data_FWD
#
_chem_comp.id FWD
_chem_comp.name "2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H8 F N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms FLUORO-WILLARDIINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-20
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 217.155
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FWD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MQI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FWD N1 N1 N 0 1 N N N N N N 16.346 1.769 15.442 0.264 0.071 -0.490 N1 FWD 1
FWD C2 C2 C 0 1 N N N N N N 16.452 0.472 14.880 0.765 -1.174 -0.393 C2 FWD 2
FWD O2 O2 O 0 1 N N N N N N 16.486 -0.554 15.522 0.036 -2.129 -0.580 O2 FWD 3
FWD N3 N3 N 0 1 N N N N N N 16.511 0.466 13.473 2.061 -1.377 -0.092 N3 FWD 4
FWD C4 C4 C 0 1 N N N N N N 16.480 1.544 12.626 2.883 -0.329 0.118 C4 FWD 5
FWD O4 O4 O 0 1 N N N N N N 16.555 1.443 11.421 4.056 -0.513 0.389 O4 FWD 6
FWD C5 C5 C 0 1 N N N N N N 16.372 2.864 13.328 2.370 0.988 0.019 C5 FWD 7
FWD F5 F5 F 0 1 N N N N N N 16.316 3.972 12.575 3.174 2.054 0.225 F5 FWD 8
FWD C6 C6 C 0 1 N N N N N N 16.289 2.889 14.678 1.065 1.164 -0.284 C6 FWD 9
FWD C7 C7 C 0 1 N N N N N N 16.207 1.899 16.897 -1.150 0.261 -0.825 C7 FWD 10
FWD C8 C8 C 0 1 N N S N N N 14.886 1.381 17.449 -1.977 0.301 0.462 C8 FWD 11
FWD N8 N8 N 0 1 N N N N N N 13.780 2.363 17.184 -1.719 -0.912 1.248 N8 FWD 12
FWD C9 C9 C 0 1 N N N N N N 14.939 1.012 18.929 -3.442 0.373 0.114 C9 FWD 13
FWD O91 O91 O 0 1 N N N N N N 14.130 1.503 19.678 -4.121 -0.626 0.152 O91 FWD 14
FWD O92 O92 O 0 1 N N N N N N 15.907 0.224 19.243 -3.992 1.546 -0.237 O92 FWD 15
FWD H3 H3 H 0 1 N N N N N N 16.584 -0.432 13.040 2.405 -2.282 -0.026 H3 FWD 16
FWD H6 H6 H 0 1 N N N N N N 16.172 3.843 15.170 0.656 2.160 -0.364 H6 FWD 17
FWD H71 H71 H 0 1 N N N N N N 17.024 1.336 17.373 -1.273 1.199 -1.365 H71 FWD 18
FWD H72 H72 H 0 1 N N N N N N 16.295 2.964 17.158 -1.489 -0.566 -1.449 H72 FWD 19
FWD H8 H8 H 0 1 N N N N N N 14.645 0.461 16.897 -1.699 1.179 1.045 H8 FWD 20
FWD H81 H81 H 0 1 N N N N N N 12.922 2.007 17.553 -2.205 -0.880 2.132 H81 FWD 21
FWD H82 H82 H 0 1 N N N N N N 13.996 3.235 17.624 -1.969 -1.740 0.729 H82 FWD 22
FWD H92O H92O H 0 0 N N N N N N 15.901 0.073 20.181 -4.935 1.542 -0.451 H92O FWD 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FWD N1 C2 SING N N 1
FWD N1 C6 SING N N 2
FWD N1 C7 SING N N 3
FWD C2 O2 DOUB N N 4
FWD C2 N3 SING N N 5
FWD N3 C4 SING N N 6
FWD N3 H3 SING N N 7
FWD C4 O4 DOUB N N 8
FWD C4 C5 SING N N 9
FWD C5 F5 SING N N 10
FWD C5 C6 DOUB N N 11
FWD C6 H6 SING N N 12
FWD C7 C8 SING N N 13
FWD C7 H71 SING N N 14
FWD C7 H72 SING N N 15
FWD C8 N8 SING N N 16
FWD C8 C9 SING N N 17
FWD C8 H8 SING N N 18
FWD N8 H81 SING N N 19
FWD N8 H82 SING N N 20
FWD C9 O91 DOUB N N 21
FWD C9 O92 SING N N 22
