data_FLT
#
_chem_comp.id FLT
_chem_comp.name 'FLUOROMALONYL TYROSINE'
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C12 H12 F N O7'
_chem_comp.mon_nstd_parent_comp_id TYR
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-08-25
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 301.225
_chem_comp.one_letter_code Y
_chem_comp.three_letter_code FLT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BZH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FLT N N N 0 1 N N N Y Y N -3.378 -4.953 28.946 0.406 1.565 3.263 N FLT 1
FLT CA CA C 0 1 N N S Y N N -2.776 -4.325 27.855 -0.282 0.358 3.738 CA FLT 2
FLT CB CB C 0 1 N N N N N N -1.252 -4.432 27.614 0.489 -0.882 3.285 CB FLT 3
FLT CG CG C 0 1 Y N N N N N -0.878 -3.866 26.235 0.564 -0.905 1.780 CG FLT 4
FLT CD1 CD1 C 0 1 Y N N N N N -0.555 -2.527 26.055 1.621 -0.293 1.131 CD1 FLT 5
FLT CE1 CE1 C 0 1 Y N N N N N -0.225 -2.030 24.783 1.691 -0.313 -0.247 CE1 FLT 6
FLT CD2 CD2 C 0 1 Y N N N N N -0.871 -4.717 25.127 -0.421 -1.543 1.050 CD2 FLT 7
FLT CE2 CE2 C 0 1 Y N N N N N -0.535 -4.240 23.872 -0.358 -1.560 -0.329 CE2 FLT 8
FLT CZ CZ C 0 1 Y N N N N N -0.218 -2.875 23.680 0.700 -0.947 -0.982 CZ FLT 9
FLT OH OH O 0 1 N N N N N N 0.112 -2.468 22.391 0.767 -0.968 -2.339 OH FLT 10
FLT C1 C1 C 0 1 N N N N N N 0.801 -1.261 22.144 0.144 0.231 -2.802 C1 FLT 11
FLT C2 C2 C 0 1 N N N N N N 2.187 -1.149 22.724 0.303 0.335 -4.297 C2 FLT 12
FLT F1 F1 F 0 1 N N N N N N 0.032 -0.201 22.488 0.748 1.336 -2.191 F1 FLT 13
FLT O1 O1 O 0 1 N N N N N N 1.125 -0.187 20.063 -2.123 -0.723 -3.000 O1 FLT 14
FLT O2 O2 O 0 1 N N N N N N 1.251 -2.491 20.266 -1.774 1.015 -1.681 O2 FLT 15
FLT O3 O3 O 0 1 N N N N N N 2.452 -0.022 23.384 -0.207 1.388 -4.955 O3 FLT 16
FLT O4 O4 O 0 1 N N N N N N 3.066 -1.971 22.542 0.889 -0.529 -4.904 O4 FLT 17
FLT C3 C3 C 0 1 N N N N N N 1.061 -1.216 20.646 -1.321 0.203 -2.453 C3 FLT 18
FLT O O O 0 1 N N N Y N Y -3.715 -4.373 25.636 0.506 0.933 5.882 O FLT 19
FLT C C C 0 1 N N N Y N Y -3.328 -4.990 26.590 -0.357 0.381 5.243 C FLT 20
FLT OXT OXT O 0 1 N Y N Y N Y -3.304 -6.431 26.638 -1.383 -0.212 5.874 OXT FLT 21
FLT H H H 0 1 N N N Y Y N -4.383 -4.882 29.104 0.525 1.458 2.267 H FLT 22
FLT H2 H2 H 0 1 N Y N Y Y N -2.901 -4.642 29.792 1.330 1.549 3.669 H2 FLT 23
FLT HA HA1 H 0 1 N N N Y N N -2.993 -3.254 28.079 -1.291 0.329 3.325 HA1 FLT 24
FLT HB2 HB2 H 0 1 N N N N N N -0.669 -3.946 28.431 1.498 -0.853 3.698 HB2 FLT 25
FLT HB3 HB3 H 0 1 N N N N N N -0.885 -5.476 27.744 -0.021 -1.778 3.637 HB3 FLT 26
FLT HD1 HD1 H 0 1 N N N N N N -0.560 -1.853 26.928 2.392 0.200 1.704 HD1 FLT 27
FLT HE1 HE1 H 0 1 N N N N N N 0.031 -0.965 24.649 2.516 0.165 -0.753 HE1 FLT 28
FLT HD2 HD2 H 0 1 N N N N N N -1.134 -5.781 25.244 -1.246 -2.020 1.558 HD2 FLT 29
FLT HE2 HE2 H 0 1 N N N N N N -0.519 -4.947 23.025 -1.131 -2.055 -0.899 HE2 FLT 30
FLT HO11 HO11 H 0 0 N N N N N N 1.287 -0.158 19.127 -3.064 -0.741 -2.776 HO11 FLT 31
FLT HO31 HO31 H 0 0 N N N N N N 3.325 0.048 23.749 -0.105 1.455 -5.914 HO31 FLT 32
FLT HXT HXT H 0 1 N Y N Y N Y -3.646 -6.843 25.853 -1.430 -0.197 6.839 HXT FLT 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FLT N CA SING N N 1
