data_FW2
#
_chem_comp.id FW2
_chem_comp.name L-2-keto-3deoxy-gluconate
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H10 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-08-01
_chem_comp.pdbx_modified_date 2019-08-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 178.140
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FW2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6H7S
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FW2 C1 C1 C 0 1 N N N N N N -40.586 12.453 -14.781 3.016 -0.358 -0.087 C1 FW2 1
FW2 C2 C2 C 0 1 N N N N N N -41.379 12.751 -13.510 1.686 0.272 0.153 C2 FW2 2
FW2 C3 C3 C 0 1 N N N N N N -40.779 13.692 -12.468 0.426 -0.453 -0.244 C3 FW2 3
FW2 C4 C4 C 0 1 N N R N N N -41.452 15.057 -12.552 -0.789 0.406 0.109 C4 FW2 4
FW2 C5 C5 C 0 1 N N S N N N -41.079 15.701 -13.883 -2.070 -0.381 -0.178 C5 FW2 5
FW2 C6 C6 C 0 1 N N N N N N -41.286 17.212 -13.854 -3.286 0.478 0.175 C6 FW2 6
FW2 O1 O1 O 0 1 N N N N N N -39.591 13.162 -15.080 4.141 0.290 0.267 O1 FW2 7
FW2 O2 O2 O 0 1 N N N N N N -40.912 11.502 -15.537 3.084 -1.456 -0.597 O2 FW2 8
FW2 O4 O3 O 0 1 N N N N N N -41.036 15.843 -11.475 -0.775 1.598 -0.678 O4 FW2 9
FW2 O5 O4 O 0 1 N N N N N N -41.860 15.126 -14.894 -2.084 -1.573 0.610 O5 FW2 10
FW2 O6 O5 O 0 1 N N N N N N -41.059 17.746 -15.130 -4.481 -0.209 -0.201 O6 FW2 11
FW2 H7 H3 H 0 1 N N N N N N -40.934 13.270 -11.464 0.438 -0.642 -1.317 H7 FW2 12
FW2 H8 H4 H 0 1 N N N N N N -39.701 13.805 -12.656 0.369 -1.401 0.291 H8 FW2 13
FW2 H1 H5 H 0 1 N N N N N N -42.542 14.914 -12.524 -0.754 0.668 1.167 H1 FW2 14
FW2 H H6 H 0 1 N N N N N N -40.014 15.503 -14.074 -2.106 -0.643 -1.235 H FW2 15
FW2 H4 H7 H 0 1 N N N N N N -40.583 17.663 -13.139 -3.298 0.667 1.249 H4 FW2 16
FW2 H3 H8 H 0 1 N N N N N N -42.318 17.434 -13.543 -3.229 1.426 -0.360 H3 FW2 17
FW2 H11 H9 H 0 1 N N N N N N -39.210 12.847 -15.891 4.980 -0.158 0.092 H11 FW2 18
FW2 H6 H10 H 0 1 N N N N N N -41.280 15.420 -10.660 -0.805 1.439 -1.632 H6 FW2 19
FW2 H5 H11 H 0 1 N N N N N N -41.724 14.186 -14.904 -2.054 -1.414 1.563 H5 FW2 20
FW2 H2 H12 H 0 1 N N N N N N -41.189 18.687 -15.108 -5.293 0.278 -0.006 H2 FW2 21
FW2 O3 O6 O 0 1 N Y N N N N -42.471 12.100 -13.475 1.619 1.363 0.665 O3 FW2 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FW2 O2 C1 DOUB N N 1
FW2 O6 C6 SING N N 2
FW2 O1 C1 SING N N 3
FW2 O5 C5 SING N N 4
FW2 C1 C2 SING N N 5
FW2 C5 C6 SING N N 6
FW2 C5 C4 SING N N 7
FW2 C2 C3 SING N N 8
FW2 C4 C3 SING N N 9
FW2 C4 O4 SING N N 10
FW2 C3 H7 SING N N 11
FW2 C3 H8 SING N N 12
FW2 C4 H1 SING N N 13
FW2 C5 H SING N N 14
FW2 C6 H4 SING N N 15
FW2 C6 H3 SING N N 16
FW2 O1 H11 SING N N 17
FW2 O4 H6 SING N N 18
FW2 O5 H5 SING N N 19
FW2 O6 H2 SING N N 20
FW2 C2 O3 DOUB N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FW2 InChI InChI 1.03 InChI=1S/C6H10O6/c7-2-5(10)3(8)1-4(9)6(11)12/h3,5,7-8,10H,1-2H2,(H,11,12)/t3-,5+/m1/s1
FW2 InChIKey InChI 1.03 WPAMZTWLKIDIOP-WUJLRWPWSA-N
FW2 SMILES_CANONICAL CACTVS 3.385 OC[C@H](O)[C@H](O)CC(=O)C(O)=O
FW2 SMILES CACTVS 3.385 OC[CH](O)[CH](O)CC(=O)C(O)=O
FW2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C([C@H]([C@H](CO)O)O)C(=O)C(=O)O
