data_G1T
#
_chem_comp.id G1T
_chem_comp.name 8-(oxidanylamino)-2-piperidin-1-yl-6-(trifluoromethyl)-1,3-benzothiazin-4-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H14 F3 N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-08-22
_chem_comp.pdbx_modified_date 2018-09-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 345.340
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G1T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HFW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G1T N1 N1 N 0 1 N N N N N N 13.152 -21.378 36.121 -1.709 1.486 -0.250 N1 G1T 1
G1T N3 N2 N 0 1 N N N N N N 15.997 -17.723 38.743 1.183 -2.922 -0.059 N3 G1T 2
G1T C4 C1 C 0 1 Y N N N N N 15.019 -19.733 35.733 0.693 0.762 -0.095 C4 G1T 3
G1T C5 C2 C 0 1 Y N N N N N 15.073 -19.225 37.027 0.442 -0.625 -0.110 C5 G1T 4
G1T C6 C3 C 0 1 Y N N N N N 15.999 -18.217 37.381 1.463 -1.552 -0.043 C6 G1T 5
G1T C7 C4 C 0 1 N N N N N N 14.084 -20.801 35.270 -0.418 1.710 -0.168 C7 G1T 6
G1T C8 C5 C 0 1 N N N N N N 13.046 -21.051 37.385 -2.322 0.309 -0.289 C8 G1T 7
G1T C10 C6 C 0 1 N N N N N N 12.059 -24.178 38.165 -5.382 -1.202 0.686 C10 G1T 8
G1T C13 C7 C 0 1 N N N N N N 11.972 -21.677 39.620 -4.535 1.388 -0.431 C13 G1T 9
G1T F3 F1 F 0 1 N N N N N N 17.186 -16.727 33.353 5.321 -0.368 0.207 F3 G1T 10
G1T C14 C8 C 0 1 N N N N N N 17.763 -17.737 34.046 4.465 0.737 0.148 C14 G1T 11
G1T F1 F2 F 0 1 N N N N N N 18.942 -17.285 34.540 4.626 1.512 1.302 F1 G1T 12
G1T F2 F3 F 0 1 N N N N N N 18.080 -18.681 33.128 4.775 1.507 -0.978 F2 G1T 13
G1T C2 C9 C 0 1 Y N N N N N 16.851 -18.218 35.130 3.038 0.263 0.056 C2 G1T 14
G1T C3 C10 C 0 1 Y N N N N N 15.924 -19.216 34.781 2.023 1.190 -0.010 C3 G1T 15
G1T O1 O1 O 0 1 N N N N N N 14.111 -21.190 34.105 -0.097 2.886 -0.148 O1 G1T 16
G1T S S1 S 0 1 N N N N N N 13.988 -19.838 38.257 -1.272 -1.071 -0.220 S G1T 17
G1T O2 O2 O 0 1 N N N N N N 15.097 -16.926 39.078 2.240 -3.861 0.010 O2 G1T 18
G1T C1 C11 C 0 1 Y N N N N N 16.901 -17.702 36.429 2.774 -1.099 0.042 C1 G1T 19
G1T N2 N3 N 0 1 N N N N N N 12.038 -21.698 38.143 -3.683 0.192 -0.376 N2 G1T 20
G1T C12 C12 C 0 1 N N N N N N 12.653 -22.892 40.245 -5.595 1.289 0.671 C12 G1T 21
G1T C11 C13 C 0 1 N N N N N N 12.056 -24.180 39.690 -6.355 -0.031 0.526 C11 G1T 22
G1T C9 C14 C 0 1 N N N N N N 11.402 -22.920 37.604 -4.320 -1.132 -0.416 C9 G1T 23
G1T H1 H1 H 0 1 N N N N N N 15.930 -18.517 39.347 0.265 -3.228 -0.119 H1 G1T 24
