data_FIO
#
_chem_comp.id FIO
_chem_comp.name N~5~-[(1E)-2-fluoroethanimidoyl]-L-ornithine
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C7 H14 F N3 O2"
_chem_comp.mon_nstd_parent_comp_id ARG
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-02-17
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 191.203
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FIO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4DKT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FIO N N10 N 0 1 N N N Y Y N 0.852 2.207 1.365 2.879 1.788 -0.263 N10 FIO 1
FIO CA C11 C 0 1 N N S Y N N 1.376 3.490 1.589 2.822 0.470 0.383 C11 FIO 2
FIO C C12 C 0 1 N N N Y N Y 2.512 3.727 0.705 4.062 -0.314 0.039 C12 FIO 3
FIO O O14 O 0 1 N N N Y N Y 3.516 3.032 0.770 4.722 -0.007 -0.926 O14 FIO 4
FIO C15 C15 C 0 1 N N N N N N 1.786 3.653 3.083 1.587 -0.287 -0.111 C15 FIO 5
FIO C16 C16 C 0 1 N N N N N N 0.584 3.626 4.069 0.323 0.444 0.347 C16 FIO 6
FIO C17 C17 C 0 1 N N N N N N 1.025 3.861 5.533 -0.911 -0.312 -0.147 C17 FIO 7
FIO N18 N18 N 0 1 N N N N N N -0.150 3.868 6.436 -2.121 0.388 0.292 N18 FIO 8
FIO C19 C19 C 0 1 N N N N N N 0.168 4.173 7.746 -3.356 -0.107 -0.035 C19 FIO 9
FIO C20 C20 C 0 1 N N N N N N 0.608 3.147 8.667 -4.600 0.613 0.416 C20 FIO 10
FIO N21 N21 N 0 1 N N N N N N 0.063 5.387 8.137 -3.454 -1.193 -0.730 N21 FIO 11
FIO F1 F1 F 0 1 N Y N N N N 1.969 2.989 8.581 -5.729 -0.079 -0.035 F1 FIO 12
FIO H HN10 H 0 0 N N N Y Y N 0.074 2.053 1.975 3.650 2.332 0.094 HN10 FIO 13
FIO HA H11 H 0 1 N N N Y N N 0.602 4.242 1.376 2.761 0.598 1.464 H11 FIO 14
FIO H15 H15 H 0 1 N N N N N N 2.470 2.833 3.347 1.603 -0.338 -1.199 H15 FIO 15
FIO H15A H15A H 0 0 N N N N N N 2.307 4.615 3.197 1.591 -1.297 0.300 H15A FIO 16
FIO H16 H16 H 0 1 N N N N N N -0.127 4.414 3.782 0.307 0.495 1.436 H16 FIO 17
FIO H16A H16A H 0 0 N N N N N N 0.091 2.645 4.000 0.319 1.454 -0.063 H16A FIO 18
FIO H17 H17 H 0 1 N N N N N N 1.711 3.057 5.838 -0.895 -0.363 -1.235 H17 FIO 19
FIO H17A H17A H 0 0 N N N N N N 1.542 4.830 5.604 -0.907 -1.322 0.264 H17A FIO 20
FIO HN18 HN18 H 0 0 N N N N N N -1.081 3.671 6.128 -2.048 1.202 0.814 HN18 FIO 21
FIO H20 H20 H 0 1 N N N N N N 0.340 3.439 9.693 -4.616 0.663 1.505 H20 FIO 22
FIO H20A H20A H 0 0 N N N N N N 0.115 2.196 8.416 -4.605 1.623 0.006 H20A FIO 23
FIO HN21 HN21 H 0 0 N N N N N N 0.314 5.494 9.099 -4.328 -1.544 -0.962 HN21 FIO 24
FIO H2 H2 H 0 1 N Y N Y Y N 0.550 2.131 0.415 2.936 1.696 -1.266 H2 FIO 25
FIO OXT OXT O 0 1 N Y N Y N Y ? ? ? 4.434 -1.352 0.804 OXT FIO 26
FIO HXT HXT H 0 1 N Y N Y N Y ? ? ? 5.236 -1.824 0.543 HXT FIO 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FIO N CA SING N N 1
FIO N H SING N N 2
FIO CA C SING N N 3
FIO CA HA SING N N 4
FIO C O DOUB N N 5
FIO C15 CA SING N N 6
FIO C15 C16 SING N N 7
FIO C15 H15 SING N N 8
FIO C15 H15A SING N N 9
FIO C16 C17 SING N N 10
FIO C16 H16 SING N N 11
FIO C16 H16A SING N N 12
FIO C17 N18 SING N N 13
FIO C17 H17 SING N N 14
FIO C17 H17A SING N N 15
FIO N18 HN18 SING N N 16
FIO C19 N18 SING N N 17
FIO C19 N21 DOUB N N 18
FIO C20 C19 SING N N 19
FIO C20 F1 SING N N 20
FIO C20 H20 SING N N 21
FIO C20 H20A SING N N 22
FIO N21 HN21 SING N N 23
FIO N H2 SING N N 24
FIO C OXT SING N N 25
FIO OXT HXT SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FIO SMILES ACDLabs 12.01 O=C(O)C(N)CCCNC(=[N@H])CF
FIO InChI InChI 1.03 InChI=1S/C7H14FN3O2/c8-4-6(10)11-3-1-2-5(9)7(12)13/h5H,1-4,9H2,(H2,10,11)(H,12,13)/t5-/m0/s1
FIO InChIKey InChI 1.03 VHLCDEVOVRFHAP-YFKPBYRVSA-N
FIO SMILES_CANONICAL CACTVS 3.370 N[C@@H](CCCNC(=N)CF)C(O)=O
FIO SMILES CACTVS 3.370 N[CH](CCCNC(=N)CF)C(O)=O
FIO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\CF)/NCCC[C@@H](C(=O)O)N"
