data_FDA
#
_chem_comp.id FDA
_chem_comp.name "DIHYDROFLAVINE-ADENINE DINUCLEOTIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H35 N9 O15 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 787.566
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FDA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FNC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FDA PA AP P 0 1 N N S N N N 24.445 -0.811 -0.526 -1.668 -0.576 -3.237 PA FDA 1
FDA O1A AO1 O 0 1 N N N N N N 24.815 0.609 -0.510 -0.812 -1.776 -3.378 O1A FDA 2
FDA O2A AO2 O 0 1 N N N N N N 25.166 -1.918 -1.277 -3.190 -1.029 -2.973 O2A FDA 3
FDA O5B AO5* O 0 1 N N N N N N 22.867 -1.044 -0.870 -1.595 0.296 -4.588 O5B FDA 4
FDA C5B AC5* C 0 1 N N N N N N 22.032 0.019 -0.367 -2.066 -0.540 -5.647 C5B FDA 5
FDA C4B AC4* C 0 1 N N R N N N 20.855 0.062 -1.279 -2.022 0.232 -6.966 C4B FDA 6
FDA O4B AO4* O 0 1 N N N N N N 20.092 -1.107 -0.914 -0.667 0.606 -7.269 O4B FDA 7
FDA C3B AC3* C 0 1 N N S N N N 19.827 1.173 -1.097 -2.521 -0.664 -8.116 C3B FDA 8
FDA O3B AO3* O 0 1 N N N N N N 20.237 2.438 -1.536 -3.670 -0.092 -8.743 O3B FDA 9
FDA C2B AC2* C 0 1 N N R N N N 18.617 0.561 -1.842 -1.327 -0.707 -9.105 C2B FDA 10
FDA O2B AO2* O 0 1 N N N N N N 18.780 0.712 -3.262 -1.782 -0.618 -10.456 O2B FDA 11
FDA C1B AC1* C 0 1 N N R N N N 18.796 -0.903 -1.586 -0.528 0.559 -8.705 C1B FDA 12
FDA N9A AN9 N 0 1 Y N N N N N 17.741 -1.487 -0.745 0.880 0.425 -9.083 N9A FDA 13
FDA C8A AC8 C 0 1 Y N N N N N 17.671 -1.612 0.663 1.859 -0.171 -8.346 C8A FDA 14
FDA N7A AN7 N 0 1 Y N N N N N 16.601 -2.322 1.028 2.993 -0.111 -8.982 N7A FDA 15
FDA C5A AC5 C 0 1 Y N N N N N 15.986 -2.639 -0.164 2.814 0.525 -10.165 C5A FDA 16
FDA C6A AC6 C 0 1 Y N N N N N 14.774 -3.357 -0.463 3.653 0.872 -11.237 C6A FDA 17
FDA N6A AN6 N 0 1 N N N N N N 14.019 -3.877 0.473 4.999 0.551 -11.216 N6A FDA 18
FDA N1A AN1 N 0 1 Y N N N N N 14.464 -3.459 -1.796 3.123 1.515 -12.273 N1A FDA 19
FDA C2A AC2 C 0 1 Y N N N N N 15.240 -2.921 -2.788 1.840 1.825 -12.302 C2A FDA 20
FDA N3A AN3 N 0 1 Y N N N N N 16.347 -2.242 -2.593 1.017 1.521 -11.320 N3A FDA 21
FDA C4A AC4 C 0 1 Y N N N N N 16.665 -2.143 -1.286 1.455 0.872 -10.246 C4A FDA 22
FDA N1 N1 N 0 1 N N N N N N 23.963 1.281 9.306 2.543 -1.358 7.432 N1 FDA 23
FDA C2 C2 C 0 1 N N N N N N 24.235 0.345 10.227 3.864 -1.405 7.691 C2 FDA 24
FDA O2 O2 O 0 1 N N N N N N 24.041 -0.843 9.994 4.563 -2.196 7.088 O2 FDA 25
FDA N3 N3 N 0 1 N N N N N N 24.656 0.759 11.508 4.422 -0.591 8.605 N3 FDA 26
FDA C4 C4 C 0 1 N N N N N N 24.879 2.037 11.850 3.669 0.294 9.288 C4 FDA 27
FDA O4 O4 O 0 1 N N N N N N 25.361 2.319 12.882 4.181 1.030 10.115 O4 FDA 28
FDA C4X C4A C 0 1 N N N N N N 24.671 3.028 10.810 2.290 0.362 9.037 C4X FDA 29
FDA N5 N5 N 0 1 N N N N N N 24.815 4.296 11.098 1.472 1.281 9.740 N5 FDA 30
