data_G6N
#
_chem_comp.id G6N
_chem_comp.name
"[(2~{S},3~{S},4~{R})-4-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,3-bis(oxidanyl)-5-[oxidanyl-[(2~{R})-2-oxidanylpropoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H47 N O24 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-27
_chem_comp.pdbx_modified_date 2022-08-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 783.559
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G6N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7QXC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G6N C2 C1 C 0 1 N N R N N N 28.136 19.324 37.535 -0.992 -3.230 -1.510 C2 G6N 1
G6N C4 C2 C 0 1 N N R N N N 29.821 17.939 38.765 -1.393 -1.208 -0.103 C4 G6N 2
G6N C5 C3 C 0 1 N N R N N N 30.518 19.211 36.883 -3.100 -1.901 -1.638 C5 G6N 3
G6N C6 C4 C 0 1 N N N N N N 31.763 19.878 36.329 -4.619 -1.977 -1.809 C6 G6N 4
G6N C7 C5 C 0 1 N N N N N N 27.431 17.306 40.653 1.220 -2.385 1.305 C7 G6N 5
G6N C8 C6 C 0 1 N N N N N N 28.212 18.077 41.664 2.705 -2.234 1.512 C8 G6N 6
G6N C9 C7 C 0 1 N N R N N N 30.411 15.675 38.254 -0.783 1.019 -0.748 C9 G6N 7
G6N C10 C8 C 0 1 N N N N N N 30.898 15.001 36.999 -2.023 1.712 -1.314 C10 G6N 8
G6N C11 C9 C 0 1 N N S N N N 29.540 14.756 39.085 0.475 1.668 -1.329 C11 G6N 9
G6N C12 C10 C 0 1 N N N N N N 32.233 14.085 34.085 -7.048 1.510 0.306 C12 G6N 10
G6N O14 O1 O 0 1 N N N N N N 27.662 11.807 43.040 5.764 2.969 -0.934 O14 G6N 11
G6N C15 C11 C 0 1 N N S N N N 30.401 13.687 39.761 1.715 0.975 -0.764 C15 G6N 12
G6N C16 C12 C 0 1 N N N N N N 29.588 12.828 40.703 2.973 1.624 -1.345 C16 G6N 13
G6N C17 C13 C 0 1 N N N N N N 30.946 13.523 44.123 8.076 1.023 -0.139 C17 G6N 14
G6N C18 C14 C 0 1 N N R N N N 31.721 12.976 45.302 8.770 0.144 0.904 C18 G6N 15
G6N C19 C15 C 0 1 N N S N N N 32.386 11.629 44.990 10.252 0.516 0.982 C19 G6N 16
G6N C20 C16 C 0 1 N N S N N N 33.374 11.120 46.049 10.945 -0.363 2.024 C20 G6N 17
G6N O21 O2 O 0 1 N N N N N N 33.479 10.181 48.268 13.049 -0.728 3.155 O21 G6N 18
G6N C1 C17 C 0 1 N N S N N N 29.312 20.133 37.010 -2.504 -3.307 -1.742 C1 G6N 19
G6N C3 C18 C 0 1 N N R N N N 28.490 18.689 38.879 -0.728 -2.586 -0.145 C3 G6N 20
G6N O1 O3 O 0 1 N N N N N N 30.846 18.751 38.208 -2.792 -1.347 -0.357 O1 G6N 21
G6N O2 O4 O 0 1 N N N N N N 29.634 16.845 37.924 -0.809 -0.366 -1.099 O2 G6N 22
G6N N1 N1 N 0 1 N N N N N N 27.490 17.766 39.391 0.716 -2.439 0.056 N1 G6N 23
G6N O3 O5 O 0 1 N N N N N N 26.992 20.158 37.634 -0.437 -4.547 -1.532 O3 G6N 24
G6N O4 O6 O 0 1 N N N N N N 28.970 20.703 35.745 -2.761 -3.839 -3.043 O4 G6N 25
G6N O5 O7 O 0 1 N N N N N N 32.029 21.115 36.977 -5.161 -0.655 -1.846 O5 G6N 26