FLT N H SING N N 2
FLT N H2 SING N N 3
FLT CA CB SING N N 4
FLT CA C SING N N 5
FLT CA HA SING N N 6
FLT CB CG SING N N 7
FLT CB HB2 SING N N 8
FLT CB HB3 SING N N 9
FLT CG CD1 DOUB Y N 10
FLT CG CD2 SING Y N 11
FLT CD1 CE1 SING Y N 12
FLT CD1 HD1 SING N N 13
FLT CE1 CZ DOUB Y N 14
FLT CE1 HE1 SING N N 15
FLT CD2 CE2 DOUB Y N 16
FLT CD2 HD2 SING N N 17
FLT CE2 CZ SING Y N 18
FLT CE2 HE2 SING N N 19
FLT CZ OH SING N N 20
FLT OH C1 SING N N 21
FLT C1 C2 SING N N 22
FLT C1 F1 SING N N 23
FLT C1 C3 SING N N 24
FLT C2 O3 SING N N 25
FLT C2 O4 DOUB N N 26
FLT O1 C3 SING N N 27
FLT O1 HO11 SING N N 28
FLT O2 C3 DOUB N N 29
FLT O3 HO31 SING N N 30
FLT O C DOUB N N 31
FLT C OXT SING N N 32
FLT OXT HXT SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FLT SMILES ACDLabs 10.04 'FC(Oc1ccc(cc1)CC(C(=O)O)N)(C(=O)O)C(=O)O'
FLT SMILES_CANONICAL CACTVS 3.341 'N[C@@H](Cc1ccc(OC(F)(C(O)=O)C(O)=O)cc1)C(O)=O'
FLT SMILES CACTVS 3.341 'N[CH](Cc1ccc(OC(F)(C(O)=O)C(O)=O)cc1)C(O)=O'
FLT SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1cc(ccc1C[C@@H](C(=O)O)N)OC(C(=O)O)(C(=O)O)F'
FLT SMILES 'OpenEye OEToolkits' 1.5.0 'c1cc(ccc1CC(C(=O)O)N)OC(C(=O)O)(C(=O)O)F'
FLT InChI InChI 1.03 'InChI=1S/C12H12FNO7/c13-12(10(17)18,11(19)20)21-7-3-1-6(2-4-7)5-8(14)9(15)16/h1-4,8H,5,14H2,(H,15,16)(H,17,18)(H,19,20)/t8-/m0/s1'
FLT InChIKey InChI 1.03 AXIAXCQZCZMCQW-QMMMGPOBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FLT 'SYSTEMATIC NAME' ACDLabs 10.04 '{4-[(2S)-2-amino-2-carboxyethyl]phenoxy}(fluoro)propanedioic acid'
FLT 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '2-[4-[(2S)-2-amino-3-hydroxy-3-oxo-propyl]phenoxy]-2-fluoro-propanedioic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FLT 'Create component' 1999-08-25 RCSB
FLT 'Modify descriptor' 2011-06-04 RCSB
FLT 'Modify backbone' 2023-11-03 PDBE
FLT 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id FLT
_pdbx_chem_comp_pcm.modified_residue_id TYR
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FLT N N 3.805 -2.768 1
FLT CA C 5.104 -3.518 2
FLT CB C 6.404 -2.768 3
FLT CG C 6.404 -1.268 4
FLT CD1 C 7.702 -0.517 5
FLT CE1 C 7.702 0.983 6
FLT CD2 C 5.104 -0.517 7
FLT CE2 C 5.104 0.983 8
FLT CZ C 6.404 1.732 9
FLT OH O 6.404 3.232 10
FLT C1 C 7.702 3.982 11
FLT C2 C 9.002 4.732 12
FLT F1 F 8.453 2.683 13
FLT O1 O 5.452 5.282 14
FLT O2 O 7.702 6.580 15
FLT O3 O 9.002 6.232 16
FLT O4 O 10.301 3.982 17
FLT C3 C 6.952 5.282 18
FLT O O 3.805 -5.768 19
FLT C C 5.104 -5.018 20
FLT OXT O 6.404 -5.768 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FLT CA N SINGLE BEGINWEDGE 1
FLT CA CB SINGLE NONE 2
FLT CA C SINGLE NONE 3
FLT CB CG SINGLE NONE 4
FLT CG CD1 DOUBLE NONE 5
FLT CG CD2 SINGLE NONE 6
FLT CD1 CE1 SINGLE NONE 7
FLT CE1 CZ DOUBLE NONE 8
FLT CD2 CE2 DOUBLE NONE 9
FLT CE2 CZ SINGLE NONE 10
FLT CZ OH SINGLE NONE 11
FLT OH C1 SINGLE NONE 12
FLT C1 C2 SINGLE NONE 13
FLT C1 F1 SINGLE NONE 14
FLT C1 C3 SINGLE NONE 15
FLT C2 O3 SINGLE NONE 16
FLT C2 O4 DOUBLE NONE 17
FLT O1 C3 SINGLE NONE 18