FDA C5X C5A C 0 1 Y N N N N N 24.493 5.165 10.092 0.079 1.127 9.675 C5X FDA 31
FDA C6 C6 C 0 1 Y N N N N N 24.716 6.507 10.302 -0.750 1.813 10.544 C6 FDA 32
FDA C7 C7 C 0 1 Y N N N N N 24.328 7.405 9.333 -2.123 1.644 10.462 C7 FDA 33
FDA C7M C7M C 0 1 N N N N N N 24.495 8.861 9.529 -3.029 2.388 11.408 C7M FDA 34
FDA C8 C8 C 0 1 Y N N N N N 23.949 6.964 8.047 -2.663 0.790 9.520 C8 FDA 35
FDA C8M C8M C 0 1 N N N N N N 23.641 7.970 6.986 -4.157 0.611 9.439 C8M FDA 36
FDA C9 C9 C 0 1 Y N N N N N 23.828 5.632 7.768 -1.837 0.105 8.644 C9 FDA 37
FDA C9A C9A C 0 1 Y N N N N N 24.118 4.732 8.785 -0.466 0.269 8.718 C9A FDA 38
FDA N10 N10 N 0 1 N N N N N N 23.908 3.406 8.597 0.386 -0.419 7.841 N10 FDA 39
FDA C10 C10 C 0 1 N N N N N N 24.187 2.518 9.579 1.737 -0.471 8.104 C10 FDA 40
FDA "C1'" C1* C 0 1 N N N N N N 23.537 2.866 7.275 -0.158 -1.080 6.653 "C1'" FDA 41
FDA "C2'" C2* C 0 1 N N S N N N 24.851 2.506 6.446 -0.038 -0.144 5.448 "C2'" FDA 42
FDA "O2'" O2* O 0 1 N N N N N N 25.548 3.726 6.154 -0.852 1.011 5.660 "O2'" FDA 43
FDA "C3'" C3* C 0 1 N N S N N N 24.587 1.796 5.101 -0.506 -0.873 4.187 "C3'" FDA 44
FDA "O3'" O3* O 0 1 N N N N N N 23.679 2.559 4.270 0.307 -2.028 3.975 "O3'" FDA 45
FDA "C4'" C4* C 0 1 N N R N N N 24.100 0.358 5.267 -0.386 0.062 2.983 "C4'" FDA 46
FDA "O4'" O4* O 0 1 N N N N N N 25.040 -0.396 6.073 -1.200 1.218 3.195 "O4'" FDA 47
FDA "C5'" C5* C 0 1 N N N N N N 23.883 -0.338 3.893 -0.854 -0.666 1.722 "C5'" FDA 48
FDA "O5'" O5* O 0 1 N N N N N N 25.089 -0.148 3.066 -0.742 0.208 0.597 "O5'" FDA 49
FDA P P P 0 1 N N R N N N 25.643 -1.363 2.139 -1.248 -0.619 -0.687 P FDA 50
FDA O1P O1P O 0 1 N N N N N N 26.850 -0.739 1.450 -0.400 -1.818 -0.867 O1P FDA 51
FDA O2P O2P O 0 1 N N N N N N 25.687 -2.714 2.851 -2.777 -1.072 -0.465 O2P FDA 52
FDA O3P O3P O 0 1 N N N N N N 24.395 -1.302 1.055 -1.149 0.310 -1.997 O3P FDA 53
FDA HOA2 2HOA H 0 0 N N N N N N 24.926 -2.837 -1.287 -3.712 -0.220 -2.887 HOA2 FDA 54
FDA H51A AH51 H 0 0 N N N N N N 21.762 -0.092 0.709 -1.431 -1.423 -5.721 H51A FDA 55
FDA H52A AH52 H 0 0 N N N N N N 22.559 0.996 -0.268 -3.091 -0.847 -5.439 H52A FDA 56
FDA H4B AH4* H 0 1 N N N N N N 21.284 0.176 -2.301 -2.645 1.123 -6.894 H4B FDA 57
FDA H3B AH3* H 0 1 N N N N N N 19.611 1.430 -0.033 -2.747 -1.665 -7.747 H3B FDA 58
FDA HO3A AHO3 H 0 0 N N N N N N 19.596 3.130 -1.422 -3.896 -0.665 -9.488 HO3A FDA 59
FDA H2B AH2* H 0 1 N N N N N N 17.650 1.015 -1.522 -0.729 -1.607 -8.956 H2B FDA 60
FDA HO2A AHO2 H 0 0 N N N N N N 18.037 0.336 -3.719 -2.268 -1.433 -10.642 HO2A FDA 61
FDA H1B AH1* H 0 1 N N N N N N 18.747 -1.414 -2.575 -0.964 1.447 -9.162 H1B FDA 62
FDA H8A AH8 H 0 1 N N N N N N 18.378 -1.198 1.401 1.716 -0.625 -7.377 H8A FDA 63
