data_G5Q
#
_chem_comp.id G5Q
_chem_comp.name "5'-O-(N-(L-aspartyl)-sulfamoyl)N3-methyluridine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H20 N4 O11 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-08-29
_chem_comp.pdbx_modified_date 2019-12-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 452.394
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G5Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HHV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G5Q N N1 N 0 1 N N N N N N -18.616 -6.798 -14.578 2.745 2.508 0.624 N G5Q 1
G5Q CA C1 C 0 1 N N S N N N -17.889 -5.545 -14.862 3.374 1.398 -0.105 CA G5Q 2
G5Q C C2 C 0 1 N N N N N N -18.620 -4.533 -13.974 2.982 0.091 0.535 C G5Q 3
G5Q O O1 O 0 1 N N N N N N -19.683 -4.745 -13.396 2.572 0.073 1.676 O G5Q 4
G5Q CG C3 C 0 1 N N N N N N -17.004 -5.682 -17.261 5.296 2.799 -0.805 CG G5Q 5
G5Q CD C4 C 0 1 N N N N N N -17.978 -5.013 -16.296 4.895 1.554 -0.058 CD G5Q 6
G5Q OD1 O2 O 0 1 N N N N N N -15.814 -5.801 -16.904 6.591 3.140 -0.896 OD1 G5Q 7
G5Q OD2 O3 O 0 1 N N N N N N -17.465 -6.077 -18.363 4.451 3.492 -1.323 OD2 G5Q 8
G5Q "C1'" C5 C 0 1 N N R N N N -22.619 1.008 -13.932 -2.800 -0.917 0.060 "C1'" G5Q 9
G5Q C2 C6 C 0 1 N N N N N N -24.244 1.593 -12.223 -4.115 1.044 0.637 C2 G5Q 10
G5Q "C2'" C7 C 0 1 N N R N N N -21.498 2.012 -14.247 -2.874 -1.537 -1.359 "C2'" G5Q 11
G5Q "C3'" C8 C 0 1 N N S N N N -20.299 1.102 -14.537 -2.004 -2.807 -1.204 "C3'" G5Q 12
G5Q C3U C9 C 0 1 N N N N N N -25.828 2.329 -10.518 -5.536 2.905 1.300 C3U G5Q 13
G5Q C4 C10 C 0 1 N N N N N N -23.805 1.105 -9.840 -3.542 3.197 -0.067 C4 G5Q 14
G5Q "C4'" C11 C 0 1 N N R N N N -20.968 -0.141 -15.097 -1.124 -2.515 0.027 "C4'" G5Q 15
G5Q C5 C12 C 0 1 N N N N N N -22.570 0.506 -10.246 -2.413 2.665 -0.735 C5 G5Q 16
G5Q "C5'" C13 C 0 1 N N N N N N -20.147 -1.401 -15.018 0.354 -2.592 -0.359 "C5'" G5Q 17
G5Q C6 C14 C 0 1 N N N N N N -22.222 0.473 -11.542 -2.186 1.335 -0.686 C6 G5Q 18
G5Q N1 N2 N 0 1 N N N N N N -23.032 1.003 -12.516 -3.046 0.526 0.006 N1 G5Q 19
G5Q N3 N3 N 0 1 N N N N N N -24.585 1.637 -10.874 -4.365 2.366 0.604 N3 G5Q 20
G5Q N3S N4 N 0 1 N N N N N N -18.014 -3.253 -13.828 3.088 -1.058 -0.161 N3S G5Q 21
G5Q O1S O4 O 0 1 N N N N N N -17.811 -0.866 -13.345 2.848 -3.498 -0.446 O1S G5Q 22
G5Q O2 O5 O 0 1 N N N N N N -24.991 2.037 -13.077 -4.870 0.307 1.242 O2 G5Q 23
G5Q "O2'" O6 O 0 1 N N N N N N -21.893 2.743 -15.400 -4.220 -1.878 -1.698 "O2'" G5Q 24
G5Q O2S O7 O 0 1 N N N N N N -18.866 -2.343 -11.662 3.292 -2.525 1.813 O2S G5Q 25