FIO SMILES "OpenEye OEToolkits" 1.7.6 C(CC(C(=O)O)N)CNC(=N)CF
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FIO "SYSTEMATIC NAME" ACDLabs 12.01 N~5~-[(1E)-2-fluoroethanimidoyl]-L-ornithine
FIO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-5-(2-fluoranylethanimidoylamino)pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FIO 'Create component' 2012-02-17 RCSB
FIO 'Other modification' 2012-02-21 RCSB
FIO 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FIO N N 6.404 3.750 1
FIO CA C 7.702 3.000 2
FIO C C 9.002 3.750 3
FIO O O 10.301 3.000 4
FIO C15 C 7.702 1.500 5
FIO C16 C 6.404 0.750 6
FIO C17 C 6.404 -0.750 7
FIO N18 N 5.104 -1.500 8
FIO C19 C 5.104 -3.000 9
FIO C20 C 6.404 -3.750 10
FIO N21 N 3.805 -3.750 11
FIO F1 F 6.404 -5.250 12
FIO HN21 H 3.805 -5.250 13
FIO OXT O 9.002 5.250 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FIO CA N SINGLE BEGINDASH 1
FIO CA C SINGLE NONE 2
FIO C O DOUBLE NONE 3
FIO C15 CA SINGLE NONE 4
FIO C15 C16 SINGLE NONE 5
FIO C16 C17 SINGLE NONE 6
FIO C17 N18 SINGLE NONE 7
FIO C19 N18 SINGLE ENDDOWNRIGHT 8
FIO C19 N21 DOUBLE NONE 9
FIO C20 C19 SINGLE ENDDOWNRIGHT 10
FIO C20 F1 SINGLE NONE 11
FIO C OXT SINGLE NONE 12
#
_pdbe_chem_comp_substructure.comp_id FIO
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FIO O F1 1
FIO C F1 1
FIO CA F1 1
FIO N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FIO
_pdbe_chem_comp_rdkit_properties.exactmw 191.107
_pdbe_chem_comp_rdkit_properties.amw 191.206
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.714
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 95.614
_pdbe_chem_comp_rdkit_properties.tpsa 99.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.285
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.550
_pdbe_chem_comp_rdkit_properties.chi0v 6.036
_pdbe_chem_comp_rdkit_properties.chi1v 2.742
_pdbe_chem_comp_rdkit_properties.chi2v 0.676
_pdbe_chem_comp_rdkit_properties.chi3v 0.676
_pdbe_chem_comp_rdkit_properties.chi4v 0.240
_pdbe_chem_comp_rdkit_properties.chi0n 20.036
_pdbe_chem_comp_rdkit_properties.chi1n 9.439
_pdbe_chem_comp_rdkit_properties.chi2n 0.676
_pdbe_chem_comp_rdkit_properties.chi3n 0.676
_pdbe_chem_comp_rdkit_properties.chi4n 0.240
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.170
_pdbe_chem_comp_rdkit_properties.kappa1 2.251
_pdbe_chem_comp_rdkit_properties.kappa2 6.357
_pdbe_chem_comp_rdkit_properties.kappa3 6.034
_pdbe_chem_comp_rdkit_properties.Phi 1.101
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FIO UniChem PDBe FIO
FIO UniChem ZINC ZINC000098208887
FIO UniChem PubChem 137349352
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FIO N -3.490 0.269 -0.743 ETKDGv3 1
FIO CA -2.929 -0.950 -0.151 ETKDGv3 2
FIO C -3.074 -0.963 1.351 ETKDGv3 3
FIO O -3.213 -2.061 1.955 ETKDGv3 4
FIO C15 -1.467 -1.164 -0.592 ETKDGv3 5
FIO C16 -0.499 -0.062 -0.124 ETKDGv3 6
FIO C17 0.938 -0.377 -0.553 ETKDGv3 7
FIO N18 1.857 0.674 -0.113 ETKDGv3 8
FIO C19 3.263 0.619 -0.397 ETKDGv3 9
FIO C20 4.162 1.715 0.092 ETKDGv3 10
FIO N21 3.763 -0.407 -1.014 ETKDGv3 11
FIO F1 4.646 1.389 1.345 ETKDGv3 12
FIO H -4.518 0.286 -0.552 ETKDGv3 13
FIO HA -3.510 -1.812 -0.550 ETKDGv3 14
FIO H15 -1.438 -1.222 -1.702 ETKDGv3 15
FIO H15A -1.119 -2.145 -0.200 ETKDGv3 16
FIO H16 -0.529 0.023 0.984 ETKDGv3 17
FIO H16A -0.795 0.913 -0.567 ETKDGv3 18
FIO H17 0.983 -0.460 -1.661 ETKDGv3 19
FIO H17A 1.253 -1.346 -0.108 ETKDGv3 20
FIO HN18 1.489 1.492 0.424 ETKDGv3 21
FIO H20 3.602 2.672 0.155 ETKDGv3 22
FIO H20A 5.015 1.859 -0.605 ETKDGv3 23
FIO HN21 4.786 -0.491 -1.210 ETKDGv3 24
FIO H2 -3.081 1.116 -0.286 ETKDGv3 25
FIO OXT -3.008 0.220 2.082 ETKDGv3 26
FIO HXT -3.086 0.213 3.092 ETKDGv3 27
#