGv3 47
FD3 H741 -3.625 -2.453 2.359 ETKDGv3 48
FD3 H742 -4.997 -2.377 1.210 ETKDGv3 49
FD3 H751 -3.104 -0.480 1.216 ETKDGv3 50
FD3 H752 -3.844 -1.035 -0.312 ETKDGv3 51
FD3 H401 -4.337 -4.489 0.890 ETKDGv3 52
FD3 H291 1.621 -1.937 -1.976 ETKDGv3 53
FD3 H31 4.392 -1.824 -1.140 ETKDGv3 54
FD3 H41 6.105 -0.045 -0.570 ETKDGv3 55
FD3 H11 2.168 -0.759 2.413 ETKDGv3 56
FD3 H51 6.931 1.803 0.921 ETKDGv3 57
FD3 H61 6.584 3.134 2.896 ETKDGv3 58
FD3 H71 4.583 2.772 4.402 ETKDGv3 59
FD3 H81 2.940 1.079 3.928 ETKDGv3 60
#