data_FMN
#
_chem_comp.id FMN
_chem_comp.name "FLAVIN MONONUCLEOTIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H21 N4 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "RIBOFLAVIN MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 456.344
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FMN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FLM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FMN N1 N1 N 0 1 N N N N N N 33.864 7.225 13.583 2.118 -2.493 0.531 N1 FMN 1
FMN C2 C2 C 0 1 N N N N N N 33.031 6.319 13.062 2.713 -3.638 0.206 C2 FMN 2
FMN O2 O2 O 0 1 N N N N N N 33.185 5.133 13.215 2.122 -4.677 0.445 O2 FMN 3
FMN N3 N3 N 0 1 N N N N N N 31.974 6.721 12.176 3.921 -3.721 -0.368 N3 FMN 4
FMN C4 C4 C 0 1 N N N N N N 31.788 8.007 11.826 4.636 -2.610 -0.664 C4 FMN 5
FMN O4 O4 O 0 1 N N N N N N 30.899 8.358 11.037 5.732 -2.682 -1.185 O4 FMN 6
FMN C4A C4A C 0 1 N N N N N N 32.736 8.990 12.357 4.027 -1.305 -0.325 C4A FMN 7
FMN N5 N5 N 0 1 N N N N N N 32.559 10.279 12.130 4.631 -0.170 -0.566 N5 FMN 8
FMN C5A C5A C 0 1 Y N N N N N 33.345 11.186 12.722 4.051 0.995 -0.246 C5A FMN 9
FMN C6 C6 C 0 1 Y N N N N N 33.122 12.607 12.487 4.718 2.206 -0.514 C6 FMN 10
FMN C7 C7 C 0 1 Y N N N N N 33.814 13.518 13.226 4.131 3.392 -0.190 C7 FMN 11
FMN C7M C7M C 0 1 N N N N N N 33.489 15.018 13.122 4.850 4.683 -0.480 C7M FMN 12
FMN C8 C8 C 0 1 Y N N N N N 34.893 13.117 14.090 2.874 3.423 0.405 C8 FMN 13
FMN C8M C8M C 0 1 N N N N N N 35.812 14.115 14.778 2.246 4.748 0.752 C8M FMN 14
FMN C9 C9 C 0 1 Y N N N N N 35.153 11.792 14.273 2.197 2.255 0.678 C9 FMN 15
FMN C9A C9A C 0 1 Y N N N N N 34.382 10.809 13.674 2.774 1.029 0.359 C9A FMN 16
FMN N10 N10 N 0 1 N N N N N N 34.557 9.434 13.883 2.101 -0.144 0.631 N10 FMN 17
FMN C10 C10 C 0 1 N N N N N N 33.786 8.495 13.263 2.695 -1.325 0.304 C10 FMN 18
FMN "C1'" "C1'" C 0 1 N N N N N N 35.554 8.925 14.861 0.777 -0.119 1.258 "C1'" FMN 19
FMN "C2'" "C2'" C 0 1 N N S N N N 34.789 8.587 16.157 -0.300 -0.060 0.173 "C2'" FMN 20
FMN "O2'" "O2'" O 0 1 N N N N N N 34.417 9.829 16.794 -0.122 1.121 -0.611 "O2'" FMN 21
FMN "C3'" "C3'" C 0 1 N N S N N N 35.681 7.821 17.150 -1.683 -0.035 0.827 "C3'" FMN 22
FMN "O3'" "O3'" O 0 1 N N N N N N 36.849 8.662 17.488 -1.860 -1.217 1.611 "O3'" FMN 23
FMN "C4'" "C4'" C 0 1 N N R N N N 36.212 6.518 16.591 -2.760 0.024 -0.258 "C4'" FMN 24
FMN "O4'" "O4'" O 0 1 N N N N N N 35.149 5.804 15.909 -2.582 1.206 -1.042 "O4'" FMN 25
FMN "C5'" "C5'" C 0 1 N N N N N N 36.712 5.634 17.721 -4.142 0.049 0.397 "C5'" FMN 26