G1T H2 H2 H 0 1 N N N N N N 11.508 -25.059 37.806 -4.899 -1.143 1.661 H2 G1T 25
G1T H3 H3 H 0 1 N N N N N N 13.099 -24.226 37.810 -5.928 -2.142 0.606 H3 G1T 26
G1T H4 H4 H 0 1 N N N N N N 12.469 -20.766 39.984 -3.926 2.278 -0.274 H4 G1T 27
G1T H5 H5 H 0 1 N N N N N N 10.916 -21.666 39.927 -5.024 1.446 -1.404 H5 G1T 28
G1T H6 H6 H 0 1 N N N N N N 15.904 -19.593 33.769 2.253 2.245 0.002 H6 G1T 29
G1T H7 H7 H 0 1 N N N N N N 15.212 -16.683 39.989 1.949 -4.783 -0.007 H7 G1T 30
G1T H8 H8 H 0 1 N N N N N N 17.610 -16.932 36.694 3.588 -1.807 0.094 H8 G1T 31
G1T H9 H9 H 0 1 N N N N N N 13.728 -22.863 40.015 -5.110 1.325 1.646 H9 G1T 32
G1T H10 H10 H 0 1 N N N N N N 12.510 -22.867 41.335 -6.292 2.123 0.581 H10 G1T 33
G1T H11 H11 H 0 1 N N N N N N 11.020 -24.278 40.046 -6.819 -0.076 -0.459 H11 G1T 34
G1T H12 H12 H 0 1 N N N N N N 12.649 -25.034 40.049 -7.126 -0.092 1.294 H12 G1T 35
G1T H13 H13 H 0 1 N N N N N N 10.336 -22.920 37.877 -3.569 -1.904 -0.249 H13 G1T 36
G1T H14 H14 H 0 1 N N N N N N 11.500 -22.922 36.508 -4.791 -1.281 -1.388 H14 G1T 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G1T F2 C14 SING N N 1
G1T F3 C14 SING N N 2
G1T C14 F1 SING N N 3
G1T C14 C2 SING N N 4
G1T O1 C7 DOUB N N 5
G1T C3 C2 DOUB Y N 6
G1T C3 C4 SING Y N 7
G1T C2 C1 SING Y N 8
G1T C7 C4 SING N N 9
G1T C7 N1 SING N N 10
G1T C4 C5 DOUB Y N 11
G1T N1 C8 DOUB N N 12
G1T C1 C6 DOUB Y N 13
G1T C5 C6 SING Y N 14
G1T C5 S SING N N 15
G1T C6 N3 SING N N 16
G1T C8 N2 SING N N 17
G1T C8 S SING N N 18
G1T C9 N2 SING N N 19
G1T C9 C10 SING N N 20
G1T N2 C13 SING N N 21
G1T C10 C11 SING N N 22
G1T N3 O2 SING N N 23
G1T C13 C12 SING N N 24
G1T C11 C12 SING N N 25
G1T N3 H1 SING N N 26
G1T C10 H2 SING N N 27
G1T C10 H3 SING N N 28
G1T C13 H4 SING N N 29
G1T C13 H5 SING N N 30
G1T C3 H6 SING N N 31
G1T O2 H7 SING N N 32
G1T C1 H8 SING N N 33
G1T C12 H9 SING N N 34
G1T C12 H10 SING N N 35
G1T C11 H11 SING N N 36
G1T C11 H12 SING N N 37
G1T C9 H13 SING N N 38
G1T C9 H14 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G1T InChI InChI 1.03 InChI=1S/C14H14F3N3O2S/c15-14(16,17)8-6-9-11(10(7-8)19-22)23-13(18-12(9)21)20-4-2-1-3-5-20/h6-7,19,22H,1-5H2
G1T InChIKey InChI 1.03 NFTFZGDVDRYPDT-UHFFFAOYSA-N
G1T SMILES_CANONICAL CACTVS 3.385 ONc1cc(cc2C(=O)N=C(Sc12)N3CCCCC3)C(F)(F)F
G1T SMILES CACTVS 3.385 ONc1cc(cc2C(=O)N=C(Sc12)N3CCCCC3)C(F)(F)F
G1T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1c(cc(c2c1C(=O)N=C(S2)N3CCCCC3)NO)C(F)(F)F
