data_G1D
#
_chem_comp.id G1D
_chem_comp.name Nalpha-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-phenylpropyl}-N-[2-(pyridin-3-yl)ethyl]-D-phenylalaninamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H38 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-05-02
_chem_comp.pdbx_modified_date 2019-03-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 502.648
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G1D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6DAL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G1D C20 C1 C 0 1 N N N N N N -21.435 -18.928 -6.466 -2.248 0.337 -0.837 C20 G1D 1
G1D C25 C2 C 0 1 Y N N N N N -19.560 -22.187 -8.323 -7.025 -0.771 -0.669 C25 G1D 2
G1D C26 C3 C 0 1 Y N N N N N -20.413 -22.274 -9.381 -7.664 -0.470 0.524 C26 G1D 3
G1D C35 C4 C 0 1 Y N N N N N -19.506 -18.683 -11.630 7.470 0.314 -0.308 C35 G1D 4
G1D C36 C5 C 0 1 Y N N N N N -18.592 -19.126 -10.647 6.901 1.569 -0.196 C36 G1D 5
G1D C24 C6 C 0 1 N N N N N N -19.939 -21.915 -6.995 -5.942 0.131 -1.204 C24 G1D 6
G1D C16 C7 C 0 1 Y N N N N N -26.560 -20.328 -4.892 -2.803 2.576 2.582 C16 G1D 7
G1D C17 C8 C 0 1 Y N N N N N -26.072 -19.903 -3.650 -1.671 2.839 3.330 C17 G1D 8
G1D C19 C9 C 0 1 Y N N N N N -24.186 -18.896 -4.771 -0.382 3.004 1.319 C19 G1D 9
G1D C18 C10 C 0 1 Y N N N N N -24.870 -19.189 -3.608 -0.460 3.053 2.698 C18 G1D 10
G1D C28 C11 C 0 1 Y N N N N N -18.581 -22.629 -10.836 -8.970 -2.447 0.229 C28 G1D 11
G1D C34 C12 C 0 1 Y N N N N N -20.368 -17.625 -11.311 6.818 -0.680 -1.013 C34 G1D 12
G1D C33 C13 C 0 1 Y N N N N N -20.307 -17.029 -10.027 5.596 -0.420 -1.604 C33 G1D 13
G1D C32 C14 C 0 1 Y N N N N N -19.393 -17.455 -9.055 5.027 0.835 -1.492 C32 G1D 14
G1D C31 C15 C 0 1 N N N N N N -19.387 -16.817 -7.730 3.695 1.118 -2.138 C31 G1D 15
G1D C30 C16 C 0 1 Y N N N N N -18.182 -22.292 -8.591 -7.391 -1.911 -1.360 C30 G1D 16
G1D C01 C17 C 0 1 N N N N N N -23.233 -11.665 -9.488 3.906 -2.239 2.723 C01 G1D 17
G1D C02 C18 C 0 1 N N N N N N -22.242 -12.863 -9.467 4.260 -2.924 1.402 C02 G1D 18
G1D C03 C19 C 0 1 N N N N N N -20.921 -12.357 -10.088 5.704 -2.587 1.024 C03 G1D 19
G1D C04 C20 C 0 1 N N N N N N -22.876 -13.992 -10.337 4.114 -4.438 1.557 C04 G1D 20
G1D C06 C21 C 0 1 N N N N N N -20.857 -13.319 -7.342 3.371 -1.135 0.095 C06 G1D 21
G1D C09 C22 C 0 1 N N S N N N -20.541 -15.753 -7.518 2.571 0.801 -1.149 C09 G1D 22
G1D C10 C23 C 0 1 N N N N N N -21.442 -16.020 -6.229 1.227 1.206 -1.758 C10 G1D 23
