data_FDY
#
_chem_comp.id FDY
_chem_comp.name "5'-O-[(R)-{[(R)-[(R)-fluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]thymidine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H18 F N2 O13 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-03-26
_chem_comp.pdbx_modified_date 2018-06-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 498.186
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FDY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CTK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FDY C2 C1 C 0 1 N N N N N N 7.769 7.940 9.331 -5.193 -0.414 0.863 C2 FDY 1
FDY C4 C2 C 0 1 N N N N N N 9.664 7.561 10.658 -6.610 -2.269 0.768 C4 FDY 2
FDY C5 C3 C 0 1 N N N N N N 8.857 7.032 11.700 -6.450 -2.305 -0.638 C5 FDY 3
FDY C6 C4 C 0 1 N N N N N N 7.458 6.991 11.452 -5.661 -1.385 -1.233 C6 FDY 4
FDY O4 O1 O 0 1 N N N N N N 10.856 7.617 10.804 -7.316 -3.089 1.327 O4 FDY 5
FDY C7 C5 C 0 1 N N N N N N 9.454 6.507 13.036 -7.151 -3.356 -1.460 C7 FDY 6
FDY N3 N1 N 0 1 N N N N N N 9.079 8.015 9.508 -5.974 -1.319 1.482 N3 FDY 7
FDY O2 O2 O 0 1 N N N N N N 7.275 8.335 8.267 -4.621 0.433 1.521 O2 FDY 8
FDY N1 N2 N 0 1 N N N N N N 6.953 7.449 10.288 -5.032 -0.438 -0.472 N1 FDY 9
FDY "C1'" C6 C 0 1 N N R N N N 5.544 7.351 10.033 -4.177 0.561 -1.118 "C1'" FDY 10
FDY "C2'" C7 C 0 1 N N N N N N 5.261 6.126 9.669 -4.734 1.982 -0.879 "C2'" FDY 11
FDY "C3'" C8 C 0 1 N N S N N N 4.625 5.455 10.836 -3.473 2.854 -0.694 "C3'" FDY 12
FDY "O3'" O3 O 0 1 N N N N N N 3.725 4.392 10.575 -3.406 3.859 -1.707 "O3'" FDY 13
FDY "O4'" O4 O 0 1 N N N N N N 4.687 7.614 11.351 -2.868 0.571 -0.507 "O4'" FDY 14
FDY "C4'" C9 C 0 1 N N R N N N 3.903 6.665 11.503 -2.302 1.857 -0.842 "C4'" FDY 15
FDY "C5'" C10 C 0 1 N N N N N N 3.699 6.367 13.012 -1.174 2.212 0.129 "C5'" FDY 16
FDY "O5'" O5 O 0 1 N N N N N N 5.073 6.102 13.517 -0.057 1.352 -0.104 "O5'" FDY 17
FDY PA P1 P 0 1 N N N N N N 5.287 4.909 14.592 1.311 1.444 0.740 PA FDY 18
FDY O1A O6 O 0 1 N N N N N N 4.302 5.008 15.716 1.021 1.059 2.276 O1A FDY 19
FDY O2A O7 O 0 1 N N N N N N 6.689 5.002 15.102 1.843 2.823 0.669 O2A FDY 20
FDY O3A O8 O 0 1 N N N N N N 5.202 3.506 13.828 2.391 0.420 0.125 O3A FDY 21
FDY PB P2 P 0 1 N N N N N N 3.975 2.592 13.631 3.983 0.242 0.287 PB FDY 22
FDY O2B O9 O 0 1 N N N N N N 3.856 2.264 12.135 4.308 -0.017 1.707 O2B FDY 23
FDY O1B O10 O 0 1 N N N N N N 2.693 3.214 14.139 4.724 1.587 -0.197 O1B FDY 24
FDY C3B C11 C 0 1 N N R N N N 4.369 1.004 14.572 4.544 -1.161 -0.732 C3B FDY 25