FDA H61A AH61 H 0 0 N N N N N N 13.160 -4.385 0.261 5.567 0.796 -11.963 H61A FDA 64
FDA H62A AH62 H 0 0 N N N N N N 13.783 -3.132 1.129 5.373 0.081 -10.455 H62A FDA 65
FDA H2A AH2 H 0 1 N N N N N N 14.945 -3.046 -3.843 1.451 2.349 -13.162 H2A FDA 66
FDA HN1 HN1 H 0 1 N N N N N N 22.989 1.181 9.017 2.160 -1.953 6.769 HN1 FDA 67
FDA HN3 HN3 H 0 1 N N N N N N 24.812 0.076 12.249 5.376 -0.643 8.775 HN3 FDA 68
FDA HN5 HN5 H 0 1 N N N N N N 25.764 4.475 11.424 1.867 2.002 10.254 HN5 FDA 69
FDA H6 H6 H 0 1 N N N N N N 25.197 6.856 11.230 -0.329 2.478 11.284 H6 FDA 70
FDA HM71 1HM7 H 0 0 N N N N N N 24.180 9.588 8.744 -3.304 3.347 10.969 HM71 FDA 71
FDA HM72 2HM7 H 0 0 N N N N N N 23.989 9.141 10.482 -3.929 1.800 11.588 HM72 FDA 72
FDA HM73 3HM7 H 0 0 N N N N N N 25.565 9.056 9.771 -2.510 2.557 12.352 HM73 FDA 73
FDA HM81 1HM8 H 0 0 N N N N N N 23.341 7.621 5.970 -4.460 -0.213 10.084 HM81 FDA 74
FDA HM82 2HM8 H 0 0 N N N N N N 22.856 8.663 7.369 -4.651 1.527 9.764 HM82 FDA 75
FDA HM83 3HM8 H 0 0 N N N N N N 24.512 8.657 6.883 -4.441 0.391 8.410 HM83 FDA 76
FDA H9 H9 H 0 1 N N N N N N 23.510 5.298 6.766 -2.264 -0.558 7.905 H9 FDA 77
FDA "H1'1" 1H1* H 0 0 N N N N N N 22.843 1.996 7.357 0.399 -1.996 6.458 "H1'1" FDA 78
FDA "H1'2" 2H1* H 0 0 N N N N N N 22.865 3.557 6.714 -1.207 -1.323 6.821 "H1'2" FDA 79
FDA "H2'" H2* H 0 1 N N N N N N 25.434 1.800 7.082 1.000 0.160 5.327 "H2'" FDA 80
FDA "HO2'" *HO2 H 0 0 N N N N N N 26.330 3.511 5.660 -1.758 0.696 5.780 "HO2'" FDA 81
FDA "H3'" H3* H 0 1 N N N N N N 25.573 1.738 4.584 -1.546 -1.178 4.308 "H3'" FDA 82
FDA "HO3'" *HO3 H 0 0 N N N N N N 23.516 2.122 3.442 1.216 -1.715 3.873 "HO3'" FDA 83
FDA "H4'" H4* H 0 1 N N N N N N 23.113 0.389 5.786 0.652 0.367 2.862 "H4'" FDA 84
FDA "HO4'" *HO4 H 0 0 N N N N N N 24.737 -1.290 6.176 -2.109 0.904 3.297 "HO4'" FDA 85
FDA "H5'1" 1H5* H 0 0 N N N N N N 23.605 -1.412 3.999 -0.233 -1.547 1.560 "H5'1" FDA 86
FDA "H5'2" 2H5* H 0 0 N N N N N N 22.956 0.011 3.380 -1.894 -0.971 1.843 "H5'2" FDA 87
FDA HOP2 2HOP H 0 0 N N N N N N 26.010 -3.424 2.309 -3.295 -0.263 -0.352 HOP2 FDA 88
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FDA PA O1A DOUB N N 1
FDA PA O2A SING N N 2
FDA PA O5B SING N N 3
FDA PA O3P SING N N 4
FDA O2A HOA2 SING N N 5
FDA O5B C5B SING N N 6
FDA C5B C4B SING N N 7
FDA C5B H51A SING N N 8
FDA C5B H52A SING N N 9
FDA C4B O4B SING N N 10
FDA C4B C3B SING N N 11
FDA C4B H4B SING N N 12
FDA O4B C1B SING N N 13
FDA C3B O3B SING N N 14
FDA C3B C2B SING N N 15
FDA C3B H3B SING N N 16
FDA O3B HO3A SING N N 17
FDA C2B O2B SING N N 18
FDA C2B C1B SING N N 19
FDA C2B H2B SING N N 20
FDA O2B HO2A SING N N 21
FDA C1B N9A SING N N 22
FDA C1B H1B SING N N 23
FDA N9A C8A SING Y N 24
FDA N9A C4A SING Y N 25
FDA C8A N7A DOUB Y N 26
FDA C8A H8A SING N N 27
FDA N7A C5A SING Y N 28