FLT O2 C3 DOUBLE NONE 19
FLT O C DOUBLE NONE 20
FLT C OXT SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FLT MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
FLT peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
FLT phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FLT CG S1 1
FLT CD1 S1 1
FLT CE1 S1 1
FLT CD2 S1 1
FLT CE2 S1 1
FLT CZ S1 1
FLT O F1 1
FLT C F1 1
FLT CA F1 1
FLT N F1 1
FLT CG F2 1
FLT CD1 F2 1
FLT CE1 F2 1
FLT CZ F2 1
FLT CE2 F2 1
FLT CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FLT
_pdbe_chem_comp_rdkit_properties.exactmw 301.060
_pdbe_chem_comp_rdkit_properties.amw 301.226
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.343
_pdbe_chem_comp_rdkit_properties.tpsa 147.150
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.662
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.620
_pdbe_chem_comp_rdkit_properties.chi0v 9.683
_pdbe_chem_comp_rdkit_properties.chi1v 4.796
_pdbe_chem_comp_rdkit_properties.chi2v 1.807
_pdbe_chem_comp_rdkit_properties.chi3v 1.807
_pdbe_chem_comp_rdkit_properties.chi4v 0.891
_pdbe_chem_comp_rdkit_properties.chi0n 21.683
_pdbe_chem_comp_rdkit_properties.chi1n 10.415
_pdbe_chem_comp_rdkit_properties.chi2n 1.807
_pdbe_chem_comp_rdkit_properties.chi3n 1.807
_pdbe_chem_comp_rdkit_properties.chi4n 0.891
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.680
_pdbe_chem_comp_rdkit_properties.kappa1 5.978
_pdbe_chem_comp_rdkit_properties.kappa2 6.181
_pdbe_chem_comp_rdkit_properties.kappa3 3.892
_pdbe_chem_comp_rdkit_properties.Phi 1.759
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FLT UniChem ChEMBL CHEMBL431555
FLT UniChem ZINC ZINC000008378982
FLT UniChem 'PubChem TPHARMA' 15669239
FLT UniChem PubChem 10638003
FLT UniChem Nikkaji J739.575B
FLT UniChem BindingDb 50071329
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FLT N -3.455 -2.004 -0.533 ETKDGv3 1
FLT CA -3.923 -0.714 -0.016 ETKDGv3 2
FLT CB -3.052 -0.241 1.166 ETKDGv3 3
FLT CG -1.617 0.037 0.786 ETKDGv3 4
FLT CD1 -0.687 -0.931 0.851 ETKDGv3 5
FLT CE1 0.710 -0.655 0.457 ETKDGv3 6
FLT CD2 -1.224 1.387 0.315 ETKDGv3 7
FLT CE2 0.041 1.635 -0.044 ETKDGv3 8
FLT CZ 1.067 0.572 0.026 ETKDGv3 9
FLT OH 2.378 0.901 -0.364 ETKDGv3 10
FLT C1 3.510 0.024 -0.370 ETKDGv3 11
FLT C2 4.676 0.736 -0.986 ETKDGv3 12
FLT F1 3.223 -1.098 -1.133 ETKDGv3 13
FLT O1 3.727 0.532 2.075 ETKDGv3 14
FLT O2 4.369 -1.515 1.255 ETKDGv3 15
FLT O3 5.611 0.024 -1.731 ETKDGv3 16
FLT O4 4.841 1.971 -0.790 ETKDGv3 17
FLT C3 3.879 -0.375 1.030 ETKDGv3 18
FLT O -4.913 1.200 -1.067 ETKDGv3 19
FLT C -4.006 0.326 -1.105 ETKDGv3 20
FLT OXT -3.060 0.360 -2.126 ETKDGv3 21
FLT H -4.147 -2.349 -1.237 ETKDGv3 22
FLT H2 -2.544 -1.882 -1.032 ETKDGv3 23
FLT HA -4.950 -0.867 0.385 ETKDGv3 24
FLT HB2 -3.499 0.681 1.599 ETKDGv3 25
FLT HB3 -3.087 -1.008 1.970 ETKDGv3 26
FLT HD1 -0.949 -1.927 1.187 ETKDGv3 27
FLT HE1 1.424 -1.462 0.526 ETKDGv3 28
FLT HD2 -1.962 2.177 0.256 ETKDGv3 29
FLT HE2 0.317 2.624 -0.388 ETKDGv3 30
FLT HO11 3.986 0.281 3.022 ETKDGv3 31
FLT HO31 6.415 0.488 -2.137 ETKDGv3 32
FLT HXT -3.098 1.071 -2.847 ETKDGv3 33
#