FDY F2B F1 F 0 1 N N N N N N 4.040 -0.033 13.801 3.900 -2.330 -0.312 F2B FDY 26
FDY PG P3 P 0 1 N N N N N N 3.499 0.993 16.140 6.347 -1.362 -0.549 PG FDY 27
FDY O3G O11 O 0 1 N N N N N N 2.024 0.707 15.888 7.029 -0.126 -0.993 O3G FDY 28
FDY O2G O12 O 0 1 N N N N N N 4.082 -0.013 17.042 6.701 -1.644 0.996 O2G FDY 29
FDY O1G O13 O 0 1 N N N N N N 3.618 2.374 16.749 6.843 -2.602 -1.448 O1G FDY 30
FDY H1 H1 H 0 1 N N N N N N 6.793 6.589 12.202 -5.527 -1.397 -2.305 H1 FDY 31
FDY H2 H2 H 0 1 N N N N N N 8.642 6.148 13.685 -7.736 -4.001 -0.804 H2 FDY 32
FDY H3 H3 H 0 1 N N N N N N 10.149 5.680 12.827 -7.813 -2.873 -2.179 H3 FDY 33
FDY H4 H4 H 0 1 N N N N N N 9.994 7.321 13.541 -6.411 -3.954 -1.992 H4 FDY 34
FDY H5 H5 H 0 1 N N N N N N 9.650 8.410 8.789 -6.078 -1.288 2.446 H5 FDY 35
FDY H6 H6 H 0 1 N N N N N N 5.243 8.090 9.276 -4.096 0.357 -2.185 H6 FDY 36
FDY H7 H7 H 0 1 N N N N N N 4.566 6.137 8.816 -5.307 2.317 -1.744 H7 FDY 37
FDY H8 H8 H 0 1 N N N N N N 6.182 5.595 9.385 -5.350 2.005 0.020 H8 FDY 38
FDY H9 H9 H 0 1 N N N N N N 5.415 5.113 11.521 -3.464 3.308 0.297 H9 FDY 39
FDY H10 H10 H 0 1 N N N N N N 3.872 3.692 11.200 -4.149 4.477 -1.698 H10 FDY 40
FDY H11 H11 H 0 1 N N N N N N 2.922 6.807 11.026 -1.934 1.854 -1.868 H11 FDY 41
FDY H12 H12 H 0 1 N N N N N N 3.254 7.233 13.525 -0.873 3.248 -0.026 H12 FDY 42
FDY H13 H13 H 0 1 N N N N N N 3.054 5.487 13.153 -1.523 2.084 1.153 H13 FDY 43
FDY H14 H14 H 0 1 N N N N N N 4.768 5.111 16.538 0.670 0.166 2.398 H14 FDY 44
FDY H15 H15 H 0 1 N N N N N N 2.067 3.278 13.427 4.556 1.819 -1.121 H15 FDY 45
FDY H16 H16 H 0 1 N N N N N N 5.444 1.046 14.802 4.305 -0.970 -1.778 H16 FDY 46
FDY H17 H17 H 0 1 N N N N N N 3.415 -0.643 17.287 6.288 -2.441 1.355 H17 FDY 47
FDY H18 H18 H 0 1 N N N N N N 2.753 2.756 16.840 7.795 -2.767 -1.399 H18 FDY 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FDY O2 C2 DOUB N N 1
FDY C2 N3 SING N N 2
FDY C2 N1 SING N N 3
FDY N3 C4 SING N N 4
FDY "C2'" "C1'" SING N N 5
FDY "C2'" "C3'" SING N N 6
FDY "C1'" N1 SING N N 7
FDY "C1'" "O4'" SING N N 8
FDY N1 C6 SING N N 9
FDY "O3'" "C3'" SING N N 10
FDY C4 O4 DOUB N N 11
FDY C4 C5 SING N N 12
FDY "C3'" "C4'" SING N N 13
FDY "O4'" "C4'" SING N N 14
FDY C6 C5 DOUB N N 15
FDY "C4'" "C5'" SING N N 16
FDY C5 C7 SING N N 17
FDY O2B PB DOUB N N 18
FDY "C5'" "O5'" SING N N 19
FDY "O5'" PA SING N N 20
FDY PB O3A SING N N 21
FDY PB O1B SING N N 22
FDY PB C3B SING N N 23
FDY F2B C3B SING N N 24
FDY O3A PA SING N N 25