G1D C12 C24 C 0 1 N N R N N N -22.532 -18.131 -7.148 -1.164 1.235 -1.376 C12 G1D 24
G1D C13 C25 C 0 1 N N N N N N -23.897 -18.991 -7.307 -1.426 2.675 -0.932 C13 G1D 25
G1D C14 C26 C 0 1 Y N N N N N -24.649 -19.320 -6.023 -1.512 2.729 0.572 C14 G1D 26
G1D C15 C27 C 0 1 Y N N N N N -25.855 -20.038 -6.065 -2.724 2.520 1.203 C15 G1D 27
G1D C23 C28 C 0 1 N N N N N N -19.574 -20.480 -6.809 -4.586 -0.326 -0.663 C23 G1D 28
G1D C27 C29 C 0 1 Y N N N N N -19.964 -22.503 -10.666 -8.654 -1.328 0.977 C27 G1D 29
G1D C37 C30 C 0 1 Y N N N N N -18.542 -18.511 -9.378 5.680 1.829 -0.788 C37 G1D 30
G1D N08 N1 N 0 1 N N N N N N -19.954 -14.422 -7.458 2.564 -0.635 -0.862 N08 G1D 31
G1D N11 N2 N 0 1 N N N N N N -22.744 -16.806 -6.485 0.139 0.793 -0.861 N11 G1D 32
G1D N22 N3 N 0 1 N N N N N N -20.566 -19.691 -7.315 -3.533 0.550 -1.182 N22 G1D 33
G1D N29 N4 N 0 1 Y N N N N N -17.700 -22.518 -9.797 -8.338 -2.704 -0.899 N29 G1D 34
G1D O05 O1 O 0 1 N N N N N N -22.076 -13.413 -8.039 3.365 -2.455 0.359 O05 G1D 35
G1D O07 O2 O 0 1 N N N N N N -20.605 -12.364 -6.608 4.105 -0.394 0.719 O07 G1D 36
G1D O21 O3 O 0 1 N N N N N N -21.361 -18.868 -5.214 -1.963 -0.580 -0.097 O21 G1D 37
G1D H1 H1 H 0 1 N N N N N N -21.473 -22.160 -9.209 -7.396 0.411 1.087 H1 G1D 38
G1D H2 H2 H 0 1 N N N N N N -19.539 -19.149 -12.604 8.427 0.112 0.150 H2 G1D 39
G1D H3 H3 H 0 1 N N N N N N -17.924 -19.945 -10.870 7.411 2.346 0.354 H3 G1D 40
G1D H4 H4 H 0 1 N N N N N N -21.020 -22.066 -6.857 -5.934 0.083 -2.293 H4 G1D 41
G1D H5 H5 H 0 1 N N N N N N -19.387 -22.555 -6.291 -6.134 1.156 -0.886 H5 G1D 42
G1D H6 H6 H 0 1 N N N N N N -27.485 -20.882 -4.944 -3.749 2.408 3.076 H6 G1D 43
G1D H7 H7 H 0 1 N N N N N N -26.614 -20.122 -2.742 -1.732 2.878 4.408 H7 G1D 44
G1D H8 H8 H 0 1 N N N N N N -23.271 -18.325 -4.714 0.564 3.171 0.826 H8 G1D 45
G1D H9 H9 H 0 1 N N N N N N -24.473 -18.864 -2.657 0.425 3.260 3.283 H9 G1D 46
G1D H10 H10 H 0 1 N N N N N N -18.195 -22.821 -11.826 -9.740 -3.120 0.575 H10 G1D 47
G1D H11 H11 H 0 1 N N N N N N -21.077 -17.265 -12.042 7.262 -1.661 -1.100 H11 G1D 48
G1D H12 H12 H 0 1 N N N N N N -20.985 -16.222 -9.791 5.086 -1.197 -2.155 H12 G1D 49
G1D H13 H13 H 0 1 N N N N N N -19.498 -17.603 -6.968 3.645 2.170 -2.420 H13 G1D 50
G1D H14 H14 H 0 1 N N N N N N -18.420 -16.309 -7.596 3.582 0.498 -3.027 H14 G1D 51
G1D H15 H15 H 0 1 N N N N N N -17.488 -22.182 -7.771 -6.895 -2.155 -2.288 H15 G1D 52
G1D H16 H16 H 0 1 N N N N N N -22.825 -10.841 -8.884 2.877 -2.478 2.992 H16 G1D 53
G1D H17 H17 H 0 1 N N N N N N -23.375 -11.325 -10.524 4.578 -2.590 3.506 H17 G1D 54