FMN "O5'" "O5'" O 0 1 N N N N N N 35.604 5.252 18.579 -5.149 -0.013 -0.615 "O5'" FMN 27
FMN P P P 0 1 N N N N N N 35.837 4.628 20.038 -6.725 -0.007 -0.285 P FMN 28
FMN O1P O1P O 0 1 N N N N N N 36.585 5.692 20.802 -7.053 1.180 0.536 O1P FMN 29
FMN O2P O2P O 0 1 N N N N N N 36.682 3.364 19.847 -7.561 0.045 -1.660 O2P FMN 30
FMN O3P O3P O 0 1 N N N N N N 34.436 4.306 20.554 -7.109 -1.344 0.526 O3P FMN 31
FMN HN3 HN3 H 0 1 N N N N N N 31.358 6.024 11.808 4.291 -4.593 -0.577 HN3 FMN 32
FMN H6 H6 H 0 1 N N N N N N 32.417 12.933 11.737 5.695 2.195 -0.975 H6 FMN 33
FMN HM71 HM71 H 0 0 N N N N N N 32.733 15.283 13.876 4.585 5.031 -1.479 HM71 FMN 34
FMN HM72 HM72 H 0 0 N N N N N N 34.403 15.604 13.297 4.560 5.434 0.255 HM72 FMN 35
FMN HM73 HM73 H 0 0 N N N N N N 33.098 15.240 12.118 5.927 4.520 -0.427 HM73 FMN 36
FMN HM81 HM81 H 0 0 N N N N N N 35.406 14.366 15.769 1.656 5.103 -0.093 HM81 FMN 37
FMN HM82 HM82 H 0 0 N N N N N N 36.813 13.673 14.893 1.599 4.627 1.622 HM82 FMN 38
FMN HM83 HM83 H 0 0 N N N N N N 35.883 15.028 14.169 3.028 5.473 0.979 HM83 FMN 39
FMN H9 H9 H 0 1 N N N N N N 35.982 11.500 14.901 1.222 2.290 1.141 H9 FMN 40
FMN "H1'1" "H1'1" H 0 0 N N N N N N 36.043 8.023 14.466 0.642 -1.021 1.856 "H1'1" FMN 41
FMN "H1'2" "H1'2" H 0 0 N N N N N N 36.313 9.696 15.061 0.695 0.758 1.899 "H1'2" FMN 42
FMN "H2'" "H2'" H 0 1 N N N N N N 33.900 7.985 15.916 -0.218 -0.938 -0.469 "H2'" FMN 43
FMN "HO2'" "HO2'" H 0 0 N N N N N N 33.943 9.644 17.597 -0.183 1.942 -0.104 "HO2'" FMN 44
FMN "H3'" "H3'" H 0 1 N N N N N N 35.100 7.613 18.061 -1.765 0.842 1.469 "H3'" FMN 45
FMN "HO3'" "HO3'" H 0 0 N N N N N N 37.407 8.198 18.101 -1.800 -2.038 1.104 "HO3'" FMN 46
FMN "H4'" "H4'" H 0 1 N N N N N N 37.039 6.727 15.897 -2.677 -0.853 -0.900 "H4'" FMN 47
FMN "HO4'" "HO4'" H 0 0 N N N N N N 35.488 4.988 15.561 -2.642 2.027 -0.535 "HO4'" FMN 48
FMN "H5'1" "H5'1" H 0 0 N N N N N N 37.175 4.730 17.299 -4.244 -0.807 1.064 "H5'1" FMN 49
FMN "H5'2" "H5'2" H 0 0 N N N N N N 37.458 6.185 18.312 -4.257 0.971 0.967 "H5'2" FMN 50
FMN HOP2 HOP2 H 0 0 N N N N N N 37.533 3.487 20.251 -8.520 0.051 -1.537 HOP2 FMN 51
FMN HOP3 HOP3 H 0 0 N N N N N N 34.244 4.849 21.309 -6.921 -2.162 0.047 HOP3 FMN 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FMN N1 C2 SING N N 1
FMN N1 C10 DOUB N N 2
FMN C2 O2 DOUB N N 3
FMN C2 N3 SING N N 4
FMN N3 C4 SING N N 5
FMN N3 HN3 SING N N 6
FMN C4 O4 DOUB N N 7
FMN C4 C4A SING N N 8
FMN C4A N5 DOUB N N 9
FMN C4A C10 SING N N 10
FMN N5 C5A SING N N 11
FMN C5A C6 DOUB Y N 12
FMN C5A C9A SING Y N 13
FMN C6 C7 SING Y N 14