FW2 SMILES "OpenEye OEToolkits" 2.0.6 C(C(C(CO)O)O)C(=O)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id FW2
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "(4~{R},5~{S})-4,5,6-tris(oxidanyl)-2-oxidanylidene-hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FW2 'Create component' 2018-08-01 EBI
FW2 'Other modification' 2018-08-02 EBI
FW2 'Initial release' 2019-08-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FW2 C1 C 5.104 0.375 1
FW2 C2 C 6.404 -0.375 2
FW2 C3 C 7.702 0.375 3
FW2 C4 C 9.002 -0.375 4
FW2 C5 C 10.301 0.375 5
FW2 C6 C 11.600 -0.375 6
FW2 O1 O 5.104 1.875 7
FW2 O2 O 3.805 -0.375 8
FW2 O4 O 9.002 -1.875 9
FW2 O5 O 10.301 1.875 10
FW2 O6 O 12.899 0.375 11
FW2 O3 O 6.404 -1.875 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FW2 O2 C1 DOUBLE NONE 1
FW2 O6 C6 SINGLE NONE 2
FW2 O1 C1 SINGLE NONE 3
FW2 C5 O5 SINGLE BEGINWEDGE 4
FW2 C1 C2 SINGLE NONE 5
FW2 C5 C6 SINGLE NONE 6
FW2 C5 C4 SINGLE NONE 7
FW2 C2 C3 SINGLE NONE 8
FW2 C4 C3 SINGLE NONE 9
FW2 C4 O4 SINGLE BEGINDASH 10
FW2 C2 O3 DOUBLE NONE 11
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id FW2
_pdbe_chem_comp_rdkit_properties.exactmw 178.048
_pdbe_chem_comp_rdkit_properties.amw 178.140
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.460
_pdbe_chem_comp_rdkit_properties.tpsa 115.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.256
_pdbe_chem_comp_rdkit_properties.CrippenMR 36.359
_pdbe_chem_comp_rdkit_properties.chi0v 5.449
_pdbe_chem_comp_rdkit_properties.chi1v 2.475
_pdbe_chem_comp_rdkit_properties.chi2v 0.711
_pdbe_chem_comp_rdkit_properties.chi3v 0.711
_pdbe_chem_comp_rdkit_properties.chi4v 0.257
_pdbe_chem_comp_rdkit_properties.chi0n 15.449
_pdbe_chem_comp_rdkit_properties.chi1n 7.108
_pdbe_chem_comp_rdkit_properties.chi2n 0.711
_pdbe_chem_comp_rdkit_properties.chi3n 0.711
_pdbe_chem_comp_rdkit_properties.chi4n 0.257
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.980
_pdbe_chem_comp_rdkit_properties.kappa1 2.761
_pdbe_chem_comp_rdkit_properties.kappa2 4.809
_pdbe_chem_comp_rdkit_properties.kappa3 3.422
_pdbe_chem_comp_rdkit_properties.Phi 1.106
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FW2 UniChem PDBe FW2
FW2 UniChem ZINC ZINC000001532571
FW2 UniChem 'PubChem TPHARMA' 21959881
FW2 UniChem PubChem 15602836
FW2 UniChem Nikkaji J2.452.443D
FW2 UniChem BRENDA 175204
FW2 UniChem BRENDA 26828
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FW2 C1 3.212 -0.324 -0.127 ETKDGv3 1
FW2 C2 2.048 0.011 -0.964 ETKDGv3 2
FW2 C3 0.751 0.468 -0.355 ETKDGv3 3
FW2 C4 -0.214 -0.722 -0.151 ETKDGv3 4
FW2 C5 -1.626 -0.309 0.347 ETKDGv3 5
FW2 C6 -2.432 0.475 -0.709 ETKDGv3 6
FW2 O1 3.142 -0.206 1.258 ETKDGv3 7
FW2 O2 4.280 -0.721 -0.666 ETKDGv3 8
FW2 O4 0.348 -1.669 0.725 ETKDGv3 9
FW2 O5 -1.559 0.389 1.567 ETKDGv3 10
FW2 O6 -3.766 0.613 -0.299 ETKDGv3 11
FW2 H7 0.947 0.981 0.610 ETKDGv3 12
FW2 H8 0.295 1.215 -1.038 ETKDGv3 13
FW2 H1 -0.343 -1.226 -1.134 ETKDGv3 14
FW2 H -2.185 -1.252 0.537 ETKDGv3 15
FW2 H4 -1.985 1.477 -0.898 ETKDGv3 16
FW2 H3 -2.424 -0.083 -1.670 ETKDGv3 17
FW2 H11 3.938 -0.437 1.840 ETKDGv3 18
FW2 H6 0.482 -1.224 1.602 ETKDGv3 19
FW2 H5 -1.248 1.311 1.376 ETKDGv3 20
FW2 H2 -3.786 1.353 0.363 ETKDGv3 21
FW2 O3 2.126 -0.119 -2.216 ETKDGv3 22
#