G1D H18 H18 H 0 1 N N N N N N -24.200 -11.982 -9.070 4.010 -1.159 2.612 H18 G1D 55
G1D H19 H19 H 0 1 N N N N N N -20.498 -11.563 -9.455 6.376 -2.938 1.807 H19 G1D 56
G1D H20 H20 H 0 1 N N N N N N -20.206 -13.190 -10.158 5.956 -3.075 0.082 H20 G1D 57
G1D H21 H21 H 0 1 N N N N N N -21.118 -11.957 -11.094 5.808 -1.507 0.913 H21 G1D 58
G1D H22 H22 H 0 1 N N N N N N -23.813 -14.332 -9.872 3.085 -4.679 1.827 H22 G1D 59
G1D H23 H23 H 0 1 N N N N N N -23.087 -13.604 -11.344 4.366 -4.926 0.616 H23 G1D 60
G1D H24 H24 H 0 1 N N N N N N -22.175 -14.837 -10.409 4.786 -4.790 2.340 H24 G1D 61
G1D H25 H25 H 0 1 N N N N N N -21.203 -15.810 -8.394 2.733 1.356 -0.225 H25 G1D 62
G1D H26 H26 H 0 1 N N N N N N -20.839 -16.588 -5.505 1.199 2.288 -1.889 H26 G1D 63
G1D H27 H27 H 0 1 N N N N N N -21.713 -15.046 -5.796 1.105 0.719 -2.725 H27 G1D 64
G1D H28 H28 H 0 1 N N N N N N -22.187 -17.927 -8.173 -1.160 1.186 -2.465 H28 G1D 65
G1D H29 H29 H 0 1 N N N N N N -24.578 -18.420 -7.956 -0.612 3.315 -1.272 H29 G1D 66
G1D H30 H30 H 0 1 N N N N N N -23.637 -19.942 -7.795 -2.366 3.023 -1.361 H30 G1D 67
G1D H31 H31 H 0 1 N N N N N N -26.244 -20.371 -7.016 -3.607 2.306 0.620 H31 G1D 68
G1D H32 H32 H 0 1 N N N N N N -18.632 -20.269 -7.337 -4.594 -0.278 0.426 H32 G1D 69
G1D H33 H33 H 0 1 N N N N N N -19.448 -20.269 -5.737 -4.395 -1.351 -0.980 H33 G1D 70
G1D H34 H34 H 0 1 N N N N N N -20.647 -22.581 -11.499 -9.175 -1.123 1.900 H34 G1D 71
G1D H35 H35 H 0 1 N N N N N N -17.832 -18.864 -8.644 5.235 2.809 -0.700 H35 G1D 72
G1D H36 H36 H 0 1 N N N N N N -18.964 -14.285 -7.496 1.979 -1.227 -1.360 H36 G1D 73
G1D H37 H37 H 0 1 N N N N N N -23.336 -16.252 -7.070 0.293 1.136 0.075 H37 G1D 74
G1D H39 H39 H 0 1 N N N N N N -20.691 -19.643 -8.306 -3.761 1.284 -1.774 H39 G1D 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G1D C35 C34 DOUB Y N 1
G1D C35 C36 SING Y N 2
G1D C34 C33 SING Y N 3
G1D C28 C27 DOUB Y N 4
G1D C28 N29 SING Y N 5
G1D C27 C26 SING Y N 6
G1D C36 C37 DOUB Y N 7
G1D C04 C02 SING N N 8
G1D C03 C02 SING N N 9
G1D C33 C32 DOUB Y N 10
G1D N29 C30 DOUB Y N 11
G1D C01 C02 SING N N 12
G1D C02 O05 SING N N 13
G1D C26 C25 DOUB Y N 14
G1D C37 C32 SING Y N 15
G1D C32 C31 SING N N 16
G1D C30 C25 SING Y N 17
G1D C25 C24 SING N N 18
G1D O05 C06 SING N N 19
G1D C31 C09 SING N N 20
G1D C09 N08 SING N N 21
G1D C09 C10 SING N N 22
G1D N08 C06 SING N N 23
G1D C06 O07 DOUB N N 24
G1D N22 C23 SING N N 25
G1D N22 C20 SING N N 26
G1D C13 C12 SING N N 27
G1D C13 C14 SING N N 28