FMN C6 H6 SING N N 15
FMN C7 C7M SING N N 16
FMN C7 C8 DOUB Y N 17
FMN C7M HM71 SING N N 18
FMN C7M HM72 SING N N 19
FMN C7M HM73 SING N N 20
FMN C8 C8M SING N N 21
FMN C8 C9 SING Y N 22
FMN C8M HM81 SING N N 23
FMN C8M HM82 SING N N 24
FMN C8M HM83 SING N N 25
FMN C9 C9A DOUB Y N 26
FMN C9 H9 SING N N 27
FMN C9A N10 SING N N 28
FMN N10 C10 SING N N 29
FMN N10 "C1'" SING N N 30
FMN "C1'" "C2'" SING N N 31
FMN "C1'" "H1'1" SING N N 32
FMN "C1'" "H1'2" SING N N 33
FMN "C2'" "O2'" SING N N 34
FMN "C2'" "C3'" SING N N 35
FMN "C2'" "H2'" SING N N 36
FMN "O2'" "HO2'" SING N N 37
FMN "C3'" "O3'" SING N N 38
FMN "C3'" "C4'" SING N N 39
FMN "C3'" "H3'" SING N N 40
FMN "O3'" "HO3'" SING N N 41
FMN "C4'" "O4'" SING N N 42
FMN "C4'" "C5'" SING N N 43
FMN "C4'" "H4'" SING N N 44
FMN "O4'" "HO4'" SING N N 45
FMN "C5'" "O5'" SING N N 46
FMN "C5'" "H5'1" SING N N 47
FMN "C5'" "H5'2" SING N N 48
FMN "O5'" P SING N N 49
FMN P O1P DOUB N N 50
FMN P O2P SING N N 51
FMN P O3P SING N N 52
FMN O2P HOP2 SING N N 53
FMN O3P HOP3 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FMN SMILES ACDLabs 12.01 N=2C(=O)NC(=O)C3=Nc1cc(C)c(C)cc1N(C=23)CC(O)C(O)C(O)COP(=O)(O)O
FMN InChI InChI 1.03 InChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,14-/m0/s1
FMN InChIKey InChI 1.03 FVTCRASFADXXNN-SCRDCRAPSA-N
FMN SMILES_CANONICAL CACTVS 3.385 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C
FMN SMILES CACTVS 3.385 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C
FMN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
FMN SMILES "OpenEye OEToolkits" 1.7.6 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FMN "SYSTEMATIC NAME" ACDLabs 12.01 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-5-O-phosphono-D-ribitol
FMN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4S)-5-[7,8-dimethyl-2,4-bis(oxidanylidene)benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FMN 'Create component' 1999-07-08 RCSB
FMN 'Modify aromatic_flag' 2011-06-04 RCSB
FMN 'Modify descriptor' 2011-06-04 RCSB
FMN 'Modify aromatic_flag' 2016-02-17 RCSB
FMN 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id FMN
_pdbx_chem_comp_synonyms.name "RIBOFLAVIN MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id FMN
_pdbe_chem_comp_drugbank_details.drugbank_id DB03247
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Flavin mononucleotide'
_pdbe_chem_comp_drugbank_details.description
'A coenzyme for a number of oxidative enzymes including NADH DEHYDROGENASE. It is the principal form in which RIBOFLAVIN is found in cells and tissues.'