FDA C5A C6A SING Y N 29
FDA C5A C4A DOUB Y N 30
FDA C6A N6A SING N N 31
FDA C6A N1A DOUB Y N 32
FDA N6A H61A SING N N 33
FDA N6A H62A SING N N 34
FDA N1A C2A SING Y N 35
FDA C2A N3A DOUB Y N 36
FDA C2A H2A SING N N 37
FDA N3A C4A SING Y N 38
FDA N1 C2 SING N N 39
FDA N1 C10 SING N N 40
FDA N1 HN1 SING N N 41
FDA C2 O2 DOUB N N 42
FDA C2 N3 SING N N 43
FDA N3 C4 SING N N 44
FDA N3 HN3 SING N N 45
FDA C4 O4 DOUB N N 46
FDA C4 C4X SING N N 47
FDA C4X N5 SING N N 48
FDA C4X C10 DOUB N N 49
FDA N5 C5X SING N N 50
FDA N5 HN5 SING N N 51
FDA C5X C6 DOUB Y N 52
FDA C5X C9A SING Y N 53
FDA C6 C7 SING Y N 54
FDA C6 H6 SING N N 55
FDA C7 C7M SING N N 56
FDA C7 C8 DOUB Y N 57
FDA C7M HM71 SING N N 58
FDA C7M HM72 SING N N 59
FDA C7M HM73 SING N N 60
FDA C8 C8M SING N N 61
FDA C8 C9 SING Y N 62
FDA C8M HM81 SING N N 63
FDA C8M HM82 SING N N 64
FDA C8M HM83 SING N N 65
FDA C9 C9A DOUB Y N 66
FDA C9 H9 SING N N 67
FDA C9A N10 SING N N 68
FDA N10 C10 SING N N 69
FDA N10 "C1'" SING N N 70
FDA "C1'" "C2'" SING N N 71
FDA "C1'" "H1'1" SING N N 72
FDA "C1'" "H1'2" SING N N 73
FDA "C2'" "O2'" SING N N 74
FDA "C2'" "C3'" SING N N 75
FDA "C2'" "H2'" SING N N 76
FDA "O2'" "HO2'" SING N N 77
FDA "C3'" "O3'" SING N N 78
FDA "C3'" "C4'" SING N N 79
FDA "C3'" "H3'" SING N N 80
FDA "O3'" "HO3'" SING N N 81
FDA "C4'" "O4'" SING N N 82
FDA "C4'" "C5'" SING N N 83
FDA "C4'" "H4'" SING N N 84
FDA "O4'" "HO4'" SING N N 85
FDA "C5'" "O5'" SING N N 86
FDA "C5'" "H5'1" SING N N 87
FDA "C5'" "H5'2" SING N N 88
FDA "O5'" P SING N N 89
FDA P O1P DOUB N N 90
FDA P O2P SING N N 91
FDA P O3P SING N N 92
FDA O2P HOP2 SING N N 93
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FDA SMILES ACDLabs 10.04 O=C3C=2Nc1cc(c(cc1N(C=2NC(=O)N3)CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c(ncnc45)N)C(O)C6O)C)C
FDA SMILES_CANONICAL CACTVS 3.341 Cc1cc2NC3=C(NC(=O)NC3=O)N(C[C@H](O)[C@H](O)[C@H](O)CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)c2cc1C
FDA SMILES CACTVS 3.341 Cc1cc2NC3=C(NC(=O)NC3=O)N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)c2cc1C
FDA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1cc2c(cc1C)N(C3=C(N2)C(=O)NC(=O)N3)C[C@@H]([C@@H]([C@@H](CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O
FDA SMILES "OpenEye OEToolkits" 1.5.0 Cc1cc2c(cc1C)N(C3=C(N2)C(=O)NC(=O)N3)CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O
FDA InChI InChI 1.03 InChI=1S/C27H35N9O15P2/c1-10-3-12-13(4-11(10)2)35(24-18(32-12)25(42)34-27(43)33-24)5-14(37)19(39)15(38)6-48-52(44,45)51-53(46,47)49-7-16-20(40)21(41)26(50-16)36-9-31-17-22(28)29-8-30-23(17)36/h3-4,8-9,14-16,19-21,26,32,37-41H,5-7H2,1-2H3,(H,44,45)(H,46,47)(H2,28,29,30)(H2,33,34,42,43)/t14-,15+,16+,19-,20+,21+,26+/m0/s1
