data_G5T
#
_chem_comp.id G5T
_chem_comp.name 3-(6-morpholin-4-ylpyridin-2-yl)phenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H16 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-08-29
_chem_comp.pdbx_modified_date 2019-09-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 256.300
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G5T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HI1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G5T C10 C1 C 0 1 Y N N N N N -8.654 -32.008 22.802 -0.422 3.124 -0.195 C10 G5T 1
G5T C15 C2 C 0 1 N N N N N N -7.231 -28.253 25.577 -3.508 0.453 0.677 C15 G5T 2
G5T O01 O1 O 0 1 N N N N N N -13.445 -27.251 25.450 3.621 -2.909 -0.093 O01 G5T 3
G5T C02 C3 C 0 1 Y N N N N N -13.034 -28.089 24.466 3.527 -1.558 0.023 C02 G5T 4
G5T C03 C4 C 0 1 Y N N N N N -13.895 -28.200 23.370 4.669 -0.799 0.240 C03 G5T 5
G5T C04 C5 C 0 1 Y N N N N N -13.528 -29.036 22.330 4.579 0.576 0.352 C04 G5T 6
G5T C05 C6 C 0 1 Y N N N N N -12.308 -29.706 22.349 3.353 1.202 0.249 C05 G5T 7
G5T C06 C7 C 0 1 Y N N N N N -11.463 -29.585 23.446 2.202 0.447 0.031 C06 G5T 8
G5T C07 C8 C 0 1 Y N N N N N -11.832 -28.792 24.529 2.293 -0.938 -0.082 C07 G5T 9
G5T C08 C9 C 0 1 Y N N N N N -10.155 -30.258 23.454 0.883 1.117 -0.079 C08 G5T 10
G5T C09 C10 C 0 1 Y N N N N N -9.926 -31.446 22.749 0.814 2.507 -0.085 C09 G5T 11
G5T C11 C11 C 0 1 Y N N N N N -7.659 -31.413 23.557 -1.552 2.330 -0.295 C11 G5T 12
G5T C12 C12 C 0 1 Y N N N N N -7.981 -30.241 24.283 -1.414 0.945 -0.288 C12 G5T 13
G5T N13 N1 N 0 1 Y N N N N N -9.207 -29.634 24.195 -0.220 0.386 -0.187 N13 G5T 14
G5T N14 N2 N 0 1 N N N N N N -7.095 -29.684 25.222 -2.544 0.141 -0.388 N14 G5T 15
G5T C16 C13 C 0 1 N N N N N N -6.569 -28.048 26.948 -4.759 -0.411 0.494 C16 G5T 16
G5T O17 O2 O 0 1 N N N N N N -5.229 -28.460 26.902 -4.382 -1.791 0.491 O17 G5T 17
G5T C18 C14 C 0 1 N N N N N N -5.100 -29.826 26.623 -3.445 -2.129 -0.534 C18 G5T 18
G5T C19 C15 C 0 1 N N N N N N -5.700 -30.154 25.240 -2.181 -1.283 -0.362 C19 G5T 19
G5T H26 H1 H 0 1 N N N N N N -8.443 -32.913 22.251 -0.503 4.201 -0.197 H26 G5T 20
G5T H29 H2 H 0 1 N N N N N N -6.729 -27.630 24.822 -3.059 0.242 1.648 H29 G5T 21
G5T H28 H3 H 0 1 N N N N N N -8.295 -27.979 25.630 -3.782 1.506 0.624 H28 G5T 22
G5T H20 H4 H 0 1 N N N N N N -12.800 -27.241 26.148 3.764 -3.217 -0.998 H20 G5T 23
G5T H21 H5 H 0 1 N N N N N N -14.822 -27.648 23.336 5.630 -1.284 0.321 H21 G5T 24
G5T H22 H6 H 0 1 N N N N N N -14.197 -29.170 21.493 5.470 1.162 0.521 H22 G5T 25
G5T H23 H7 H 0 1 N N N N N N -12.018 -30.321 21.510 3.286 2.276 0.338 H23 G5T 26
G5T H24 H8 H 0 1 N N N N N N -11.199 -28.723 25.401 1.404 -1.526 -0.255 H24 G5T 27
G5T H25 H9 H 0 1 N N N N N N -10.715 -31.914 22.179 1.715 3.099 -0.006 H25 G5T 28
G5T H27 H10 H 0 1 N N N N N N -6.664 -31.831 23.592 -2.530 2.781 -0.377 H27 G5T 29
G5T H31 H11 H 0 1 N N N N N N -6.613 -26.983 27.218 -5.452 -0.225 1.314 H31 G5T 30
G5T H30 H12 H 0 1 N N N N N N -7.106 -28.640 27.704 -5.238 -0.162 -0.452 H30 G5T 31
G5T H32 H13 H 0 1 N N N N N N -5.630 -30.405 27.394 -3.188 -3.186 -0.459 H32 G5T 32
G5T H33 H14 H 0 1 N N N N N N -4.034 -30.098 26.629 -3.886 -1.931 -1.511 H33 G5T 33