_pdbe_chem_comp_drugbank_details.cas_number 146-17-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
FMN 'RIBOFLAVIN MONOPHOSPHATE' wwPDB ?
FMN FMN DrugBank ?
FMN "riboflavin 5'-(dihydrogen phosphate)" DrugBank ?
FMN "riboflavin 5'-monophosphate" DrugBank ?
FMN "riboflavin 5'-phosphate" DrugBank ?
FMN 'Riboflavin monophosphate' DrugBank ?
FMN 'Riboflavin phosphate' DrugBank ?
FMN Riboflavin-5-phosphate DrugBank ?
FMN 'riboflavine dihydrogen phosphate' DrugBank ?
FMN 'Vitamin B2 (riboflavin-5-phosphate)' DrugBank ?
FMN 'Vitamin B2 phosphate' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id FMN
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03247
_pdbe_chem_comp_drugbank_classification.parent 'Flavin nucleotides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Flavin nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as flavin nucleotides. These are nucleotides containing a flavin moiety. Flavin is a compound that contains the tricyclic isoalloxazine ring system, which bears 2 oxo groups at the 2- and 4-positions.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
FMN DB03247 'Flavin reductase (NADPH)' Humans P30043 unknown 1
FMN DB03247 'Hydroxyacid oxidase 1' Humans Q9UJM8 unknown 2
FMN DB03247 "Pyridoxine-5'-phosphate oxidase" Humans Q9NVS9 unknown 3
FMN DB03247 'Major NAD(P)H-flavin oxidoreductase' 'Aliivibrio fischeri' P46072 unknown 4
FMN DB03247 'Riboflavin kinase' Humans Q969G6 unknown 5
FMN DB03247 'Oxygen-insensitive NADPH nitroreductase' 'Escherichia coli (strain K12)' P17117 unknown 6
FMN DB03247 'Nitric oxide synthase, brain' Humans P29475 unknown 7
FMN DB03247 'Dihydroorotate dehydrogenase (quinone)' 'Escherichia coli (strain K12)' P0A7E1 unknown 8
FMN DB03247 'Dihydropyrimidine dehydrogenase [NADP(+)]' Humans Q12882 unknown 9
FMN DB03247 'Dihydroorotate dehydrogenase (quinone), mitochondrial' Humans Q02127 unknown 10
FMN DB03247 Flavodoxin 'Clostridium beijerinckii' P00322 unknown 11
FMN DB03247 'Oxygen-insensitive NAD(P)H nitroreductase' 'Escherichia coli (strain K12)' P38489 unknown 12
FMN DB03247 'Chorismate synthase' 'Streptococcus pneumoniae (strain ATCC BAA-255 / R6)' P0A2Y7 unknown 13
FMN DB03247 '2,4-dienoyl-CoA reductase [NADPH]' 'Escherichia coli (strain K12)' P42593 unknown 14
FMN DB03247 'Dihydroorotate dehydrogenase A (fumarate)' 'Lactococcus lactis subsp. cremoris' Q53ZE5 unknown 15
FMN DB03247 "Pyridoxine/pyridoxamine 5'-phosphate oxidase" 'Escherichia coli (strain K12)' P0AFI7 unknown 16
FMN DB03247 'Pentaerythritol tetranitrate reductase' 'Enterobacter cloacae' P71278 unknown 17