G1D C12 N11 SING N N 29
G1D C12 C20 SING N N 30
G1D C24 C23 SING N N 31
G1D N11 C10 SING N N 32
G1D C20 O21 DOUB N N 33
G1D C15 C14 DOUB Y N 34
G1D C15 C16 SING Y N 35
G1D C14 C19 SING Y N 36
G1D C16 C17 DOUB Y N 37
G1D C19 C18 DOUB Y N 38
G1D C17 C18 SING Y N 39
G1D C26 H1 SING N N 40
G1D C35 H2 SING N N 41
G1D C36 H3 SING N N 42
G1D C24 H4 SING N N 43
G1D C24 H5 SING N N 44
G1D C16 H6 SING N N 45
G1D C17 H7 SING N N 46
G1D C19 H8 SING N N 47
G1D C18 H9 SING N N 48
G1D C28 H10 SING N N 49
G1D C34 H11 SING N N 50
G1D C33 H12 SING N N 51
G1D C31 H13 SING N N 52
G1D C31 H14 SING N N 53
G1D C30 H15 SING N N 54
G1D C01 H16 SING N N 55
G1D C01 H17 SING N N 56
G1D C01 H18 SING N N 57
G1D C03 H19 SING N N 58
G1D C03 H20 SING N N 59
G1D C03 H21 SING N N 60
G1D C04 H22 SING N N 61
G1D C04 H23 SING N N 62
G1D C04 H24 SING N N 63
G1D C09 H25 SING N N 64
G1D C10 H26 SING N N 65
G1D C10 H27 SING N N 66
G1D C12 H28 SING N N 67
G1D C13 H29 SING N N 68
G1D C13 H30 SING N N 69
G1D C15 H31 SING N N 70
G1D C23 H32 SING N N 71
G1D C23 H33 SING N N 72
G1D C27 H34 SING N N 73
G1D C37 H35 SING N N 74
G1D N08 H36 SING N N 75
G1D N11 H37 SING N N 76
G1D N22 H39 SING N N 77
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G1D SMILES ACDLabs 12.01 C(=O)(C(NCC(Cc1ccccc1)NC(=O)OC(C)(C)C)Cc2ccccc2)NCCc3cccnc3
G1D InChI InChI 1.03 InChI=1S/C30H38N4O3/c1-30(2,3)37-29(36)34-26(19-23-11-6-4-7-12-23)22-33-27(20-24-13-8-5-9-14-24)28(35)32-18-16-25-15-10-17-31-21-25/h4-15,17,21,26-27,33H,16,18-20,22H2,1-3H3,(H,32,35)(H,34,36)/t26-,27+/m0/s1
G1D InChIKey InChI 1.03 YWYQRVKPXANWKY-RRPNLBNLSA-N
G1D SMILES_CANONICAL CACTVS 3.385 CC(C)(C)OC(=O)N[C@H](CN[C@H](Cc1ccccc1)C(=O)NCCc2cccnc2)Cc3ccccc3
G1D SMILES CACTVS 3.385 CC(C)(C)OC(=O)N[CH](CN[CH](Cc1ccccc1)C(=O)NCCc2cccnc2)Cc3ccccc3
G1D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)CN[C@H](Cc2ccccc2)C(=O)NCCc3cccnc3
G1D SMILES "OpenEye OEToolkits" 2.0.6 CC(C)(C)OC(=O)NC(Cc1ccccc1)CNC(Cc2ccccc2)C(=O)NCCc3cccnc3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G1D "SYSTEMATIC NAME" ACDLabs 12.01 Nalpha-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-phenylpropyl}-N-[2-(pyridin-3-yl)ethyl]-D-phenylalaninamide
G1D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{tert}-butyl ~{N}-[(2~{S})-1-[[(2~{R})-1-oxidanylidene-3-phenyl-1-(2-pyridin-3-ylethylamino)propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G1D 'Create component' 2018-05-02 RCSB
G1D 'Initial release' 2019-04-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G1D C20 C 5.598 -0.375 1
