data_FHH
#
_chem_comp.id FHH
_chem_comp.name 'methyl 4-[(2-oxidanylidene-1,5,6,7-tetrahydrocyclopenta[b]pyridin-3-yl)carbonylamino]butanoate'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C14 H18 N2 O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-07-06
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 278.304
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FHH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6GZY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FHH C C1 C 0 1 N N N N N N 144.101 116.975 40.747 -0.548 1.141 -0.085 C FHH 1
FHH O O1 O 0 1 N N N N N N 144.676 118.048 40.570 -0.514 2.356 -0.146 O FHH 2
FHH C1 C2 C 0 1 N N N N N N 143.169 117.035 38.459 1.888 1.131 -0.023 C1 FHH 3
FHH C10 C3 C 0 1 N N N N N N 144.650 114.930 44.455 -4.256 -0.890 0.074 C10 FHH 4
FHH C11 C4 C 0 1 N N N N N N 146.724 115.947 45.025 -5.658 0.999 0.233 C11 FHH 5
FHH C12 C5 C 0 1 N N N N N N 143.265 115.272 42.511 -1.903 -0.973 -0.074 C12 FHH 6
FHH C13 C6 C 0 1 N N N N N N 146.321 114.959 46.125 -6.562 -0.176 -0.194 C13 FHH 7
FHH C14 C7 C 0 1 N N N N N N 144.981 114.293 45.767 -5.683 -1.398 0.145 C14 FHH 8
FHH C2 C8 C 0 1 N N N N N N 142.268 118.292 38.409 3.022 0.105 -0.022 C2 FHH 9
FHH C3 C9 C 0 1 N N N N N N 141.482 118.570 39.682 4.367 0.831 0.032 C3 FHH 10
FHH C4 C10 C 0 1 N N N N N N 141.922 119.801 40.427 5.485 -0.180 0.033 C4 FHH 11
FHH C6 C11 C 0 1 N N N N N N 143.819 120.601 41.631 7.786 -0.798 0.076 C6 FHH 12
FHH C7 C12 C 0 1 N N N N N N 144.258 116.243 42.066 -1.842 0.444 -0.030 C7 FHH 13
FHH C8 C13 C 0 1 N N N N N N 145.380 116.494 42.817 -3.031 1.159 0.074 C8 FHH 14
FHH C9 C14 C 0 1 N N N N N N 145.596 115.832 44.045 -4.244 0.467 0.124 C9 FHH 15
FHH N11 N1 N 0 1 N N N N N N 143.527 114.655 43.727 -3.095 -1.591 -0.021 N11 FHH 16
FHH NA N2 N 0 1 N N N N N N 143.355 116.425 39.786 0.600 0.435 -0.075 NA FHH 17
FHH O13 O2 O 0 1 N N N N N N 142.233 114.988 41.887 -0.877 -1.627 -0.159 O13 FHH 18
FHH O2 O3 O 0 1 N N N N N N 141.127 120.521 41.056 5.232 -1.360 -0.005 O2 FHH 19
FHH O4 O4 O 0 1 N N N N N N 143.250 120.111 40.392 6.762 0.232 0.077 O4 FHH 20
FHH H1 H1 H 0 1 N N N N N N 142.724 116.276 37.799 1.940 1.731 0.885 H1 FHH 21
FHH H2 H2 H 0 1 N N N N N N 144.161 117.317 38.076 1.985 1.780 -0.894 H2 FHH 22
FHH H3 H3 H 0 1 N N N N N N 147.680 115.658 44.564 -5.796 1.847 -0.438 H3 FHH 23
FHH H4 H4 H 0 1 N N N N N N 146.802 116.970 45.421 -5.877 1.291 1.260 H4 FHH 24
FHH H5 H5 H 0 1 N N N N N N 147.098 114.186 46.223 -7.485 -0.188 0.386 H5 FHH 25