G6N O6 O8 O 0 1 N N N N N N 26.773 16.315 40.983 0.479 -2.457 2.262 O6 G6N 27
G6N O7 O9 O 0 1 N N N N N N 31.941 15.842 36.455 -3.191 1.198 -0.671 O7 G6N 28
G6N P1 P1 P 0 1 N N N N N N 33.393 15.198 36.199 -4.617 1.944 -0.716 P1 G6N 29
G6N O8 O10 O 0 1 N N N N N N 33.051 13.922 35.282 -5.707 1.068 0.082 O8 G6N 30
G6N C13 C19 C 0 1 N N S N N N 31.123 13.062 33.965 -7.774 0.501 1.199 C13 G6N 31
G6N C14 C20 C 0 1 N N N N N N 31.167 12.028 35.057 -9.167 1.034 1.541 C14 G6N 32
G6N O9 O11 O 0 1 N N N N N N 28.515 14.112 38.329 0.501 3.053 -0.978 O9 G6N 33
G6N O10 O12 O 0 1 N N N N N N 29.016 13.685 41.747 4.131 1.056 -0.730 O10 G6N 34
G6N P2 P2 P 0 1 N N N N N N 28.534 13.030 43.133 5.631 1.505 -1.102 P2 G6N 35
G6N O11 O13 O 0 1 N N N N N N 29.951 12.533 43.711 6.673 0.756 -0.129 O11 G6N 36
G6N O12 O14 O 0 1 N N N N N N 27.994 14.191 43.924 5.946 1.110 -2.631 O12 G6N 37
G6N O13 O15 O 0 1 N N N N N N 33.882 14.653 37.514 -5.084 2.115 -2.248 O13 G6N 38
G6N C21 C21 C 0 1 N N N N N N 32.665 10.919 47.374 12.427 0.010 2.102 C21 G6N 39
G6N O15 O16 O 0 1 N N N N N N 34.214 16.208 35.452 -4.497 3.277 -0.085 O15 G6N 40
G6N O16 O17 O 0 1 N N N N N N 31.471 14.310 40.481 1.689 -0.410 -1.115 O16 G6N 41
G6N O17 O18 O 0 1 N N N N N N 29.831 13.712 33.951 -7.896 -0.744 0.509 O17 G6N 42
G6N O18 O19 O 0 1 N N N N N N 30.792 12.810 46.377 8.643 -1.230 0.529 O18 G6N 43
G6N O19 O20 O 0 1 N N N N N N 34.503 11.979 46.261 10.818 -1.736 1.649 O19 G6N 44
G6N O20 O21 O 0 1 N N N N N N 33.013 11.705 43.710 10.378 1.890 1.357 O20 G6N 45
G6N H1 H1 H 0 1 N N N N N N 27.935 18.513 36.820 -0.531 -2.627 -2.293 H1 G6N 46
G6N H2 H2 H 0 1 N N N N N N 30.116 17.602 39.770 -1.245 -0.763 0.881 H2 G6N 47
G6N H3 H3 H 0 1 N N N N N N 30.251 18.358 36.241 -2.678 -1.268 -2.418 H3 G6N 48
G6N H4 H4 H 0 1 N N N N N N 32.622 19.207 36.475 -4.854 -2.492 -2.740 H4 G6N 49
G6N H5 H5 H 0 1 N N N N N N 31.620 20.062 35.254 -5.052 -2.523 -0.971 H5 G6N 50
G6N H6 H6 H 0 1 N N N N N N 28.085 17.617 42.655 2.923 -2.209 2.579 H6 G6N 51
G6N H7 H7 H 0 1 N N N N N N 29.277 18.067 41.390 3.223 -3.077 1.055 H7 G6N 52
G6N H8 H8 H 0 1 N N N N N N 27.850 19.115 41.692 3.044 -1.306 1.050 H8 G6N 53
G6N H9 H9 H 0 1 N N N N N N 31.283 15.970 38.856 -0.774 1.118 0.338 H9 G6N 54
G6N H10 H10 H 0 1 N N N N N N 30.074 14.903 36.277 -1.953 2.785 -1.135 H10 G6N 55
G6N H11 H11 H 0 1 N N N N N N 31.299 14.004 37.235 -2.087 1.526 -2.386 H11 G6N 56
G6N H12 H12 H 0 1 N N N N N N 29.074 15.359 39.878 0.466 1.569 -2.415 H12 G6N 57
G6N H13 H13 H 0 1 N N N N N N 32.885 13.996 33.204 -7.032 2.483 0.796 H13 G6N 58