G5Q "O3'" O8 O 0 1 N N N N N N -19.424 1.656 -15.511 -2.827 -3.952 -0.973 "O3'" G5Q 26
G5Q O4 O9 O 0 1 N N N N N N -24.211 1.163 -8.683 -3.766 4.393 -0.097 O4 G5Q 27
G5Q "O4'" O10 O 0 1 N N N N N N -22.149 -0.283 -14.285 -1.445 -1.187 0.479 "O4'" G5Q 28
G5Q "O5'" O11 O 0 1 N N N N N N -20.041 -1.739 -13.611 1.161 -2.434 0.810 "O5'" G5Q 29
G5Q S S1 S 0 1 N N N N N N -18.590 -2.007 -13.013 2.658 -2.495 0.542 S G5Q 30
G5Q H1 H1 H 0 1 N N N N N N -18.488 -7.048 -13.618 1.740 2.463 0.553 H1 G5Q 31
G5Q H2 H2 H 0 1 N N N N N N -19.590 -6.667 -14.761 3.039 2.519 1.589 H2 G5Q 32
G5Q H4 H4 H 0 1 N N N N N N -16.836 -5.625 -14.554 3.039 1.409 -1.143 H4 G5Q 33
G5Q H5 H5 H 0 1 N N N N N N -17.764 -3.934 -16.280 5.220 1.632 0.979 H5 G5Q 34
G5Q H6 H6 H 0 1 N N N N N N -19.001 -5.179 -16.665 5.364 0.685 -0.521 H6 G5Q 35
G5Q H7 H7 H 0 1 N N N N N N -15.319 -6.233 -17.590 6.799 3.947 -1.386 H7 G5Q 36
G5Q H8 H8 H 0 1 N N N N N N -23.489 1.265 -14.553 -3.513 -1.402 0.727 H8 G5Q 37
G5Q H9 H9 H 0 1 N N N N N N -21.299 2.661 -13.381 -2.447 -0.862 -2.101 H9 G5Q 38
G5Q H10 H10 H 0 1 N N N N N N -19.770 0.863 -13.602 -1.384 -2.956 -2.088 H10 G5Q 39
G5Q H11 H11 H 0 1 N N N N N N -25.972 2.287 -9.428 -5.262 3.167 2.323 H11 G5Q 40
G5Q H12 H12 H 0 1 N N N N N N -25.768 3.379 -10.840 -5.890 3.795 0.780 H12 G5Q 41
G5Q H13 H13 H 0 1 N N N N N N -26.676 1.840 -11.019 -6.326 2.155 1.316 H13 G5Q 42
G5Q H14 H14 H 0 1 N N N N N N -21.249 0.043 -16.145 -1.339 -3.236 0.816 H14 G5Q 43
G5Q H15 H15 H 0 1 N N N N N N -21.913 0.077 -9.504 -1.741 3.315 -1.278 H15 G5Q 44
G5Q H16 H16 H 0 1 N N N N N N -20.645 -2.214 -15.567 0.561 -3.560 -0.815 H16 G5Q 45
G5Q H17 H17 H 0 1 N N N N N N -19.147 -1.230 -15.444 0.586 -1.798 -1.069 H17 G5Q 46
G5Q H18 H18 H 0 1 N N N N N N -21.284 0.019 -11.825 -1.330 0.911 -1.190 H18 G5Q 47
G5Q H19 H19 H 0 1 N N N N N N -17.134 -3.120 -14.284 3.415 -1.044 -1.074 H19 G5Q 48
G5Q H20 H20 H 0 1 N N N N N N -22.636 3.295 -15.186 -4.317 -2.269 -2.577 H20 G5Q 49
G5Q H21 H21 H 0 1 N N N N N N -19.007 2.433 -15.158 -3.441 -4.147 -1.694 H21 G5Q 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G5Q OD2 CG DOUB N N 1
G5Q CG OD1 SING N N 2
G5Q CG CD SING N N 3
G5Q CD CA SING N N 4
G5Q "O3'" "C3'" SING N N 5
G5Q "O2'" "C2'" SING N N 6
G5Q "C4'" "C5'" SING N N 7
G5Q "C4'" "C3'" SING N N 8
G5Q "C4'" "O4'" SING N N 9
G5Q "C5'" "O5'" SING N N 10
G5Q CA N SING N N 11
G5Q CA C SING N N 12
G5Q "C3'" "C2'" SING N N 13
G5Q "O4'" "C1'" SING N N 14
G5Q "C2'" "C1'" SING N N 15
G5Q C N3S SING N N 16
G5Q C O DOUB N N 17
G5Q "C1'" N1 SING N N 18
G5Q N3S S SING N N 19