FHH H6 H6 H 0 1 N N N N N N 144.212 114.513 46.522 -5.839 -2.191 -0.586 H6 FHH 26
FHH H7 H7 H 0 1 N N N N N N 142.908 119.163 38.206 2.924 -0.544 0.849 H7 FHH 27
FHH H8 H8 H 0 1 N N N N N N 141.550 118.165 37.585 2.970 -0.496 -0.930 H8 FHH 28
FHH H9 H9 H 0 1 N N N N N N 140.422 118.691 39.413 4.465 1.480 -0.838 H9 FHH 29
FHH H10 H10 H 0 1 N N N N N N 141.594 117.704 40.351 4.420 1.432 0.940 H10 FHH 30
FHH H11 H11 H 0 1 N N N N N N 144.888 120.817 41.484 7.701 -1.393 -0.833 H11 FHH 31
FHH H12 H12 H 0 1 N N N N N N 143.298 121.521 41.935 8.771 -0.331 0.113 H12 FHH 32
FHH H13 H13 H 0 1 N N N N N N 143.703 119.838 42.415 7.656 -1.441 0.945 H13 FHH 33
FHH H15 H15 H 0 1 N N N N N N 146.108 117.209 42.463 -3.016 2.239 0.115 H15 FHH 34
FHH H16 H16 H 0 1 N N N N N N 142.900 115.555 39.977 0.573 -0.534 -0.102 H16 FHH 35
FHH H17 H17 H 0 1 N N N N N N 146.217 115.498 47.079 -6.777 -0.134 -1.262 H17 FHH 36
FHH H18 H18 H 0 1 N N N N N N 145.092 113.203 45.664 -5.906 -1.759 1.149 H18 FHH 37
FHH H14 H14 H 0 1 N N N N N N 142.872 113.987 44.082 -3.128 -2.560 -0.051 H14 FHH 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FHH C2 C1 SING N N 1
FHH C2 C3 SING N N 2
FHH C1 NA SING N N 3
FHH C3 C4 SING N N 4
FHH NA C SING N N 5
FHH O4 C4 SING N N 6
FHH O4 C6 SING N N 7
FHH C4 O2 DOUB N N 8
FHH O C DOUB N N 9
FHH C C7 SING N N 10
FHH O13 C12 DOUB N N 11
FHH C7 C12 SING N N 12
FHH C7 C8 DOUB N N 13
FHH C12 N11 SING N N 14
FHH C8 C9 SING N N 15
FHH N11 C10 SING N N 16
FHH C9 C10 DOUB N N 17
FHH C9 C11 SING N N 18
FHH C10 C14 SING N N 19
FHH C11 C13 SING N N 20
FHH C14 C13 SING N N 21
FHH C1 H1 SING N N 22
FHH C1 H2 SING N N 23
FHH C11 H3 SING N N 24
FHH C11 H4 SING N N 25
FHH C13 H5 SING N N 26
FHH C14 H6 SING N N 27
FHH C2 H7 SING N N 28
FHH C2 H8 SING N N 29
FHH C3 H9 SING N N 30
FHH C3 H10 SING N N 31
FHH C6 H11 SING N N 32
FHH C6 H12 SING N N 33
FHH C6 H13 SING N N 34
FHH C8 H15 SING N N 35
FHH NA H16 SING N N 36
FHH C13 H17 SING N N 37
FHH C14 H18 SING N N 38
FHH N11 H14 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FHH InChI InChI 1.03 'InChI=1S/C14H18N2O4/c1-20-12(17)6-3-7-15-13(18)10-8-9-4-2-5-11(9)16-14(10)19/h8H,2-7H2,1H3,(H,15,18)(H,16,19)'
FHH InChIKey InChI 1.03 LFOKUSURFOQCKJ-UHFFFAOYSA-N
FHH SMILES_CANONICAL CACTVS 3.385 'COC(=O)CCCNC(=O)C1=CC2=C(CCC2)NC1=O'
FHH SMILES CACTVS 3.385 'COC(=O)CCCNC(=O)C1=CC2=C(CCC2)NC1=O'
FHH SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.6 'COC(=O)CCCNC(=O)C1=CC2=C(CCC2)NC1=O'