FMN DB03247 'FMN-dependent NADH-azoreductase' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' P63462 unknown 18
FMN DB03247 'Epidermin decarboxylase' 'Staphylococcus epidermidis' P30197 unknown 19
FMN DB03247 'FMN-dependent NADH-azoreductase' 'Escherichia coli (strain K12)' P41407 unknown 20
FMN DB03247 'Chorismate synthase' 'Helicobacter pylori (strain ATCC 700392 / 26695)' P56122 unknown 21
FMN DB03247 Flavodoxin 'Nostoc sp. (strain PCC 7120 / UTEX 2576)' P0A3D9 unknown 22
FMN DB03247 Flavodoxin 'Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)' P00323 unknown 23
FMN DB03247 Flavodoxin 'Synechococcus elongatus (strain PCC 7942)' P10340 unknown 24
FMN DB03247 'Uncharacterized protein' 'Streptococcus mutans serotype c (strain ATCC 700610 / UA159)' Q8DW21 unknown 25
FMN DB03247 'Putative monooxygenase MoxC' 'Bacillus subtilis (strain 168)' O34974 unknown 26
FMN DB03247 'tRNA-dihydrouridine synthase' 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' Q9WXV1 unknown 27
FMN DB03247 'Protein NrdI' 'Bacillus subtilis (strain 168)' P50618 unknown 28
FMN DB03247 'Probable UbiX-like flavin prenyltransferase' 'Escherichia coli O157:H7' P69772 unknown 29
FMN DB03247 '(S)-mandelate dehydrogenase' 'Pseudomonas putida' P20932 unknown 30
FMN DB03247 'FMN-dependent NADPH-azoreductase' 'Bacillus subtilis (strain 168)' O07529 unknown 31
FMN DB03247 Flavodoxin 'Helicobacter pylori (strain J99 / ATCC 700824)' Q9ZK53 unknown 32
FMN DB03247 'Serine/threonine-protein kinase Sgk1' Humans O00141 unknown 33
FMN DB03247 'Oxygen-insensitive NAD(P)H nitroreductase' 'Enterobacter cloacae' Q01234 unknown 34
FMN DB03247 'Nitric oxide reductase' 'Moorella thermoacetica (strain ATCC 39073)' Q9FDN7 unknown 35
FMN DB03247 'Isopentenyl-diphosphate delta-isomerase' 'Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)' Q746I8 unknown 36
FMN DB03247 'Trimethylamine dehydrogenase' 'Methylophilus methylotrophus' P16099 unknown 37
FMN DB03247 'Rubredoxin-oxygen oxidoreductase' 'Desulfovibrio gigas' Q9F0J6 unknown 38
FMN DB03247 'Riboflavin biosynthesis protein' 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' Q9WZW1 unknown 39
FMN DB03247 'Morphinone reductase' 'Pseudomonas putida' Q51990 unknown 40
FMN DB03247 'NADPH-flavin oxidoreductase' 'Vibrio harveyi' Q56691 unknown 41
FMN DB03247 'Ribosomal protein S6 kinase alpha-4' Humans O75676 unknown 42
FMN DB03247 'Phenazine biosynthesis protein PhzG' 'Pseudomonas fluorescens' Q51793 unknown 43
FMN DB03247 'Hydroxyacid oxidase 2' Humans Q9NYQ3 unknown 44
FMN DB03247 'NAD(P)H dehydrogenase (quinone)' 'Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)' Q9RYU4 unknown 45