G5Q "O5'" S SING N N 20
G5Q O1S S DOUB N N 21
G5Q O2 C2 DOUB N N 22
G5Q S O2S DOUB N N 23
G5Q N1 C2 SING N N 24
G5Q N1 C6 SING N N 25
G5Q C2 N3 SING N N 26
G5Q C6 C5 DOUB N N 27
G5Q N3 C3U SING N N 28
G5Q N3 C4 SING N N 29
G5Q C5 C4 SING N N 30
G5Q C4 O4 DOUB N N 31
G5Q N H1 SING N N 32
G5Q N H2 SING N N 33
G5Q CA H4 SING N N 34
G5Q CD H5 SING N N 35
G5Q CD H6 SING N N 36
G5Q OD1 H7 SING N N 37
G5Q "C1'" H8 SING N N 38
G5Q "C2'" H9 SING N N 39
G5Q "C3'" H10 SING N N 40
G5Q C3U H11 SING N N 41
G5Q C3U H12 SING N N 42
G5Q C3U H13 SING N N 43
G5Q "C4'" H14 SING N N 44
G5Q C5 H15 SING N N 45
G5Q "C5'" H16 SING N N 46
G5Q "C5'" H17 SING N N 47
G5Q C6 H18 SING N N 48
G5Q N3S H19 SING N N 49
G5Q "O2'" H20 SING N N 50
G5Q "O3'" H21 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G5Q InChI InChI 1.03 InChI=1S/C14H20N4O11S/c1-17-8(19)2-3-18(14(17)25)13-11(23)10(22)7(29-13)5-28-30(26,27)16-12(24)6(15)4-9(20)21/h2-3,6-7,10-11,13,22-23H,4-5,15H2,1H3,(H,16,24)(H,20,21)/t6-,7+,10+,11+,13+/m0/s1
G5Q InChIKey InChI 1.03 ICPNIEAOMPRPLI-MQZAXFGZSA-N
G5Q SMILES_CANONICAL CACTVS 3.385 CN1C(=O)C=CN([C@@H]2O[C@H](CO[S](=O)(=O)NC(=O)[C@@H](N)CC(O)=O)[C@@H](O)[C@H]2O)C1=O
G5Q SMILES CACTVS 3.385 CN1C(=O)C=CN([CH]2O[CH](CO[S](=O)(=O)NC(=O)[CH](N)CC(O)=O)[CH](O)[CH]2O)C1=O
G5Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CN1C(=O)C=CN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COS(=O)(=O)NC(=O)[C@H](CC(=O)O)N)O)O
G5Q SMILES "OpenEye OEToolkits" 2.0.6 CN1C(=O)C=CN(C1=O)C2C(C(C(O2)COS(=O)(=O)NC(=O)C(CC(=O)O)N)O)O
#
_pdbx_chem_comp_identifier.comp_id G5Q
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"(3~{S})-3-azanyl-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxysulfonylamino]-4-oxidanylidene-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G5Q 'Create component' 2018-08-29 EBI
G5Q 'Initial release' 2019-12-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G5Q N N 12.981 -6.581 1
G5Q CA C 13.591 -5.211 2
G5Q C C 12.710 -3.997 3
G5Q O O 13.320 -2.627 4
G5Q CG C 15.965 -6.268 5
G5Q CD C 15.083 -5.054 6
G5Q OD1 O 15.355 -7.638 7
G5Q OD2 O 17.457 -6.111 8
G5Q "C1'" C 6.331 1.638 9
G5Q C2 C 7.630 3.888 10
G5Q "C2'" C 5.118 0.756 11
G5Q "C3'" C 5.581 -0.670 12
G5Q C3U C 8.929 6.138 13
G5Q C4 C 6.331 6.138 14
G5Q "C4'" C 7.081 -0.670 15
G5Q C5 C 5.032 5.388 16
G5Q "C5'" C 7.963 -1.884 17
G5Q C6 C 5.032 3.888 18
G5Q N1 N 6.331 3.138 19
G5Q N3 N 7.630 5.388 20
G5Q N3S N 11.218 -4.154 21
G5Q O1S O 11.550 -2.059 22
G5Q O2 O 8.929 3.138 23
G5Q "O2'" O 3.691 1.220 24
G5Q O2S O 9.123 -3.822 25