FDA InChIKey InChI 1.03 YPZRHBJKEMOYQH-UYBVJOGSSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FDA "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)"
FDA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-1,5-dihydrobenzo[g]pteridin-10-yl)-2,3,4-trihydroxy-pentoxy]-hydroxy-phosphoryl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FDA 'Create component' 1999-07-08 RCSB
FDA 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FDA PA P 12.030 2.024 1
FDA O1A O 12.780 3.323 2
FDA O2A O 11.280 0.725 3
FDA O5B O 10.730 2.774 4
FDA C5B C 10.730 4.274 5
FDA C4B C 9.431 5.024 6
FDA O4B O 9.275 6.516 7
FDA C3B C 8.061 4.414 8
FDA O3B O 7.749 2.946 9
FDA C2B C 7.058 5.528 10
FDA O2B O 5.566 5.372 11
FDA C1B C 7.808 6.827 12
FDA N9A N 7.197 8.198 13
FDA C8A C 7.944 9.488 14
FDA N7A N 6.949 10.599 15
FDA C5A C 5.584 9.998 16
FDA C6A C 4.215 10.611 17
FDA N6A N 4.061 12.103 18
FDA N1A N 3.000 9.731 19
FDA C2A C 3.154 8.239 20
FDA N3A N 4.523 7.627 21
FDA C4A C 5.739 8.507 22
FDA N1 N 19.866 -8.424 23
FDA C2 C 21.225 -9.195 24
FDA O2 O 22.521 -8.440 25
FDA N3 N 21.225 -10.757 26
FDA C4 C 19.866 -11.528 27
FDA O4 O 19.848 -13.028 28
FDA C4X C 18.525 -10.726 29
FDA N5 N 17.226 -11.476 30
FDA C5X C 15.927 -10.726 31
FDA C6 C 14.586 -11.528 32
FDA C7 C 13.227 -10.757 33
FDA C7M C 11.930 -11.512 34
FDA C8 C 13.227 -9.195 35
FDA C8M C 11.930 -8.440 36
FDA C9 C 14.586 -8.424 37
FDA C9A C 15.927 -9.226 38
FDA N10 N 17.226 -8.476 39
FDA C10 C 18.525 -9.226 40
FDA "C1'" C 17.226 -6.976 41
FDA "C2'" C 15.927 -6.226 42
FDA "O2'" O 14.627 -6.976 43
FDA "C3'" C 15.927 -4.726 44
FDA "O3'" O 17.226 -3.976 45
FDA "C4'" C 14.627 -3.976 46
FDA "O4'" O 13.329 -4.726 47
FDA "C5'" C 14.627 -2.476 48
FDA "O5'" O 13.329 -1.726 49
FDA P P 13.329 -0.226 50
FDA O1P O 11.829 -0.226 51
FDA O2P O 14.829 -0.226 52
FDA O3P O 13.329 1.274 53
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FDA PA O1A DOUBLE NONE 1
FDA PA O2A SINGLE BEGINDASH 2
FDA PA O5B SINGLE NONE 3
FDA PA O3P SINGLE NONE 4
FDA O5B C5B SINGLE NONE 5
FDA C4B C5B SINGLE BEGINDASH 6
FDA C4B O4B SINGLE NONE 7
FDA C4B C3B SINGLE NONE 8
FDA O4B C1B SINGLE NONE 9
FDA C3B O3B SINGLE BEGINWEDGE 10
FDA C3B C2B SINGLE NONE 11
FDA C2B O2B SINGLE BEGINWEDGE 12
FDA C2B C1B SINGLE NONE 13
FDA C1B N9A SINGLE BEGINDASH 14
FDA N9A C8A SINGLE NONE 15
FDA N9A C4A SINGLE NONE 16
FDA C8A N7A DOUBLE NONE 17
FDA N7A C5A SINGLE NONE 18
FDA C5A C6A SINGLE NONE 19
FDA C5A C4A DOUBLE NONE 20
FDA C6A N6A SINGLE NONE 21
FDA C6A N1A DOUBLE NONE 22
FDA N1A C2A SINGLE NONE 23
FDA C2A N3A DOUBLE NONE 24
FDA N3A C4A SINGLE NONE 25
FDA N1 C2 SINGLE NONE 26
FDA N1 C10 SINGLE NONE 27
FDA C2 O2 DOUBLE NONE 28
FDA C2 N3 SINGLE NONE 29
FDA N3 C4 SINGLE NONE 30
FDA C4 O4 DOUBLE NONE 31
FDA C4 C4X SINGLE NONE 32
FDA C4X N5 SINGLE NONE 33
FDA C4X C10 DOUBLE NONE 34