FMN DB03247 Flavodoxin-1 'Escherichia coli (strain K12)' P61949 unknown 46
FMN DB03247 'Isopentenyl-diphosphate delta-isomerase' 'Bacillus subtilis (strain 168)' P50740 unknown 47
FMN DB03247 'NADH dehydrogenase' 'Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)' Q60049 unknown 48
FMN DB03247 'FMN-binding protein' 'Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)' Q46604 unknown 49
FMN DB03247 'Nitroreductase family protein' 'Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)' Q81EW9 unknown 50
FMN DB03247 'NADPH--cytochrome P450 reductase' Humans P16435 unknown 51
FMN DB03247 'Phosphopantothenoylcysteine decarboxylase' Humans Q96CD2 unknown 52
FMN DB03247 'Phenazine biosynthesis protein' 'Pseudomonas aeruginosa' O69755 unknown 53
FMN DB03247 'Ferredoxin-dependent glutamate synthase 2' 'Synechocystis sp. (strain PCC 6803 / Kazusa)' P55038 unknown 54
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FMN N1 N 11.502 -2.780 1
FMN C2 C 12.861 -3.550 2
FMN O2 O 14.157 -2.795 3
FMN N3 N 12.861 -5.113 4
FMN C4 C 11.502 -5.884 5
FMN O4 O 11.485 -7.383 6
FMN C4A C 10.161 -5.082 7
FMN N5 N 8.862 -5.832 8
FMN C5A C 7.563 -5.082 9
FMN C6 C 6.222 -5.884 10
FMN C7 C 4.863 -5.113 11
FMN C7M C 3.567 -5.868 12
FMN C8 C 4.863 -3.550 13
FMN C8M C 3.567 -2.795 14
FMN C9 C 6.222 -2.780 15
FMN C9A C 7.563 -3.582 16
FMN N10 N 8.862 -2.832 17
FMN C10 C 10.161 -3.582 18
FMN "C1'" C 8.862 -1.332 19
FMN "C2'" C 7.563 -0.582 20
FMN "O2'" O 6.264 -1.332 21
FMN "C3'" C 7.563 0.918 22
FMN "O3'" O 8.862 1.668 23
FMN "C4'" C 6.264 1.668 24
FMN "O4'" O 4.965 0.918 25
FMN "C5'" C 6.264 3.168 26
FMN "O5'" O 4.965 3.918 27
FMN P P 4.965 5.418 28
FMN O1P O 4.965 6.918 29
FMN O2P O 3.465 5.418 30
FMN O3P O 6.465 5.418 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FMN N1 C2 SINGLE NONE 1
FMN N1 C10 DOUBLE NONE 2
FMN C2 O2 DOUBLE NONE 3
FMN C2 N3 SINGLE NONE 4
FMN N3 C4 SINGLE NONE 5
FMN C4 O4 DOUBLE NONE 6
FMN C4 C4A SINGLE NONE 7
FMN C4A N5 DOUBLE NONE 8
FMN C4A C10 SINGLE NONE 9
FMN N5 C5A SINGLE NONE 10
FMN C5A C6 SINGLE NONE 11
FMN C5A C9A DOUBLE NONE 12
FMN C6 C7 DOUBLE NONE 13
FMN C7 C7M SINGLE NONE 14
FMN C7 C8 SINGLE NONE 15
FMN C8 C8M SINGLE NONE 16
FMN C8 C9 DOUBLE NONE 17
FMN C9 C9A SINGLE NONE 18
FMN C9A N10 SINGLE NONE 19
FMN N10 C10 SINGLE NONE 20
FMN N10 "C1'" SINGLE NONE 21
FMN "C1'" "C2'" SINGLE NONE 22
FMN "C2'" "O2'" SINGLE BEGINDASH 23
FMN "C2'" "C3'" SINGLE NONE 24
FMN "C3'" "O3'" SINGLE BEGINWEDGE 25
FMN "C3'" "C4'" SINGLE NONE 26
FMN "C4'" "O4'" SINGLE BEGINDASH 27
FMN "C4'" "C5'" SINGLE NONE 28
FMN "C5'" "O5'" SINGLE NONE 29
FMN "O5'" P SINGLE NONE 30