G1T SMILES "OpenEye OEToolkits" 2.0.6 c1c(cc(c2c1C(=O)N=C(S2)N3CCCCC3)NO)C(F)(F)F
#
_pdbx_chem_comp_identifier.comp_id G1T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 8-(oxidanylamino)-2-piperidin-1-yl-6-(trifluoromethyl)-1,3-benzothiazin-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G1T 'Create component' 2018-08-22 EBI
G1T 'Initial release' 2018-09-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G1T N1 N 10.896 1.595 1
G1T N3 N 6.897 -2.186 2
G1T C4 C 8.196 1.564 3
G1T C5 C 8.196 0.064 4
G1T C6 C 6.897 -0.686 5
G1T C7 C 9.537 2.366 6
G1T C8 C 10.896 0.033 7
G1T C10 C 13.483 -2.977 8
G1T C13 C 13.494 0.023 9
G1T F3 F 3.549 1.015 10
G1T C14 C 4.299 2.314 11
G1T F1 F 5.049 3.613 12
G1T F2 F 3.000 3.064 13
G1T C2 C 5.598 1.564 14
G1T C3 C 6.897 2.314 15
G1T O1 O 9.520 3.866 16
G1T S S 9.537 -0.738 17
G1T O2 O 5.598 -2.936 18
G1T C1 C 5.598 0.064 19
G1T N2 N 12.192 -0.722 20
G1T C12 C 14.790 -0.732 21
G1T C11 C 14.785 -2.232 22
G1T C9 C 12.187 -2.222 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G1T F2 C14 SINGLE NONE 1
G1T F3 C14 SINGLE NONE 2
G1T C14 F1 SINGLE NONE 3
G1T C14 C2 SINGLE NONE 4
G1T O1 C7 DOUBLE NONE 5
G1T C3 C2 SINGLE NONE 6
G1T C3 C4 DOUBLE NONE 7
G1T C2 C1 DOUBLE NONE 8
G1T C7 C4 SINGLE NONE 9
G1T C7 N1 SINGLE NONE 10
G1T C4 C5 SINGLE NONE 11
G1T N1 C8 DOUBLE NONE 12
G1T C1 C6 SINGLE NONE 13
G1T C5 C6 DOUBLE NONE 14
G1T C5 S SINGLE NONE 15
G1T C6 N3 SINGLE NONE 16
G1T C8 N2 SINGLE NONE 17
G1T C8 S SINGLE NONE 18
G1T C9 N2 SINGLE NONE 19
G1T C9 C10 SINGLE NONE 20
G1T N2 C13 SINGLE NONE 21
G1T C10 C11 SINGLE NONE 22
G1T N3 O2 SINGLE NONE 23
G1T C13 C12 SINGLE NONE 24
G1T C11 C12 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G1T MurckoScaffold S1 scaffold O=c1nc(N2CCCCC2)sc2ccccc12 InChI=1S/C13H14N2OS/c16-12-10-6-2-3-7-11(10)17-13(14-12)15-8-4-1-5-9-15/h2-3,6-7H,1,4-5,8-9H2 VQEWQAXORJWVTM-UHFFFAOYSA-N
G1T phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G1T N1 S1 1
G1T C4 S1 1
G1T C5 S1 1
G1T C6 S1 1
G1T C7 S1 1
G1T C8 S1 1
G1T C10 S1 1
G1T C13 S1 1
G1T C2 S1 1
G1T C3 S1 1
G1T O1 S1 1
G1T S S1 1
G1T C1 S1 1
G1T N2 S1 1
G1T C12 S1 1
G1T C11 S1 1
G1T C9 S1 1
G1T C4 F1 1
G1T C3 F1 1
G1T C2 F1 1
G1T C1 F1 1
G1T C6 F1 1
G1T C5 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G1T
_pdbe_chem_comp_rdkit_properties.exactmw 345.076
_pdbe_chem_comp_rdkit_properties.amw 345.346