FHH SMILES 'OpenEye OEToolkits' 2.0.6 'COC(=O)CCCNC(=O)C1=CC2=C(CCC2)NC1=O'
#
_pdbx_chem_comp_identifier.comp_id FHH
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
'methyl 4-[(2-oxidanylidene-1,5,6,7-tetrahydrocyclopenta[b]pyridin-3-yl)carbonylamino]butanoate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FHH 'Create component' 2018-07-06 EBI
FHH 'Other modification' 2018-07-11 EBI
FHH 'Initial release' 2019-01-30 RCSB
FHH 'Other modification' 2019-09-04 EBI
FHH 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id FHH
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C2
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FHH C C 6.897 -2.160 1
FHH O O 5.598 -2.910 2
FHH C1 C 5.598 0.090 3
FHH C10 C 10.794 -4.410 4
FHH C11 C 12.214 -2.453 5
FHH C12 C 8.196 -4.410 6
FHH C13 C 13.089 -3.660 7
FHH C14 C 12.214 -4.867 8
FHH C2 C 5.598 1.590 9
FHH C3 C 4.299 2.340 10
FHH C4 C 4.299 3.840 11
FHH C6 C 3.000 6.090 12
FHH C7 C 8.196 -2.910 13
FHH C8 C 9.495 -2.160 14
FHH C9 C 10.794 -2.910 15
FHH N11 N 9.495 -5.160 16
FHH NA N 6.897 -0.660 17
FHH O13 O 6.897 -5.160 18
FHH O2 O 5.598 4.590 19
FHH O4 O 3.000 4.590 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FHH C2 C1 SINGLE NONE 1
FHH C2 C3 SINGLE NONE 2
FHH C1 NA SINGLE NONE 3
FHH C3 C4 SINGLE NONE 4
FHH NA C SINGLE NONE 5
FHH O4 C4 SINGLE NONE 6
FHH O4 C6 SINGLE NONE 7
FHH C4 O2 DOUBLE NONE 8
FHH O C DOUBLE NONE 9
FHH C C7 SINGLE NONE 10
FHH O13 C12 DOUBLE NONE 11
FHH C7 C12 SINGLE NONE 12
FHH C7 C8 DOUBLE NONE 13
FHH C12 N11 SINGLE NONE 14
FHH C8 C9 SINGLE NONE 15
FHH N11 C10 SINGLE NONE 16
FHH C9 C10 DOUBLE NONE 17
FHH C9 C11 SINGLE NONE 18
FHH C10 C14 SINGLE NONE 19
FHH C11 C13 SINGLE NONE 20
FHH C14 C13 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FHH MurckoScaffold S1 scaffold 'O=c1ccc2c([nH]1)CCC2' InChI=1S/C8H9NO/c10-8-5-4-6-2-1-3-7(6)9-8/h4-5H,1-3H2,(H,9,10) GXXRRIYKTZNCNC-UHFFFAOYSA-N
FHH amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
FHH pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FHH C10 S1 1
FHH C11 S1 1
FHH C12 S1 1
FHH C13 S1 1
FHH C14 S1 1
FHH C7 S1 1
FHH C8 S1 1
FHH C9 S1 1
FHH N11 S1 1
FHH O13 S1 1
FHH NA F1 1
FHH C F1 1
FHH O F1 1
FHH C7 F1 1
FHH C10 F2 1
FHH C9 F2 1
FHH C8 F2 1
FHH C7 F2 1
FHH C12 F2 1
FHH N11 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FHH
_pdbe_chem_comp_rdkit_properties.exactmw 278.127
_pdbe_chem_comp_rdkit_properties.amw 278.308
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 141.483