FDA N5 C5X SINGLE NONE 35
FDA C5X C6 DOUBLE NONE 36
FDA C5X C9A SINGLE NONE 37
FDA C6 C7 SINGLE NONE 38
FDA C7 C7M SINGLE NONE 39
FDA C7 C8 DOUBLE NONE 40
FDA C8 C8M SINGLE NONE 41
FDA C8 C9 SINGLE NONE 42
FDA C9 C9A DOUBLE NONE 43
FDA C9A N10 SINGLE NONE 44
FDA N10 C10 SINGLE NONE 45
FDA N10 "C1'" SINGLE NONE 46
FDA "C1'" "C2'" SINGLE NONE 47
FDA "C2'" "O2'" SINGLE BEGINDASH 48
FDA "C2'" "C3'" SINGLE NONE 49
FDA "C3'" "O3'" SINGLE BEGINWEDGE 50
FDA "C3'" "C4'" SINGLE NONE 51
FDA "C4'" "O4'" SINGLE BEGINDASH 52
FDA "C4'" "C5'" SINGLE NONE 53
FDA "C5'" "O5'" SINGLE NONE 54
FDA "O5'" P SINGLE NONE 55
FDA P O1P DOUBLE NONE 56
FDA P O2P SINGLE BEGINWEDGE 57
FDA P O3P SINGLE NONE 58
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FDA MurckoScaffold S1 scaffold 'O=c1[nH]c2c(c(=O)[nH]1)Nc1ccccc1N2CCCCCO[PH](=O)O[PH](=O)OC[C@@H]1CC[C@H](n2cnc3cncnc32)O1' InChI=1S/C25H30N8O8P2/c34-24-21-23(30-25(35)31-24)32(19-7-3-2-6-17(19)29-21)10-4-1-5-11-38-42(36)41-43(37)39-13-16-8-9-20(40-16)33-15-28-18-12-26-14-27-22(18)33/h2-3,6-7,12,14-16,20,29,42-43H,1,4-5,8-11,13H2,(H2,30,31,34,35)/t16-,20+/m0/s1 YWXILGKBCQBYLT-OXJNMPFZSA-N
FDA adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
FDA imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
FDA phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
FDA phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
FDA purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
FDA pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
FDA ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FDA PA S1 1
FDA O1A S1 1
FDA O5B S1 1
FDA C5B S1 1
FDA C4B S1 1
FDA O4B S1 1
FDA C3B S1 1
FDA C2B S1 1
FDA C1B S1 1
FDA N9A S1 1
FDA C8A S1 1
FDA N7A S1 1
FDA C5A S1 1
FDA C6A S1 1
FDA N1A S1 1
FDA C2A S1 1
FDA N3A S1 1
FDA C4A S1 1
FDA N1 S1 1
FDA C2 S1 1
FDA O2 S1 1
FDA N3 S1 1
FDA C4 S1 1
FDA O4 S1 1
FDA C4X S1 1
FDA N5 S1 1
FDA C5X S1 1
FDA C6 S1 1
FDA C7 S1 1
FDA C8 S1 1
FDA C9 S1 1
FDA C9A S1 1
FDA N10 S1 1
FDA C10 S1 1
FDA "C1'" S1 1
FDA "C2'" S1 1
FDA "C3'" S1 1
FDA "C4'" S1 1
FDA "C5'" S1 1
FDA "O5'" S1 1
FDA P S1 1
FDA O1P S1 1
FDA O3P S1 1
FDA N1A F1 1
FDA C6A F1 1
FDA C5A F1 1
FDA C4A F1 1
FDA N3A F1 1
FDA C2A F1 1
FDA N9A F1 1
FDA C8A F1 1
FDA N7A F1 1
FDA N6A F1 1
FDA C5A F2 1
FDA C4A F2 1
FDA N9A F2 1
FDA C8A F2 1
FDA N7A F2 1
FDA C5X F3 1
FDA C6 F3 1
FDA C7 F3 1
FDA C8 F3 1
FDA C9 F3 1
FDA C9A F3 1
FDA O2A F4 1
FDA PA F4 1
FDA O1A F4 1
FDA O5B F4 1
FDA O3P F4 1
FDA "O5'" F4 2
FDA P F4 2
FDA O1P F4 2
FDA O2P F4 2
FDA O3P F4 2
FDA N7A F5 1
FDA C8A F5 1
FDA N9A F5 1
FDA C4A F5 1
FDA C5A F5 1
FDA C6A F5 1
FDA N1A F5 1
FDA C2A F5 1
FDA N3A F5 1
FDA C5A F6 1
FDA C6A F6 1
FDA N1A F6 1
FDA C2A F6 1
FDA N3A F6 1
FDA C4A F6 1
FDA C4X F6 2
FDA C4 F6 2
FDA N3 F6 2
FDA C2 F6 2
FDA N1 F6 2