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 152.698
_pdbe_chem_comp_rdkit_properties.tpsa 65.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.122
_pdbe_chem_comp_rdkit_properties.CrippenMR 78.353
_pdbe_chem_comp_rdkit_properties.chi0v 11.517
_pdbe_chem_comp_rdkit_properties.chi1v 6.520
_pdbe_chem_comp_rdkit_properties.chi2v 3.624
_pdbe_chem_comp_rdkit_properties.chi3v 3.624
_pdbe_chem_comp_rdkit_properties.chi4v 2.557
_pdbe_chem_comp_rdkit_properties.chi0n 24.700
_pdbe_chem_comp_rdkit_properties.chi1n 12.559
_pdbe_chem_comp_rdkit_properties.chi2n 2.566
_pdbe_chem_comp_rdkit_properties.chi3n 2.566
_pdbe_chem_comp_rdkit_properties.chi4n 1.638
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.870
_pdbe_chem_comp_rdkit_properties.kappa1 6.211
_pdbe_chem_comp_rdkit_properties.kappa2 5.969
_pdbe_chem_comp_rdkit_properties.kappa3 3.109
_pdbe_chem_comp_rdkit_properties.Phi 1.612
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G1T UniChem PDBe G1T
G1T UniChem PubChem 134814274
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G1T N1 -0.300 0.723 1.645 ETKDGv3 1
G1T N3 2.276 -0.709 -2.848 ETKDGv3 2
G1T C4 2.112 0.790 0.650 ETKDGv3 3
G1T C5 1.727 0.155 -0.638 ETKDGv3 4
G1T C6 2.641 -0.087 -1.602 ETKDGv3 5
G1T C7 1.105 1.047 1.740 ETKDGv3 6
G1T C8 -0.928 0.170 0.648 ETKDGv3 7
G1T C10 -4.612 -0.313 -0.274 ETKDGv3 8
G1T C13 -3.065 0.053 2.005 ETKDGv3 9
G1T F3 5.977 2.244 0.982 ETKDGv3 10
G1T C14 5.866 1.249 0.027 ETKDGv3 11
G1T F1 6.466 1.699 -1.137 ETKDGv3 12
G1T F2 6.534 0.123 0.472 ETKDGv3 13
G1T C2 4.419 0.903 -0.222 ETKDGv3 14
G1T C3 3.402 1.135 0.834 ETKDGv3 15
G1T O1 1.497 1.581 2.812 ETKDGv3 16
G1T S 0.006 -0.268 -0.811 ETKDGv3 17
G1T O2 3.206 -0.950 -3.803 ETKDGv3 18
G1T C1 4.053 0.298 -1.363 ETKDGv3 19
G1T N2 -2.347 -0.083 0.727 ETKDGv3 20
G1T C12 -4.109 -1.060 2.143 ETKDGv3 21
G1T C11 -5.055 -1.162 0.927 ETKDGv3 22
G1T C9 -3.098 -0.400 -0.499 ETKDGv3 23
G1T H1 1.287 -0.968 -3.057 ETKDGv3 24
G1T H2 -5.145 -0.653 -1.188 ETKDGv3 25
G1T H3 -4.891 0.749 -0.095 ETKDGv3 26
G1T H4 -2.368 -0.021 2.867 ETKDGv3 27
G1T H5 -3.561 1.047 2.046 ETKDGv3 28
G1T H6 3.719 1.589 1.764 ETKDGv3 29
G1T H7 3.528 -1.869 -3.617 ETKDGv3 30
G1T H8 4.795 0.084 -2.122 ETKDGv3 31
G1T H9 -4.703 -0.891 3.067 ETKDGv3 32
G1T H10 -3.573 -2.027 2.267 ETKDGv3 33
G1T H11 -5.122 -2.226 0.610 ETKDGv3 34
G1T H12 -6.078 -0.845 1.225 ETKDGv3 35
G1T H13 -2.828 0.320 -1.302 ETKDGv3 36
G1T H14 -2.832 -1.425 -0.839 ETKDGv3 37
#