G5T H34 H15 H 0 1 N N N N N N -5.671 -31.240 25.069 -1.486 -1.496 -1.174 H34 G5T 34
G5T H35 H16 H 0 1 N N N N N N -5.125 -29.643 24.454 -1.710 -1.521 0.592 H35 G5T 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G5T C04 C05 DOUB Y N 1
G5T C04 C03 SING Y N 2
G5T C05 C06 SING Y N 3
G5T C09 C10 DOUB Y N 4
G5T C09 C08 SING Y N 5
G5T C10 C11 SING Y N 6
G5T C03 C02 DOUB Y N 7
G5T C06 C08 SING N N 8
G5T C06 C07 DOUB Y N 9
G5T C08 N13 DOUB Y N 10
G5T C11 C12 DOUB Y N 11
G5T N13 C12 SING Y N 12
G5T C12 N14 SING N N 13
G5T C02 C07 SING Y N 14
G5T C02 O01 SING N N 15
G5T N14 C19 SING N N 16
G5T N14 C15 SING N N 17
G5T C19 C18 SING N N 18
G5T C15 C16 SING N N 19
G5T C18 O17 SING N N 20
G5T O17 C16 SING N N 21
G5T C10 H26 SING N N 22
G5T C15 H29 SING N N 23
G5T C15 H28 SING N N 24
G5T O01 H20 SING N N 25
G5T C03 H21 SING N N 26
G5T C04 H22 SING N N 27
G5T C05 H23 SING N N 28
G5T C07 H24 SING N N 29
G5T C09 H25 SING N N 30
G5T C11 H27 SING N N 31
G5T C16 H31 SING N N 32
G5T C16 H30 SING N N 33
G5T C18 H32 SING N N 34
G5T C18 H33 SING N N 35
G5T C19 H34 SING N N 36
G5T C19 H35 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G5T InChI InChI 1.03 InChI=1S/C15H16N2O2/c18-13-4-1-3-12(11-13)14-5-2-6-15(16-14)17-7-9-19-10-8-17/h1-6,11,18H,7-10H2
G5T InChIKey InChI 1.03 HHRAPFSCLJQTTE-UHFFFAOYSA-N
G5T SMILES_CANONICAL CACTVS 3.385 Oc1cccc(c1)c2cccc(n2)N3CCOCC3
G5T SMILES CACTVS 3.385 Oc1cccc(c1)c2cccc(n2)N3CCOCC3
G5T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(cc(c1)O)c2cccc(n2)N3CCOCC3
G5T SMILES "OpenEye OEToolkits" 2.0.6 c1cc(cc(c1)O)c2cccc(n2)N3CCOCC3
#
_pdbx_chem_comp_identifier.comp_id G5T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 3-(6-morpholin-4-ylpyridin-2-yl)phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G5T 'Create component' 2018-08-29 EBI
G5T 'Initial release' 2019-09-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G5T C10 C 10.301 2.625 1
G5T C15 C 12.899 -1.875 2
G5T O01 O 3.805 0.375 3
G5T C02 C 5.104 -0.375 4
G5T C03 C 5.104 -1.875 5
G5T C04 C 6.404 -2.625 6
G5T C05 C 7.702 -1.875 7
G5T C06 C 7.702 -0.375 8
G5T C07 C 6.404 0.375 9
G5T C08 C 9.002 0.375 10
G5T C09 C 9.002 1.875 11
G5T C11 C 11.600 1.875 12
G5T C12 C 11.600 0.375 13
G5T N13 N 10.301 -0.375 14
G5T N14 N 12.899 -0.375 15
G5T C16 C 14.198 -2.625 16
G5T O17 O 15.497 -1.875 17
G5T C18 C 15.497 -0.375 18
G5T C19 C 14.198 0.375 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G5T C04 C05 DOUBLE NONE 1
G5T C04 C03 SINGLE NONE 2
G5T C05 C06 SINGLE NONE 3
G5T C09 C10 DOUBLE NONE 4
G5T C09 C08 SINGLE NONE 5
G5T C10 C11 SINGLE NONE 6
G5T C03 C02 DOUBLE NONE 7
G5T C06 C08 SINGLE NONE 8
G5T C06 C07 DOUBLE NONE 9
G5T C08 N13 DOUBLE NONE 10
G5T C11 C12 DOUBLE NONE 11
G5T N13 C12 SINGLE NONE 12
G5T C12 N14 SINGLE NONE 13
G5T C02 C07 SINGLE NONE 14
G5T C02 O01 SINGLE NONE 15
G5T N14 C19 SINGLE NONE 16
G5T N14 C15 SINGLE NONE 17
G5T C19 C18 SINGLE NONE 18
G5T C15 C16 SINGLE NONE 19
G5T C18 O17 SINGLE NONE 20
G5T O17 C16 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G5T MurckoScaffold S1 scaffold c1ccc(-c2cccc(N3CCOCC3)n2)cc1 InChI=1S/C15H16N2O/c1-2-5-13(6-3-1)14-7-4-8-15(16-14)17-9-11-18-12-10-17/h1-8H,9-12H2 GUUWRLBALIXDFK-UHFFFAOYSA-N