FWD O92 H92O SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FWD SMILES ACDLabs 12.01 O=C(O)C(N)CN1C=C(F)C(=O)NC1=O
FWD InChI InChI 1.03 InChI=1S/C7H8FN3O4/c8-3-1-11(2-4(9)6(13)14)7(15)10-5(3)12/h1,4H,2,9H2,(H,13,14)(H,10,12,15)/t4-/m0/s1
FWD InChIKey InChI 1.03 DBWPFHJYSTVBCZ-BYPYZUCNSA-N
FWD SMILES_CANONICAL CACTVS 3.385 N[C@@H](CN1C=C(F)C(=O)NC1=O)C(O)=O
FWD SMILES CACTVS 3.385 N[CH](CN1C=C(F)C(=O)NC1=O)C(O)=O
FWD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1=C(C(=O)NC(=O)N1C[C@@H](C(=O)O)N)F
FWD SMILES "OpenEye OEToolkits" 1.7.6 C1=C(C(=O)NC(=O)N1CC(C(=O)O)N)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FWD "SYSTEMATIC NAME" ACDLabs 12.01 3-(5-fluoro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine
FWD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-3-[5-fluoranyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FWD 'Create component' 2002-09-20 RCSB
FWD 'Modify descriptor' 2011-06-04 RCSB
FWD 'Modify aromatic_flag' 2014-07-18 RCSB
FWD 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id FWD
_pdbx_chem_comp_synonyms.name FLUORO-WILLARDIINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id FWD
_pdbe_chem_comp_drugbank_details.drugbank_id DB02966
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Fluoro-Willardiine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id FWD
_pdbe_chem_comp_synonyms.name FLUORO-WILLARDIINE
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id FWD
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02966
_pdbe_chem_comp_drugbank_classification.parent 'L-alpha-amino acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id FWD
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02966
_pdbe_chem_comp_drugbank_targets.name 'Glutamate receptor 2'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P42262
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FWD N1 N 6.404 0.465 1
FWD C2 C 7.702 1.215 2
FWD O2 O 9.002 0.465 3
FWD N3 N 7.702 2.715 4
FWD C4 C 6.404 3.465 5
FWD O4 O 6.404 4.965 6
FWD C5 C 5.104 2.715 7
FWD F5 F 3.805 3.465 8
FWD C6 C 5.104 1.215 9
FWD C7 C 6.404 -1.035 10
FWD C8 C 5.104 -1.785 11
FWD N8 N 3.805 -1.035 12
FWD C9 C 5.104 -3.285 13
FWD O91 O 3.805 -4.035 14
FWD O92 O 6.404 -4.035 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FWD N1 C2 SINGLE NONE 1
FWD N1 C6 SINGLE NONE 2
FWD N1 C7 SINGLE NONE 3
FWD C2 O2 DOUBLE NONE 4
FWD C2 N3 SINGLE NONE 5
FWD N3 C4 SINGLE NONE 6
FWD C4 O4 DOUBLE NONE 7
FWD C4 C5 SINGLE NONE 8
FWD C5 F5 SINGLE NONE 9
FWD C5 C6 DOUBLE NONE 10
FWD C7 C8 SINGLE NONE 11
FWD C8 N8 SINGLE BEGINWEDGE 12
FWD C8 C9 SINGLE NONE 13
FWD C9 O91 DOUBLE NONE 14
FWD C9 O92 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FWD MurckoScaffold S1 scaffold 'O=c1cc[nH]c(=O)[nH]1' InChI=1S/C4H4N2O2/c7-3-1-2-5-4(8)6-3/h1-2H,(H2,5,6,7,8) ISAKRJDGNUQOIC-UHFFFAOYSA-N
FWD peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