FDY C3B PG SING N N 26
FDY PA O2A DOUB N N 27
FDY PA O1A SING N N 28
FDY O3G PG DOUB N N 29
FDY PG O1G SING N N 30
FDY PG O2G SING N N 31
FDY C6 H1 SING N N 32
FDY C7 H2 SING N N 33
FDY C7 H3 SING N N 34
FDY C7 H4 SING N N 35
FDY N3 H5 SING N N 36
FDY "C1'" H6 SING N N 37
FDY "C2'" H7 SING N N 38
FDY "C2'" H8 SING N N 39
FDY "C3'" H9 SING N N 40
FDY "O3'" H10 SING N N 41
FDY "C4'" H11 SING N N 42
FDY "C5'" H12 SING N N 43
FDY "C5'" H13 SING N N 44
FDY O1A H14 SING N N 45
FDY O1B H15 SING N N 46
FDY C3B H16 SING N N 47
FDY O2G H17 SING N N 48
FDY O1G H18 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FDY SMILES ACDLabs 12.01 C1(NC(=O)C(C)=CN1C2OC(C(C2)O)COP(=O)(O)OP(O)(C(P(O)(O)=O)F)=O)=O
FDY InChI InChI 1.03 InChI=1S/C11H18FN2O13P3/c1-5-3-14(11(17)13-9(5)16)8-2-6(15)7(26-8)4-25-30(23,24)27-29(21,22)10(12)28(18,19)20/h3,6-8,10,15H,2,4H2,1H3,(H,21,22)(H,23,24)(H,13,16,17)(H2,18,19,20)/t6-,7+,8+,10+/m0/s1
FDY InChIKey InChI 1.03 XUHVKXPQGWCRQM-OKJYPTKPSA-N
FDY SMILES_CANONICAL CACTVS 3.385 CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@H](F)[P](O)(O)=O)O2)C(=O)NC1=O
FDY SMILES CACTVS 3.385 CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[CH](F)[P](O)(O)=O)O2)C(=O)NC1=O
FDY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)OP(=O)([C@H](F)P(=O)(O)O)O)O
FDY SMILES "OpenEye OEToolkits" 2.0.6 CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(C(F)P(=O)(O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FDY "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-{[(R)-[(R)-fluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]thymidine"
FDY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(~{R})-fluoranyl-[[[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methyl]phosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FDY 'Create component' 2018-03-26 RCSB
FDY 'Initial release' 2018-06-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FDY C2 C 6.897 3.203 1
FDY C4 C 5.598 5.453 2
FDY C5 C 4.299 4.703 3
FDY C6 C 4.299 3.203 4
FDY O4 O 5.598 6.953 5
FDY C7 C 3.000 5.453 6
FDY N3 N 6.897 4.703 7
FDY O2 O 8.196 2.453 8
FDY N1 N 5.598 2.453 9
FDY "C1'" C 5.598 0.953 10
FDY "C2'" C 4.385 0.071 11
FDY "C3'" C 4.848 -1.356 12
FDY "O3'" O 3.966 -2.569 13
FDY "O4'" O 6.812 0.071 14
FDY "C4'" C 6.348 -1.356 15
FDY "C5'" C 7.230 -2.569 16
FDY "O5'" O 8.722 -2.412 17
FDY PA P 9.603 -3.626 18
FDY O1A O 8.390 -4.508 19
FDY O2A O 10.817 -2.744 20
FDY O3A O 10.485 -4.839 21
FDY PB P 11.977 -4.683 22