G5Q "O3'" O 4.699 -1.884 26
G5Q O4 O 6.331 7.638 27
G5Q "O4'" O 7.545 0.756 28
G5Q "O5'" O 9.455 -1.727 29
G5Q S S 10.336 -2.941 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G5Q OD2 CG DOUBLE NONE 1
G5Q CG OD1 SINGLE NONE 2
G5Q CG CD SINGLE NONE 3
G5Q CD CA SINGLE NONE 4
G5Q "C3'" "O3'" SINGLE BEGINWEDGE 5
G5Q "C2'" "O2'" SINGLE BEGINWEDGE 6
G5Q "C4'" "C5'" SINGLE BEGINDASH 7
G5Q "C4'" "C3'" SINGLE NONE 8
G5Q "C4'" "O4'" SINGLE NONE 9
G5Q "C5'" "O5'" SINGLE NONE 10
G5Q CA N SINGLE BEGINDASH 11
G5Q CA C SINGLE NONE 12
G5Q "C3'" "C2'" SINGLE NONE 13
G5Q "O4'" "C1'" SINGLE NONE 14
G5Q "C2'" "C1'" SINGLE NONE 15
G5Q C N3S SINGLE NONE 16
G5Q C O DOUBLE NONE 17
G5Q "C1'" N1 SINGLE BEGINDASH 18
G5Q N3S S SINGLE NONE 19
G5Q "O5'" S SINGLE NONE 20
G5Q O1S S DOUBLE NONE 21
G5Q O2 C2 DOUBLE NONE 22
G5Q S O2S DOUBLE NONE 23
G5Q N1 C2 SINGLE NONE 24
G5Q N1 C6 SINGLE NONE 25
G5Q C2 N3 SINGLE NONE 26
G5Q C6 C5 DOUBLE NONE 27
G5Q N3 C3U SINGLE NONE 28
G5Q N3 C4 SINGLE NONE 29
G5Q C5 C4 SINGLE NONE 30
G5Q C4 O4 DOUBLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G5Q MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
G5Q amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G5Q peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
G5Q pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
G5Q ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G5Q "C1'" S1 1
G5Q C2 S1 1
G5Q "C2'" S1 1
G5Q "C3'" S1 1
G5Q C4 S1 1
G5Q "C4'" S1 1
G5Q C5 S1 1
G5Q C6 S1 1
G5Q N1 S1 1
G5Q N3 S1 1
G5Q O2 S1 1
G5Q O4 S1 1
G5Q "O4'" S1 1
G5Q N3S F1 1
G5Q C F1 1
G5Q O F1 1
G5Q CA F1 1
G5Q O F2 1
G5Q C F2 1
G5Q CA F2 1
G5Q N F2 1
G5Q C5 F3 1
G5Q C6 F3 1
G5Q N1 F3 1
G5Q C2 F3 1
G5Q N3 F3 1
G5Q C4 F3 1
G5Q "C2'" F4 1
G5Q "C3'" F4 1
G5Q "C4'" F4 1
G5Q "O4'" F4 1
G5Q "C1'" F4 1
G5Q "C5'" F4 1
G5Q "O5'" F4 1
G5Q "O3'" F4 1
G5Q "O2'" F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G5Q
_pdbe_chem_comp_rdkit_properties.exactmw 452.085
_pdbe_chem_comp_rdkit_properties.amw 452.398
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 196.583
_pdbe_chem_comp_rdkit_properties.tpsa 229.480
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.854
_pdbe_chem_comp_rdkit_properties.CrippenMR 95.325
_pdbe_chem_comp_rdkit_properties.chi0v 14.504
_pdbe_chem_comp_rdkit_properties.chi1v 8.128
_pdbe_chem_comp_rdkit_properties.chi2v 3.410
_pdbe_chem_comp_rdkit_properties.chi3v 3.410
_pdbe_chem_comp_rdkit_properties.chi4v 2.048
_pdbe_chem_comp_rdkit_properties.chi0n 33.688
_pdbe_chem_comp_rdkit_properties.chi1n 16.329