FDA C10 F6 2
FDA C2B F7 1
FDA C3B F7 1
FDA C4B F7 1
FDA O4B F7 1
FDA C1B F7 1
FDA C5B F7 1
FDA O5B F7 1
FDA O3B F7 1
FDA O2B F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FDA
_pdbe_chem_comp_rdkit_properties.exactmw 787.173
_pdbe_chem_comp_rdkit_properties.amw 787.573
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 24
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 12
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 11
_pdbe_chem_comp_rdkit_properties.NumHBA 22
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 53
_pdbe_chem_comp_rdkit_properties.NumAtoms 88
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 26
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.444
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 346.269
_pdbe_chem_comp_rdkit_properties.tpsa 363.280
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.391
_pdbe_chem_comp_rdkit_properties.CrippenMR 173.565
_pdbe_chem_comp_rdkit_properties.chi0v 26.332
_pdbe_chem_comp_rdkit_properties.chi1v 15.876
_pdbe_chem_comp_rdkit_properties.chi2v 8.207
_pdbe_chem_comp_rdkit_properties.chi3v 8.207
_pdbe_chem_comp_rdkit_properties.chi4v 5.470
_pdbe_chem_comp_rdkit_properties.chi0n 59.543
_pdbe_chem_comp_rdkit_properties.chi1n 29.548
_pdbe_chem_comp_rdkit_properties.chi2n 5.977
_pdbe_chem_comp_rdkit_properties.chi3n 5.977
_pdbe_chem_comp_rdkit_properties.chi4n 3.834
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.130
_pdbe_chem_comp_rdkit_properties.kappa1 14.179
_pdbe_chem_comp_rdkit_properties.kappa2 14.600
_pdbe_chem_comp_rdkit_properties.kappa3 7.906
_pdbe_chem_comp_rdkit_properties.Phi 3.906
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FDA UniChem PDBe FDA
FDA UniChem ChEBI 17877
FDA UniChem ZINC ZINC000095099885
FDA UniChem SureChEMBL SCHEMBL4363188
FDA UniChem HMDB HMDB0001197
FDA UniChem 'PubChem TPHARMA' 16031046
FDA UniChem NMRShiftDB 60020456
FDA UniChem MetaboLights MTBLC17877
FDA UniChem BRENDA 256
FDA UniChem BRENDA 44763
FDA UniChem Nikkaji J792.632D
FDA UniChem PubChem 446013
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FDA PA 2.849 -3.563 -1.897 ETKDGv3 1
FDA O1A 1.787 -4.556 -1.479 ETKDGv3 2
FDA O2A 3.203 -3.816 -3.533 ETKDGv3 3
FDA O5B 4.251 -3.808 -0.955 ETKDGv3 4
FDA C5B 5.281 -2.999 -1.472 ETKDGv3 5
FDA C4B 6.534 -3.144 -0.596 ETKDGv3 6
FDA O4B 7.599 -2.436 -1.191 ETKDGv3 7
FDA C3B 6.320 -2.608 0.819 ETKDGv3 8
FDA O3B 7.107 -3.333 1.731 ETKDGv3 9
FDA C2B 6.820 -1.191 0.704 ETKDGv3 10
FDA O2B 7.414 -0.741 1.895 ETKDGv3 11
FDA C1B 7.844 -1.273 -0.426 ETKDGv3 12
FDA N9A 7.771 -0.090 -1.286 ETKDGv3 13
FDA C8A 8.104 -0.037 -2.683 ETKDGv3 14
FDA N7A 8.450 1.146 -3.101 ETKDGv3 15
FDA C5A 8.376 1.959 -1.937 ETKDGv3 16
FDA C6A 8.811 3.349 -1.753 ETKDGv3 17
FDA N6A 9.227 4.151 -2.857 ETKDGv3 18