FDY O2B O 12.133 -6.174 23
FDY O1B O 11.820 -3.191 24
FDY C3B C 13.469 -4.526 25
FDY F2B F 14.079 -3.155 26
FDY PG P 14.350 -5.739 27
FDY O3G O 15.232 -6.953 28
FDY O2G O 13.136 -6.621 29
FDY O1G O 15.564 -4.858 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FDY O2 C2 DOUBLE NONE 1
FDY C2 N3 SINGLE NONE 2
FDY C2 N1 SINGLE NONE 3
FDY N3 C4 SINGLE NONE 4
FDY "C2'" "C1'" SINGLE NONE 5
FDY "C2'" "C3'" SINGLE NONE 6
FDY "C1'" N1 SINGLE BEGINDASH 7
FDY "C1'" "O4'" SINGLE NONE 8
FDY N1 C6 SINGLE NONE 9
FDY "C3'" "O3'" SINGLE BEGINWEDGE 10
FDY C4 O4 DOUBLE NONE 11
FDY C4 C5 SINGLE NONE 12
FDY "C3'" "C4'" SINGLE NONE 13
FDY "O4'" "C4'" SINGLE NONE 14
FDY C6 C5 DOUBLE NONE 15
FDY "C4'" "C5'" SINGLE BEGINDASH 16
FDY C5 C7 SINGLE NONE 17
FDY O2B PB DOUBLE NONE 18
FDY "C5'" "O5'" SINGLE NONE 19
FDY "O5'" PA SINGLE NONE 20
FDY PB O3A SINGLE NONE 21
FDY PB O1B SINGLE BEGINWEDGE 22
FDY PB C3B SINGLE NONE 23
FDY C3B F2B SINGLE BEGINDASH 24
FDY O3A PA SINGLE NONE 25
FDY C3B PG SINGLE NONE 26
FDY PA O2A DOUBLE NONE 27
FDY PA O1A SINGLE BEGINWEDGE 28
FDY O3G PG DOUBLE NONE 29
FDY PG O1G SINGLE NONE 30
FDY PG O2G SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FDY MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
FDY deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
FDY phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
FDY pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FDY C2 S1 1
FDY C4 S1 1
FDY C5 S1 1
FDY C6 S1 1
FDY O4 S1 1
FDY N3 S1 1
FDY O2 S1 1
FDY N1 S1 1
FDY "C1'" S1 1
FDY "C2'" S1 1
FDY "C3'" S1 1
FDY "O4'" S1 1
FDY "C4'" S1 1
FDY "C1'" F1 1
FDY "C2'" F1 1
FDY "C3'" F1 1
FDY "O3'" F1 1
FDY "C4'" F1 1
FDY "O4'" F1 1
FDY "C5'" F1 1
FDY "O5'" F1 1
FDY "O5'" F2 1
FDY PA F2 1
FDY O2A F2 1
FDY O3A F2 1
FDY O1A F2 1
FDY C5 F3 1
FDY C4 F3 1
FDY N3 F3 1
FDY C2 F3 1
FDY N1 F3 1
FDY C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FDY
_pdbe_chem_comp_rdkit_properties.exactmw 498.001
_pdbe_chem_comp_rdkit_properties.amw 498.186
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.636
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 191.686
_pdbe_chem_comp_rdkit_properties.tpsa 234.910
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.988
_pdbe_chem_comp_rdkit_properties.CrippenMR 94.171
_pdbe_chem_comp_rdkit_properties.chi0v 16.105
_pdbe_chem_comp_rdkit_properties.chi1v 11.101
_pdbe_chem_comp_rdkit_properties.chi2v 6.913
_pdbe_chem_comp_rdkit_properties.chi3v 6.913
_pdbe_chem_comp_rdkit_properties.chi4v 4.638