FWD pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FWD N1 S1 1
FWD C2 S1 1
FWD O2 S1 1
FWD N3 S1 1
FWD C4 S1 1
FWD O4 S1 1
FWD C5 S1 1
FWD C6 S1 1
FWD O91 F1 1
FWD C9 F1 1
FWD C8 F1 1
FWD N8 F1 1
FWD C5 F2 1
FWD C4 F2 1
FWD N3 F2 1
FWD C2 F2 1
FWD N1 F2 1
FWD C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FWD
_pdbe_chem_comp_rdkit_properties.exactmw 217.050
_pdbe_chem_comp_rdkit_properties.amw 217.156
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 93.460
_pdbe_chem_comp_rdkit_properties.tpsa 118.180
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.113
_pdbe_chem_comp_rdkit_properties.CrippenMR 47.108
_pdbe_chem_comp_rdkit_properties.chi0v 6.853
_pdbe_chem_comp_rdkit_properties.chi1v 3.347
_pdbe_chem_comp_rdkit_properties.chi2v 1.197
_pdbe_chem_comp_rdkit_properties.chi3v 1.197
_pdbe_chem_comp_rdkit_properties.chi4v 0.607
_pdbe_chem_comp_rdkit_properties.chi0n 14.853
_pdbe_chem_comp_rdkit_properties.chi1n 7.097
_pdbe_chem_comp_rdkit_properties.chi2n 1.197
_pdbe_chem_comp_rdkit_properties.chi3n 1.197
_pdbe_chem_comp_rdkit_properties.chi4n 0.607
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.960
_pdbe_chem_comp_rdkit_properties.kappa1 4.270
_pdbe_chem_comp_rdkit_properties.kappa2 4.048
_pdbe_chem_comp_rdkit_properties.kappa3 2.498
_pdbe_chem_comp_rdkit_properties.Phi 1.152
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FWD UniChem ChEMBL CHEMBL123132
FWD UniChem DrugBank DB02966
FWD UniChem PDBe FWD
FWD UniChem 'Guide to Pharmacology' 4070
FWD UniChem ChEBI 42549
FWD UniChem ZINC ZINC000002530708
FWD UniChem eMolecules 6842916
FWD UniChem ACTor 140187-23-1
FWD UniChem BindingDb 50060635
FWD UniChem 'EPA CompTox Dashboard' DTXSID1042609
FWD UniChem MetaboLights MTBLC42549
FWD UniChem ChemicalBook CB7100699
FWD UniChem MedChemExpress HY-16713
FWD UniChem 'Probes And Drugs' PD007494
FWD UniChem Nikkaji J669.185D
FWD UniChem SureChEMBL SCHEMBL5000789
FWD UniChem PubChem 126569
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FWD N1 0.676 0.319 -0.457 ETKDGv3 1
FWD C2 1.495 -0.678 -1.101 ETKDGv3 2
FWD O2 1.015 -1.436 -1.987 ETKDGv3 3
FWD N3 2.867 -0.811 -0.725 ETKDGv3 4
FWD C4 3.399 0.041 0.291 ETKDGv3 5
FWD O4 4.606 -0.064 0.634 ETKDGv3 6
FWD C5 2.531 1.039 0.933 ETKDGv3 7
FWD F5 3.032 1.846 1.902 ETKDGv3 8
FWD C6 1.250 1.155 0.569 ETKDGv3 9
FWD C7 -0.745 0.475 -0.792 ETKDGv3 10
FWD C8 -1.641 -0.229 0.244 ETKDGv3 11
FWD N8 -1.435 -1.679 0.207 ETKDGv3 12
FWD C9 -3.082 0.091 -0.038 ETKDGv3 13
FWD O91 -3.666 -0.422 -1.031 ETKDGv3 14
FWD O92 -3.766 0.982 0.784 ETKDGv3 15
FWD H3 3.473 -1.526 -1.185 ETKDGv3 16
FWD H6 0.633 1.898 1.061 ETKDGv3 17
FWD H71 -0.994 1.559 -0.820 ETKDGv3 18
FWD H72 -0.956 0.078 -1.809 ETKDGv3 19
FWD H8 -1.389 0.151 1.260 ETKDGv3 20
FWD H81 -2.091 -2.123 0.892 ETKDGv3 21
FWD H82 -0.476 -1.885 0.567 ETKDGv3 22
FWD H92O -4.735 1.217 0.602 ETKDGv3 23
#