G1D C25 C 8.196 4.125 2
G1D C26 C 6.897 4.875 3
G1D C35 C 13.392 -6.375 4
G1D C36 C 12.093 -7.125 5
G1D C24 C 8.196 2.625 6
G1D C16 C 3.000 -6.375 7
G1D C17 C 4.299 -7.125 8
G1D C19 C 5.598 -4.875 9
G1D C18 C 5.598 -6.375 10
G1D C28 C 8.196 7.125 11
G1D C34 C 13.392 -4.875 12
G1D C33 C 12.093 -4.125 13
G1D C32 C 10.794 -4.875 14
G1D C31 C 9.495 -4.125 15
G1D C30 C 9.495 4.875 16
G1D C01 C 10.593 1.875 17
G1D C02 C 12.093 1.875 18
G1D C03 C 12.093 3.375 19
G1D C04 C 13.593 1.875 20
G1D C06 C 10.794 -0.375 21
G1D C09 C 9.495 -2.625 22
G1D C10 C 8.196 -1.875 23
G1D C12 C 5.598 -1.875 24
G1D C13 C 4.299 -2.625 25
G1D C14 C 4.299 -4.125 26
G1D C15 C 3.000 -4.875 27
G1D C23 C 6.897 1.875 28
G1D C27 C 6.897 6.375 29
G1D C37 C 10.794 -6.375 30
G1D N08 N 10.794 -1.875 31
G1D N11 N 6.897 -2.625 32
G1D N22 N 6.897 0.375 33
G1D N29 N 9.495 6.375 34
G1D O05 O 12.093 0.375 35
G1D O07 O 9.495 0.375 36
G1D O21 O 4.299 0.375 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G1D C35 C34 DOUBLE NONE 1
G1D C35 C36 SINGLE NONE 2
G1D C34 C33 SINGLE NONE 3
G1D C28 C27 SINGLE NONE 4
G1D C28 N29 DOUBLE NONE 5
G1D C27 C26 DOUBLE NONE 6
G1D C36 C37 DOUBLE NONE 7
G1D C04 C02 SINGLE NONE 8
G1D C03 C02 SINGLE NONE 9
G1D C33 C32 DOUBLE NONE 10
G1D N29 C30 SINGLE NONE 11
G1D C01 C02 SINGLE NONE 12
G1D C02 O05 SINGLE NONE 13
G1D C26 C25 SINGLE NONE 14
G1D C37 C32 SINGLE NONE 15
G1D C32 C31 SINGLE NONE 16
G1D C30 C25 DOUBLE NONE 17
G1D C25 C24 SINGLE NONE 18
G1D O05 C06 SINGLE NONE 19
G1D C09 C31 SINGLE BEGINWEDGE 20
G1D C09 N08 SINGLE NONE 21
G1D C09 C10 SINGLE NONE 22
G1D N08 C06 SINGLE NONE 23
G1D C06 O07 DOUBLE NONE 24
G1D N22 C23 SINGLE NONE 25
G1D N22 C20 SINGLE NONE 26
G1D C12 C13 SINGLE BEGINDASH 27
G1D C13 C14 SINGLE NONE 28
G1D C12 N11 SINGLE NONE 29
G1D C12 C20 SINGLE NONE 30
G1D C24 C23 SINGLE NONE 31
G1D N11 C10 SINGLE NONE 32
G1D C20 O21 DOUBLE NONE 33
G1D C15 C14 SINGLE NONE 34
G1D C15 C16 DOUBLE NONE 35
G1D C14 C19 DOUBLE NONE 36
G1D C16 C17 SINGLE NONE 37
G1D C19 C18 SINGLE NONE 38
G1D C17 C18 DOUBLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G1D MurckoScaffold S1 scaffold 'O=C(NCCc1cccnc1)[C@@H](Cc1ccccc1)NCCCc1ccccc1' InChI=1S/C25H29N3O/c29-25(28-18-15-23-14-7-16-26-20-23)24(19-22-11-5-2-6-12-22)27-17-8-13-21-9-3-1-4-10-21/h1-7,9-12,14,16,20,24,27H,8,13,15,17-19H2,(H,28,29)/t24-/m1/s1 PVNKTYWEQPCGRM-XMMPIXPASA-N
G1D amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G1D peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