FMN P O1P DOUBLE NONE 31
FMN P O2P SINGLE NONE 32
FMN P O3P SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FMN MurckoScaffold S1 scaffold 'O=c1nc2[nH]c3ccccc3nc-2c(=O)[nH]1' InChI=1S/C10H6N4O2/c15-9-7-8(13-10(16)14-9)12-6-4-2-1-3-5(6)11-7/h1-4H,(H2,12,13,14,15,16) HAUGRYOERYOXHX-UHFFFAOYSA-N
FMN phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
FMN phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FMN N1 S1 1
FMN C2 S1 1
FMN O2 S1 1
FMN N3 S1 1
FMN C4 S1 1
FMN O4 S1 1
FMN C4A S1 1
FMN N5 S1 1
FMN C5A S1 1
FMN C6 S1 1
FMN C7 S1 1
FMN C8 S1 1
FMN C9 S1 1
FMN C9A S1 1
FMN N10 S1 1
FMN C10 S1 1
FMN C5A F1 1
FMN C6 F1 1
FMN C7 F1 1
FMN C8 F1 1
FMN C9 F1 1
FMN C9A F1 1
FMN "O5'" F2 1
FMN P F2 1
FMN O1P F2 1
FMN O2P F2 1
FMN O3P F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FMN
_pdbe_chem_comp_rdkit_properties.exactmw 456.105
_pdbe_chem_comp_rdkit_properties.amw 456.348
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.412
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 203.746
_pdbe_chem_comp_rdkit_properties.tpsa 208.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.725
_pdbe_chem_comp_rdkit_properties.CrippenMR 102.687
_pdbe_chem_comp_rdkit_properties.chi0v 15.305
_pdbe_chem_comp_rdkit_properties.chi1v 8.928
_pdbe_chem_comp_rdkit_properties.chi2v 3.624
_pdbe_chem_comp_rdkit_properties.chi3v 3.624
_pdbe_chem_comp_rdkit_properties.chi4v 2.301
_pdbe_chem_comp_rdkit_properties.chi0n 35.410
_pdbe_chem_comp_rdkit_properties.chi1n 17.456
_pdbe_chem_comp_rdkit_properties.chi2n 3.309
_pdbe_chem_comp_rdkit_properties.chi3n 3.309
_pdbe_chem_comp_rdkit_properties.chi4n 2.106
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.510
_pdbe_chem_comp_rdkit_properties.kappa1 8.121
_pdbe_chem_comp_rdkit_properties.kappa2 8.553
_pdbe_chem_comp_rdkit_properties.kappa3 5.047
_pdbe_chem_comp_rdkit_properties.Phi 2.241
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FMN UniChem ChEMBL CHEMBL1201794
FMN UniChem DrugBank DB03247
FMN UniChem PDBe FMN
FMN UniChem 'Guide to Pharmacology' 5185
FMN UniChem 'KEGG LIGAND' C00061
FMN UniChem ChEBI 17621
FMN UniChem ZINC ZINC000003831425
FMN UniChem fdasrs 7N464URE7E
FMN UniChem SureChEMBL SCHEMBL21544837
FMN UniChem HMDB HMDB0001520
FMN UniChem NMRShiftDB 60023380
FMN UniChem ACTor 146-17-8
FMN UniChem Nikkaji J30.175B
FMN UniChem BindingDb 50421345
FMN UniChem DrugCentral 2374
FMN UniChem MetaboLights MTBLC17621
FMN UniChem BRENDA 10904
FMN UniChem BRENDA 224523
FMN UniChem BRENDA 244973
FMN UniChem BRENDA 44767
FMN UniChem BRENDA 56
FMN UniChem BRENDA 6024
FMN UniChem BRENDA 94918
FMN UniChem ClinicalTrials 'FLAVIN MONONUCLEOTIDE'