_pdbe_chem_comp_rdkit_properties.chi0n 31.421
_pdbe_chem_comp_rdkit_properties.chi1n 15.043
_pdbe_chem_comp_rdkit_properties.chi2n 2.564
_pdbe_chem_comp_rdkit_properties.chi3n 2.564
_pdbe_chem_comp_rdkit_properties.chi4n 1.458
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.020
_pdbe_chem_comp_rdkit_properties.kappa1 9.855
_pdbe_chem_comp_rdkit_properties.kappa2 8.847
_pdbe_chem_comp_rdkit_properties.kappa3 6.024
_pdbe_chem_comp_rdkit_properties.Phi 2.906
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FDY UniChem PDBe FDY
FDY UniChem PubChem 134163693
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FDY C2 -5.437 -0.915 -2.005 ETKDGv3 1
FDY C4 -5.737 1.512 -2.321 ETKDGv3 2
FDY C5 -4.477 1.752 -1.587 ETKDGv3 3
FDY C6 -3.768 0.710 -1.123 ETKDGv3 4
FDY O4 -6.402 2.477 -2.784 ETKDGv3 5
FDY C7 -3.946 3.152 -1.438 ETKDGv3 6
FDY N3 -6.201 0.176 -2.516 ETKDGv3 7
FDY O2 -5.827 -2.097 -2.208 ETKDGv3 8
FDY N1 -4.227 -0.652 -1.268 ETKDGv3 9
FDY "C1'" -3.395 -1.764 -0.778 ETKDGv3 10
FDY "C2'" -2.329 -2.127 -1.797 ETKDGv3 11
FDY "C3'" -1.194 -2.611 -0.937 ETKDGv3 12
FDY "O3'" -1.205 -4.015 -0.815 ETKDGv3 13
FDY "O4'" -2.769 -1.418 0.439 ETKDGv3 14
FDY "C4'" -1.451 -1.927 0.416 ETKDGv3 15
FDY "C5'" -0.470 -0.777 0.671 ETKDGv3 16
FDY "O5'" 0.833 -1.294 0.814 ETKDGv3 17
FDY PA 1.915 0.010 1.010 ETKDGv3 18
FDY O1A 1.418 0.969 2.316 ETKDGv3 19
FDY O2A 1.928 0.841 -0.255 ETKDGv3 20
FDY O3A 3.465 -0.635 1.291 ETKDGv3 21
FDY PB 4.501 0.651 1.711 ETKDGv3 22
FDY O2B 4.132 1.189 3.075 ETKDGv3 23
FDY O1B 4.416 1.896 0.565 ETKDGv3 24
FDY C3B 6.201 0.003 1.767 ETKDGv3 25
FDY F2B 6.257 -1.056 2.653 ETKDGv3 26
FDY PG 7.375 1.292 2.293 ETKDGv3 27
FDY O3G 7.035 1.762 3.691 ETKDGv3 28
FDY O2G 7.321 2.601 1.221 ETKDGv3 29
FDY O1G 8.940 0.649 2.288 ETKDGv3 30
FDY H1 -2.823 0.897 -0.627 ETKDGv3 31
FDY H2 -3.407 3.442 -2.364 ETKDGv3 32
FDY H3 -4.779 3.865 -1.265 ETKDGv3 33
FDY H4 -3.250 3.231 -0.575 ETKDGv3 34
FDY H5 -7.086 -0.002 -3.042 ETKDGv3 35
FDY H6 -4.029 -2.657 -0.581 ETKDGv3 36
FDY H7 -2.006 -1.227 -2.365 ETKDGv3 37
FDY H8 -2.687 -2.904 -2.509 ETKDGv3 38
FDY H9 -0.222 -2.311 -1.388 ETKDGv3 39
FDY H10 -2.076 -4.286 -0.422 ETKDGv3 40
FDY H11 -1.343 -2.661 1.246 ETKDGv3 41
FDY H12 -0.532 -0.062 -0.182 ETKDGv3 42
FDY H13 -0.783 -0.260 1.606 ETKDGv3 43
FDY H14 1.373 0.345 3.083 ETKDGv3 44
FDY H15 4.743 1.488 -0.276 ETKDGv3 45
FDY H16 6.485 -0.355 0.756 ETKDGv3 46
FDY H17 6.603 3.190 1.566 ETKDGv3 47
FDY H18 8.915 -0.087 2.950 ETKDGv3 48
#