_pdbe_chem_comp_rdkit_properties.chi2n 2.726
_pdbe_chem_comp_rdkit_properties.chi3n 2.726
_pdbe_chem_comp_rdkit_properties.chi4n 1.540
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.630
_pdbe_chem_comp_rdkit_properties.kappa1 8.135
_pdbe_chem_comp_rdkit_properties.kappa2 9.023
_pdbe_chem_comp_rdkit_properties.kappa3 5.290
_pdbe_chem_comp_rdkit_properties.Phi 2.447
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G5Q UniChem PDBe G5Q
G5Q UniChem PubChem 145706981
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loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G5Q N 5.052 -1.843 -0.128 ETKDGv3 1
G5Q CA 3.926 -1.206 -0.820 ETKDGv3 2
G5Q C 3.770 0.246 -0.427 ETKDGv3 3
G5Q O 3.963 0.601 0.768 ETKDGv3 4
G5Q CG 2.237 -2.120 0.841 ETKDGv3 5
G5Q CD 2.622 -1.996 -0.604 ETKDGv3 6
G5Q OD1 2.664 -3.219 1.579 ETKDGv3 7
G5Q OD2 1.549 -1.221 1.394 ETKDGv3 8
G5Q "C1'" -2.404 1.424 -0.012 ETKDGv3 9
G5Q C2 -3.853 -0.501 -0.789 ETKDGv3 10
G5Q "C2'" -2.395 1.424 1.524 ETKDGv3 11
G5Q "C3'" -0.963 1.772 1.863 ETKDGv3 12
G5Q C3U -5.295 -2.436 -1.529 ETKDGv3 13
G5Q C4 -2.789 -2.659 -1.344 ETKDGv3 14
G5Q "C4'" -0.500 2.516 0.618 ETKDGv3 15
G5Q C5 -1.484 -2.075 -1.013 ETKDGv3 16
G5Q "C5'" 1.006 2.368 0.394 ETKDGv3 17
G5Q C6 -1.385 -0.802 -0.629 ETKDGv3 18
G5Q N1 -2.545 0.050 -0.526 ETKDGv3 19
G5Q N3 -3.976 -1.851 -1.270 ETKDGv3 20
G5Q N3S 3.340 1.204 -1.403 ETKDGv3 21
G5Q O1S 3.847 3.300 0.169 ETKDGv3 22
G5Q O2 -4.886 0.196 -0.590 ETKDGv3 23
G5Q "O2'" -3.311 2.362 2.042 ETKDGv3 24
G5Q O2S 3.448 3.710 -2.198 ETKDGv3 25
G5Q "O3'" -0.861 2.585 3.004 ETKDGv3 26
G5Q O4 -2.854 -3.870 -1.687 ETKDGv3 27
G5Q "O4'" -1.204 2.002 -0.491 ETKDGv3 28
G5Q "O5'" 1.383 3.119 -0.735 ETKDGv3 29
G5Q S 3.035 2.871 -1.022 ETKDGv3 30
G5Q H1 5.931 -1.341 -0.393 ETKDGv3 31
G5Q H2 4.942 -1.743 0.907 ETKDGv3 32
G5Q H4 4.145 -1.241 -1.910 ETKDGv3 33
G5Q H5 1.796 -1.507 -1.165 ETKDGv3 34
G5Q H6 2.743 -3.016 -1.029 ETKDGv3 35
G5Q H7 2.422 -3.312 2.559 ETKDGv3 36
G5Q H8 -3.243 2.048 -0.391 ETKDGv3 37
G5Q H9 -2.651 0.423 1.937 ETKDGv3 38
G5Q H10 -0.375 0.833 1.999 ETKDGv3 39
G5Q H11 -5.228 -3.232 -2.301 ETKDGv3 40
G5Q H12 -5.997 -1.666 -1.912 ETKDGv3 41
G5Q H13 -5.701 -2.869 -0.591 ETKDGv3 42
G5Q H14 -0.742 3.599 0.716 ETKDGv3 43
G5Q H15 -0.592 -2.687 -1.074 ETKDGv3 44
G5Q H16 1.234 1.291 0.241 ETKDGv3 45
G5Q H17 1.540 2.738 1.298 ETKDGv3 46
G5Q H18 -0.406 -0.414 -0.387 ETKDGv3 47
G5Q H19 3.161 0.892 -2.383 ETKDGv3 48
G5Q H20 -3.083 3.256 1.672 ETKDGv3 49
G5Q H21 -1.035 1.996 3.783 ETKDGv3 50
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