FDA N1A 8.812 3.836 -0.540 ETKDGv3 19
FDA C2A 8.408 3.030 0.595 ETKDGv3 20
FDA N3A 8.035 1.789 0.427 ETKDGv3 21
FDA C4A 8.012 1.253 -0.902 ETKDGv3 22
FDA N1 -7.228 -1.838 1.508 ETKDGv3 23
FDA C2 -8.393 -2.549 1.930 ETKDGv3 24
FDA O2 -8.361 -3.802 2.061 ETKDGv3 25
FDA N3 -9.592 -1.833 2.196 ETKDGv3 26
FDA C4 -9.605 -0.419 2.020 ETKDGv3 27
FDA O4 -10.670 0.220 2.232 ETKDGv3 28
FDA C4X -8.375 0.293 1.592 ETKDGv3 29
FDA N5 -8.433 1.717 1.421 ETKDGv3 30
FDA C5X -7.320 2.447 0.910 ETKDGv3 31
FDA C6 -7.424 3.760 0.658 ETKDGv3 32
FDA C7 -6.273 4.518 0.116 ETKDGv3 33
FDA C7M -6.439 5.990 -0.159 ETKDGv3 34
FDA C8 -5.113 3.869 -0.134 ETKDGv3 35
FDA C8M -3.908 4.583 -0.691 ETKDGv3 36
FDA C9 -5.008 2.417 0.163 ETKDGv3 37
FDA C9A -6.057 1.727 0.665 ETKDGv3 38
FDA N10 -5.998 0.308 0.987 ETKDGv3 39
FDA C10 -7.224 -0.395 1.366 ETKDGv3 40
FDA "C1'" -4.700 -0.398 1.007 ETKDGv3 41
FDA "C2'" -4.327 -0.926 -0.400 ETKDGv3 42
FDA "O2'" -5.351 -1.760 -0.876 ETKDGv3 43
FDA "C3'" -2.979 -1.698 -0.432 ETKDGv3 44
FDA "O3'" -3.071 -2.893 0.306 ETKDGv3 45
FDA "C4'" -1.753 -0.845 0.007 ETKDGv3 46
FDA "O4'" -1.721 0.383 -0.679 ETKDGv3 47
FDA "C5'" -0.433 -1.604 -0.207 ETKDGv3 48
FDA "O5'" 0.639 -0.795 0.215 ETKDGv3 49
FDA P 2.088 -1.656 -0.040 ETKDGv3 50
FDA O1P 3.241 -0.783 0.396 ETKDGv3 51
FDA O2P 2.073 -3.057 0.918 ETKDGv3 52
FDA O3P 2.250 -1.981 -1.708 ETKDGv3 53
FDA HOA2 3.553 -4.741 -3.576 ETKDGv3 54
FDA H51A 4.981 -1.927 -1.499 ETKDGv3 55
FDA H52A 5.547 -3.327 -2.501 ETKDGv3 56
FDA H4B 6.803 -4.223 -0.559 ETKDGv3 57
FDA H3B 5.252 -2.621 1.139 ETKDGv3 58
FDA HO3A 6.615 -4.173 1.923 ETKDGv3 59
FDA H2B 5.978 -0.519 0.412 ETKDGv3 60
FDA HO2A 6.671 -0.551 2.525 ETKDGv3 61
FDA H1B 8.872 -1.350 -0.007 ETKDGv3 62
FDA H8A 8.090 -0.901 -3.334 ETKDGv3 63
FDA H61A 9.226 3.764 -3.827 ETKDGv3 64
FDA H62A 9.536 5.137 -2.707 ETKDGv3 65
FDA H2A 8.428 3.455 1.589 ETKDGv3 66
FDA HN1 -6.397 -2.417 1.269 ETKDGv3 67
FDA HN3 -10.454 -2.338 2.504 ETKDGv3 68
FDA HN5 -9.321 2.227 1.633 ETKDGv3 69
FDA H6 -8.360 4.271 0.846 ETKDGv3 70
FDA HM71 -7.436 6.351 0.170 ETKDGv3 71
FDA HM72 -6.343 6.185 -1.247 ETKDGv3 72
FDA HM73 -5.669 6.571 0.391 ETKDGv3 73
FDA HM81 -4.167 5.081 -1.649 ETKDGv3 74
FDA HM82 -3.075 3.877 -0.891 ETKDGv3 75
FDA HM83 -3.549 5.342 0.036 ETKDGv3 76
FDA H9 -4.063 1.940 -0.039 ETKDGv3 77
FDA "H1'1" -4.707 -1.212 1.757 ETKDGv3 78
FDA "H1'2" -3.914 0.283 1.389 ETKDGv3 79
FDA "H2'" -4.241 -0.054 -1.085 ETKDGv3 80
FDA "HO2'" -5.245 -1.821 -1.862 ETKDGv3 81
FDA "H3'" -2.809 -1.987 -1.492 ETKDGv3 82
FDA "HO3'" -3.007 -2.667 1.270 ETKDGv3 83
FDA "H4'" -1.832 -0.625 1.093 ETKDGv3 84
FDA "HO4'" -1.651 0.183 -1.649 ETKDGv3 85
FDA "H5'1" -0.466 -2.545 0.389 ETKDGv3 86
FDA "H5'2" -0.337 -1.856 -1.288 ETKDGv3 87
FDA HOP2 1.941 -2.730 1.843 ETKDGv3 88
#