G1D phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
G1D pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G1D C20 S1 1
G1D C25 S1 1
G1D C26 S1 1
G1D C35 S1 1
G1D C36 S1 1
G1D C24 S1 1
G1D C16 S1 1
G1D C17 S1 1
G1D C19 S1 1
G1D C18 S1 1
G1D C28 S1 1
G1D C34 S1 1
G1D C33 S1 1
G1D C32 S1 1
G1D C31 S1 1
G1D C30 S1 1
G1D C09 S1 1
G1D C10 S1 1
G1D C12 S1 1
G1D C13 S1 1
G1D C14 S1 1
G1D C15 S1 1
G1D C23 S1 1
G1D C27 S1 1
G1D C37 S1 1
G1D N11 S1 1
G1D N22 S1 1
G1D N29 S1 1
G1D O21 S1 1
G1D N22 F1 1
G1D C20 F1 1
G1D O21 F1 1
G1D C12 F1 1
G1D O21 F2 1
G1D C20 F2 1
G1D C12 F2 1
G1D N11 F2 1
G1D C35 F3 1
G1D C34 F3 1
G1D C33 F3 1
G1D C32 F3 1
G1D C37 F3 1
G1D C36 F3 1
G1D C16 F3 2
G1D C15 F3 2
G1D C14 F3 2
G1D C19 F3 2
G1D C18 F3 2
G1D C17 F3 2
G1D C28 F4 1
G1D C27 F4 1
G1D C26 F4 1
G1D C25 F4 1
G1D C30 F4 1
G1D N29 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G1D
_pdbe_chem_comp_rdkit_properties.exactmw 502.294
_pdbe_chem_comp_rdkit_properties.amw 502.659
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.367
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 273.159
_pdbe_chem_comp_rdkit_properties.tpsa 92.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.913
_pdbe_chem_comp_rdkit_properties.CrippenMR 145.393
_pdbe_chem_comp_rdkit_properties.chi0v 18.014
_pdbe_chem_comp_rdkit_properties.chi1v 9.355
_pdbe_chem_comp_rdkit_properties.chi2v 3.212
_pdbe_chem_comp_rdkit_properties.chi3v 3.212
_pdbe_chem_comp_rdkit_properties.chi4v 1.903
_pdbe_chem_comp_rdkit_properties.chi0n 56.014
_pdbe_chem_comp_rdkit_properties.chi1n 28.197
_pdbe_chem_comp_rdkit_properties.chi2n 3.212
_pdbe_chem_comp_rdkit_properties.chi3n 3.212
_pdbe_chem_comp_rdkit_properties.chi4n 1.903
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.710
_pdbe_chem_comp_rdkit_properties.kappa1 6.462
_pdbe_chem_comp_rdkit_properties.kappa2 14.136
_pdbe_chem_comp_rdkit_properties.kappa3 10.835
_pdbe_chem_comp_rdkit_properties.Phi 2.469
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G1D UniChem PDBe G1D
G1D UniChem PubChem 137628299
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G1D C20 -1.237 -1.092 -0.676 ETKDGv3 1
G1D C25 -5.203 0.853 0.509 ETKDGv3 2
G1D C26 -4.913 2.306 0.478 ETKDGv3 3
G1D C35 1.487 0.359 4.802 ETKDGv3 4
G1D C36 1.199 -1.039 4.425 ETKDGv3 5
G1D C24 -4.243 -0.121 -0.117 ETKDGv3 6
G1D C16 -4.599 -2.102 -3.286 ETKDGv3 7
G1D C17 -4.984 -3.503 -3.019 ETKDGv3 8
G1D C19 -2.622 -4.015 -2.676 ETKDGv3 9
G1D C18 -4.045 -4.412 -2.731 ETKDGv3 10