G5T phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
G5T pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G5T C10 S1 1
G5T C15 S1 1
G5T C02 S1 1
G5T C03 S1 1
G5T C04 S1 1
G5T C05 S1 1
G5T C06 S1 1
G5T C07 S1 1
G5T C08 S1 1
G5T C09 S1 1
G5T C11 S1 1
G5T C12 S1 1
G5T N13 S1 1
G5T N14 S1 1
G5T C16 S1 1
G5T O17 S1 1
G5T C18 S1 1
G5T C19 S1 1
G5T C02 F1 1
G5T C03 F1 1
G5T C04 F1 1
G5T C05 F1 1
G5T C06 F1 1
G5T C07 F1 1
G5T C08 F2 1
G5T C09 F2 1
G5T C10 F2 1
G5T C11 F2 1
G5T C12 F2 1
G5T N13 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G5T
_pdbe_chem_comp_rdkit_properties.exactmw 256.121
_pdbe_chem_comp_rdkit_properties.amw 256.305
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.267
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.396
_pdbe_chem_comp_rdkit_properties.tpsa 45.590
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.068
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.614
_pdbe_chem_comp_rdkit_properties.chi0v 9.211
_pdbe_chem_comp_rdkit_properties.chi1v 4.980
_pdbe_chem_comp_rdkit_properties.chi2v 2.041
_pdbe_chem_comp_rdkit_properties.chi3v 2.041
_pdbe_chem_comp_rdkit_properties.chi4v 1.274
_pdbe_chem_comp_rdkit_properties.chi0n 25.211
_pdbe_chem_comp_rdkit_properties.chi1n 12.889
_pdbe_chem_comp_rdkit_properties.chi2n 2.041
_pdbe_chem_comp_rdkit_properties.chi3n 2.041
_pdbe_chem_comp_rdkit_properties.chi4n 1.274
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.070
_pdbe_chem_comp_rdkit_properties.kappa1 3.521
_pdbe_chem_comp_rdkit_properties.kappa2 5.281
_pdbe_chem_comp_rdkit_properties.kappa3 2.685
_pdbe_chem_comp_rdkit_properties.Phi 0.979
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G5T UniChem PDBe G5T
G5T UniChem 'PubChem TPHARMA' 24435859
G5T UniChem PubChem 16049523
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G5T C10 0.052 2.999 0.382 ETKDGv3 1
G5T C15 -2.413 -0.966 -1.065 ETKDGv3 2
G5T O01 6.007 0.176 1.211 ETKDGv3 3
G5T C02 4.855 -0.283 0.574 ETKDGv3 4
G5T C03 4.862 -1.438 -0.109 ETKDGv3 5
G5T C04 3.633 -1.911 -0.772 ETKDGv3 6
G5T C05 2.509 -1.188 -0.699 ETKDGv3 7
G5T C06 2.486 0.100 0.046 ETKDGv3 8
G5T C07 3.613 0.516 0.658 ETKDGv3 9
G5T C08 1.223 0.877 0.124 ETKDGv3 10
G5T C09 1.217 2.348 0.329 ETKDGv3 11
G5T C11 -1.215 2.260 0.234 ETKDGv3 12
G5T C12 -1.190 0.927 0.043 ETKDGv3 13
G5T N13 0.084 0.256 -0.014 ETKDGv3 14
G5T N14 -2.403 0.159 -0.122 ETKDGv3 15
G5T C16 -3.451 -2.007 -0.638 ETKDGv3 16
G5T O17 -4.711 -1.401 -0.423 ETKDGv3 17
G5T C18 -4.630 -0.524 0.682 ETKDGv3 18
G5T C19 -3.694 0.651 0.380 ETKDGv3 19
G5T H26 0.035 4.072 0.518 ETKDGv3 20
G5T H29 -2.665 -0.586 -2.079 ETKDGv3 21
G5T H28 -1.420 -1.460 -1.113 ETKDGv3 22
G5T H20 6.878 -0.342 1.178 ETKDGv3 23
G5T H21 5.765 -2.032 -0.177 ETKDGv3 24
G5T H22 3.643 -2.844 -1.320 ETKDGv3 25
G5T H23 1.617 -1.548 -1.198 ETKDGv3 26
G5T H24 3.632 1.424 1.245 ETKDGv3 27
G5T H25 2.138 2.909 0.405 ETKDGv3 28
G5T H27 -2.144 2.814 0.254 ETKDGv3 29
G5T H31 -3.555 -2.759 -1.448 ETKDGv3 30
G5T H30 -3.105 -2.554 0.269 ETKDGv3 31
G5T H32 -5.645 -0.125 0.891 ETKDGv3 32
G5T H33 -4.297 -1.061 1.600 ETKDGv3 33
G5T H34 -4.158 1.310 -0.385 ETKDGv3 34
G5T H35 -3.552 1.230 1.319 ETKDGv3 35
#