_pdbe_chem_comp_rdkit_properties.tpsa 88.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.282
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.981
_pdbe_chem_comp_rdkit_properties.chi0v 9.527
_pdbe_chem_comp_rdkit_properties.chi1v 4.915
_pdbe_chem_comp_rdkit_properties.chi2v 1.967
_pdbe_chem_comp_rdkit_properties.chi3v 1.967
_pdbe_chem_comp_rdkit_properties.chi4v 1.169
_pdbe_chem_comp_rdkit_properties.chi0n 27.527
_pdbe_chem_comp_rdkit_properties.chi1n 13.809
_pdbe_chem_comp_rdkit_properties.chi2n 1.967
_pdbe_chem_comp_rdkit_properties.chi3n 1.967
_pdbe_chem_comp_rdkit_properties.chi4n 1.169
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.110
_pdbe_chem_comp_rdkit_properties.kappa1 3.750
_pdbe_chem_comp_rdkit_properties.kappa2 6.362
_pdbe_chem_comp_rdkit_properties.kappa3 3.257
_pdbe_chem_comp_rdkit_properties.Phi 1.193
#
_pdbe_chem_comp_external_mappings.comp_id FHH
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 137349349
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FHH C -0.118 0.341 0.608 ETKDGv3 1
FHH O -0.666 0.306 1.744 ETKDGv3 2
FHH C1 -2.356 0.788 -0.473 ETKDGv3 3
FHH C10 4.137 -0.419 0.314 ETKDGv3 4
FHH C11 4.643 0.499 2.391 ETKDGv3 5
FHH C12 1.901 -0.627 -0.704 ETKDGv3 6
FHH C13 5.962 0.020 1.762 ETKDGv3 7
FHH C14 5.605 -0.582 0.393 ETKDGv3 8
FHH C2 -2.946 1.158 -1.841 ETKDGv3 9
FHH C3 -4.469 1.342 -1.787 ETKDGv3 10
FHH C4 -5.174 0.046 -1.531 ETKDGv3 11
FHH C6 -6.232 -1.493 0.091 ETKDGv3 12
FHH C7 1.333 0.062 0.491 ETKDGv3 13
FHH C8 2.169 0.412 1.490 ETKDGv3 14
FHH C9 3.618 0.155 1.378 ETKDGv3 15
FHH N11 3.319 -0.834 -0.784 ETKDGv3 16
FHH NA -0.899 0.676 -0.548 ETKDGv3 17
FHH O13 1.155 -1.064 -1.621 ETKDGv3 18
FHH O2 -5.357 -0.766 -2.478 ETKDGv3 19
FHH O4 -5.591 -0.266 -0.233 ETKDGv3 20
FHH H1 -2.774 -0.185 -0.136 ETKDGv3 21
FHH H2 -2.624 1.569 0.270 ETKDGv3 22
FHH H3 4.658 1.597 2.562 ETKDGv3 23
FHH H4 4.436 -0.037 3.343 ETKDGv3 24
FHH H5 6.664 0.873 1.638 ETKDGv3 25
FHH H6 6.097 -0.022 -0.431 ETKDGv3 26
FHH H7 -2.688 0.374 -2.587 ETKDGv3 27
FHH H8 -2.491 2.114 -2.180 ETKDGv3 28
FHH H9 -4.817 1.753 -2.759 ETKDGv3 29
FHH H10 -4.736 2.078 -0.999 ETKDGv3 30
FHH H11 -6.466 -1.508 1.175 ETKDGv3 31
FHH H12 -5.561 -2.346 -0.144 ETKDGv3 32
FHH H13 -7.178 -1.591 -0.483 ETKDGv3 33
FHH H15 1.795 0.907 2.379 ETKDGv3 34
FHH H16 -0.411 0.885 -1.448 ETKDGv3 35
FHH H17 6.441 -0.749 2.408 ETKDGv3 36
FHH H18 5.874 -1.659 0.345 ETKDGv3 37
FHH H14 3.745 -1.303 -1.614 ETKDGv3 38
#