G1D C28 -6.954 2.652 1.746 ETKDGv3 11
G1D C34 2.424 1.051 4.142 ETKDGv3 12
G1D C33 3.170 0.418 3.034 ETKDGv3 13
G1D C32 2.912 -0.856 2.682 ETKDGv3 14
G1D C31 3.643 -1.502 1.529 ETKDGv3 15
G1D C30 -6.303 0.426 1.153 ETKDGv3 16
G1D C01 5.527 3.100 -2.183 ETKDGv3 17
G1D C02 4.867 3.362 -0.816 ETKDGv3 18
G1D C03 5.919 3.339 0.310 ETKDGv3 19
G1D C04 4.200 4.746 -0.844 ETKDGv3 20
G1D C06 4.005 1.013 -0.430 ETKDGv3 21
G1D C09 2.973 -1.236 0.162 ETKDGv3 22
G1D C10 1.587 -1.900 0.067 ETKDGv3 23
G1D C12 -0.378 -2.137 -1.347 ETKDGv3 24
G1D C13 -0.820 -2.315 -2.816 ETKDGv3 25
G1D C14 -2.263 -2.743 -2.924 ETKDGv3 26
G1D C15 -3.311 -1.740 -3.241 ETKDGv3 27
G1D C23 -3.159 -0.529 0.884 ETKDGv3 28
G1D C27 -5.750 3.166 1.067 ETKDGv3 29
G1D C37 1.875 -1.617 3.423 ETKDGv3 30
G1D N08 2.871 0.206 -0.096 ETKDGv3 31
G1D N11 1.039 -1.735 -1.288 ETKDGv3 32
G1D N22 -2.238 -1.485 0.274 ETKDGv3 33
G1D N29 -7.190 1.373 1.775 ETKDGv3 34
G1D O05 3.834 2.399 -0.559 ETKDGv3 35
G1D O07 5.134 0.478 -0.599 ETKDGv3 36
G1D O21 -1.085 0.125 -0.973 ETKDGv3 37
G1D H1 -4.023 2.674 -0.018 ETKDGv3 38
G1D H2 0.939 0.822 5.612 ETKDGv3 39
G1D H3 0.440 -1.595 4.960 ETKDGv3 40
G1D H4 -3.776 0.348 -1.009 ETKDGv3 41
G1D H5 -4.786 -1.027 -0.464 ETKDGv3 42
G1D H6 -5.362 -1.368 -3.511 ETKDGv3 43
G1D H7 -6.026 -3.791 -3.056 ETKDGv3 44
G1D H8 -1.877 -4.760 -2.423 ETKDGv3 45
G1D H9 -4.325 -5.438 -2.533 ETKDGv3 46
G1D H10 -7.641 3.338 2.224 ETKDGv3 47
G1D H11 2.637 2.076 4.417 ETKDGv3 48
G1D H12 3.920 0.997 2.510 ETKDGv3 49
G1D H13 4.692 -1.137 1.503 ETKDGv3 50
G1D H14 3.706 -2.599 1.699 ETKDGv3 51
G1D H15 -6.532 -0.630 1.214 ETKDGv3 52
G1D H16 6.232 3.919 -2.439 ETKDGv3 53
G1D H17 6.102 2.151 -2.180 ETKDGv3 54
G1D H18 4.752 3.037 -2.976 ETKDGv3 55
G1D H19 6.488 2.387 0.313 ETKDGv3 56
G1D H20 5.424 3.453 1.299 ETKDGv3 57
G1D H21 6.648 4.168 0.180 ETKDGv3 58
G1D H22 4.948 5.545 -1.038 ETKDGv3 59
G1D H23 3.704 4.954 0.128 ETKDGv3 60
G1D H24 3.427 4.785 -1.641 ETKDGv3 61
G1D H25 3.614 -1.696 -0.623 ETKDGv3 62
G1D H26 1.674 -2.983 0.310 ETKDGv3 63
G1D H27 0.912 -1.430 0.816 ETKDGv3 64
G1D H28 -0.508 -3.118 -0.833 ETKDGv3 65
G1D H29 -0.662 -1.365 -3.372 ETKDGv3 66
G1D H30 -0.181 -3.083 -3.305 ETKDGv3 67
G1D H31 -3.039 -0.709 -3.429 ETKDGv3 68
G1D H32 -3.640 -1.003 1.768 ETKDGv3 69
G1D H33 -2.597 0.363 1.238 ETKDGv3 70
G1D H34 -5.547 4.229 1.048 ETKDGv3 71
G1D H35 1.656 -2.642 3.152 ETKDGv3 72
G1D H36 1.941 0.679 -0.028 ETKDGv3 73
G1D H37 1.593 -2.363 -1.919 ETKDGv3 74
G1D H39 -2.299 -2.486 0.567 ETKDGv3 75
#