FMN UniChem ClinicalTrials "RIBOFLAVIN 5'-PHOSPHATE"
FMN UniChem ClinicalTrials "RIBOFLAVIN 5'-PHOSPHATE SODIUM"
FMN UniChem ClinicalTrials 'RIBOFLAVIN PHOSPHATE'
FMN UniChem rxnorm PHOTREXA
FMN UniChem rxnorm "RIBOFLAVIN 5'-PHOSPHATE"
FMN UniChem rxnorm "RIBOFLAVIN 5'-PHOSPHATE SODIUM"
FMN UniChem MedChemExpress HY-B0964A
FMN UniChem 'Probes And Drugs' PD013574
FMN UniChem 'EPA CompTox Dashboard' DTXSID8023559
FMN UniChem SureChEMBL SCHEMBL41133
FMN UniChem 'PubChem TPHARMA' 14857921
FMN UniChem PubChem 643976
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FMN N1 0.003 -2.951 0.188 ETKDGv3 1
FMN C2 0.385 -4.025 -0.684 ETKDGv3 2
FMN O2 1.188 -4.904 -0.279 ETKDGv3 3
FMN N3 -0.141 -4.090 -2.014 ETKDGv3 4
FMN C4 -1.059 -3.087 -2.448 ETKDGv3 5
FMN O4 -1.537 -3.123 -3.614 ETKDGv3 6
FMN C4A -1.435 -2.022 -1.510 ETKDGv3 7
FMN N5 -2.290 -1.107 -1.843 ETKDGv3 8
FMN C5A -2.699 -0.066 -0.944 ETKDGv3 9
FMN C6 -3.722 0.892 -1.404 ETKDGv3 10
FMN C7 -4.176 1.861 -0.593 ETKDGv3 11
FMN C7M -5.214 2.831 -1.091 ETKDGv3 12
FMN C8 -3.615 1.983 0.783 ETKDGv3 13
FMN C8M -4.108 3.058 1.716 ETKDGv3 14
FMN C9 -2.690 1.101 1.205 ETKDGv3 15
FMN C9A -2.180 0.024 0.305 ETKDGv3 16
FMN N10 -1.159 -0.925 0.733 ETKDGv3 17
FMN C10 -0.830 -2.011 -0.165 ETKDGv3 18
FMN "C1'" -0.518 -0.851 2.062 ETKDGv3 19
FMN "C2'" 0.682 0.133 2.138 ETKDGv3 20
FMN "O2'" 0.308 1.467 1.897 ETKDGv3 21
FMN "C3'" 1.958 -0.301 1.336 ETKDGv3 22
FMN "O3'" 3.087 -0.190 2.168 ETKDGv3 23
FMN "C4'" 2.205 0.470 0.003 ETKDGv3 24
FMN "O4'" 1.127 0.296 -0.882 ETKDGv3 25
FMN "C5'" 3.522 0.049 -0.686 ETKDGv3 26
FMN "O5'" 4.623 0.553 0.035 ETKDGv3 27
FMN P 6.057 0.091 -0.766 ETKDGv3 28
FMN O1P 6.114 0.728 -2.138 ETKDGv3 29
FMN O2P 6.139 -1.595 -0.909 ETKDGv3 30
FMN O3P 7.382 0.622 0.142 ETKDGv3 31
FMN HN3 0.141 -4.864 -2.657 ETKDGv3 32
FMN H6 -4.106 0.794 -2.412 ETKDGv3 33
FMN HM71 -6.039 2.915 -0.354 ETKDGv3 34
FMN HM72 -4.749 3.829 -1.235 ETKDGv3 35
FMN HM73 -5.656 2.506 -2.057 ETKDGv3 36
FMN HM81 -5.146 2.826 2.033 ETKDGv3 37
FMN HM82 -4.093 4.042 1.203 ETKDGv3 38
FMN HM83 -3.474 3.144 2.625 ETKDGv3 39
FMN H9 -2.309 1.197 2.210 ETKDGv3 40
FMN "H1'1" -0.168 -1.855 2.384 ETKDGv3 41
FMN "H1'2" -1.269 -0.590 2.835 ETKDGv3 42
FMN "H2'" 0.967 0.100 3.214 ETKDGv3 43
FMN "HO2'" -0.025 1.530 0.968 ETKDGv3 44
FMN "H3'" 1.866 -1.378 1.086 ETKDGv3 45
FMN "HO3'" 3.187 0.770 2.404 ETKDGv3 46
FMN "H4'" 2.284 1.556 0.225 ETKDGv3 47
FMN "HO4'" 1.188 -0.622 -1.253 ETKDGv3 48
FMN "H5'1" 3.556 -1.062 -0.743 ETKDGv3 49
FMN "H5'2" 3.517 0.468 -1.718 ETKDGv3 50
FMN HOP2 5.689 -1.807 -1.766 ETKDGv3 51
FMN HOP3 7.231 1.593 0.265 ETKDGv3 52
#