G6N H14 H14 H 0 1 N N N N N N 31.781 15.088 34.107 -7.568 1.590 -0.648 H14 G6N 59
G6N H15 H15 H 0 1 N N N N N N 30.819 13.039 38.976 1.724 1.074 0.322 H15 G6N 60
G6N H16 H16 H 0 1 N N N N N N 28.779 12.332 40.147 3.009 1.448 -2.420 H16 G6N 61
G6N H17 H17 H 0 1 N N N N N N 30.236 12.067 41.163 2.949 2.697 -1.153 H17 G6N 62
G6N H18 H18 H 0 1 N N N N N N 31.635 13.724 43.289 8.248 2.073 0.099 H18 G6N 63
G6N H19 H19 H 0 1 N N N N N N 30.441 14.456 44.414 8.481 0.803 -1.127 H19 G6N 64
G6N H20 H20 H 0 1 N N N N N N 32.501 13.698 45.584 8.304 0.299 1.877 H20 G6N 65
G6N H21 H21 H 0 1 N N N N N N 31.578 10.885 44.929 10.717 0.361 0.008 H21 G6N 66
G6N H22 H22 H 0 1 N N N N N N 33.738 10.137 45.714 10.480 -0.208 2.997 H22 G6N 67
G6N H23 H23 H 0 1 N N N N N N 33.020 10.064 49.092 13.992 -0.542 3.262 H23 G6N 68
G6N H24 H24 H 0 1 N N N N N N 29.547 20.928 37.732 -2.956 -3.951 -0.988 H24 G6N 69
G6N H25 H25 H 0 1 N N N N N N 28.626 19.501 39.608 -1.144 -3.216 0.641 H25 G6N 70
G6N H26 H26 H 0 1 N N N N N N 26.789 17.447 38.753 1.309 -2.382 -0.710 H26 G6N 71
G6N H27 H27 H 0 1 N N N N N N 26.258 19.652 37.962 -0.568 -5.014 -2.368 H27 G6N 72
G6N H28 H28 H 0 1 N N N N N N 28.217 21.273 35.847 -3.701 -3.912 -3.259 H28 G6N 73
G6N H29 H29 H 0 1 N N N N N N 32.813 21.505 36.607 -6.126 -0.627 -1.888 H29 G6N 74
G6N H30 H30 H 0 1 N N N N N N 31.258 12.539 33.007 -7.206 0.354 2.117 H30 G6N 75
G6N H31 H31 H 0 1 N N N N N N 32.152 11.539 35.060 -9.735 1.181 0.623 H31 G6N 76
G6N H34 H34 H 0 1 N N N N N N 28.004 13.551 38.901 0.510 3.217 -0.025 H34 G6N 77
G6N H35 H35 H 0 1 N N N N N N 27.136 13.970 44.267 5.878 0.163 -2.815 H35 G6N 78
G6N H36 H36 H 0 1 N N N N N N 34.719 15.047 37.729 -5.212 1.279 -2.716 H36 G6N 79
G6N H37 H37 H 0 1 N N N N N N 32.440 11.901 47.816 12.911 -0.228 1.155 H37 G6N 80
G6N H38 H38 H 0 1 N N N N N N 31.727 10.371 47.203 12.523 1.077 2.301 H38 G6N 81
G6N H39 H39 H 0 1 N N N N N N 32.003 13.643 40.899 1.680 -0.574 -2.068 H39 G6N 82
G6N H40 H40 H 0 1 N N N N N N 29.147 13.057 33.875 -8.392 -0.688 -0.319 H40 G6N 83
G6N H41 H41 H 0 1 N N N N N N 31.245 12.466 47.138 9.036 -1.441 -0.329 H41 G6N 84
G6N H42 H42 H 0 1 N N N N N N 35.068 11.602 46.926 11.211 -1.947 0.791 H42 G6N 85
G6N H43 H43 H 0 1 N N N N N N 33.427 10.874 43.510 9.985 2.101 2.215 H43 G6N 86
G6N C23 C23 C 0 1 N N N N N N ? ? ? -9.893 0.026 2.434 C23 G6N 87
G6N C24 C24 C 0 1 N N N N N N ? ? ? -11.286 0.558 2.776 C24 G6N 88
G6N O22 O22 O 0 1 N N N N N N ? ? ? -9.044 2.279 2.231 O22 G6N 89
G6N O23 O23 O 0 1 N N N N N N ? ? ? -10.015 -1.220 1.744 O23 G6N 90
G6N O24 O24 O 0 1 N N N N N N ? ? ? -11.920 -0.326 3.703 O24 G6N 91
G6N H32 H32 H 0 1 N N N N N N ? ? ? -9.325 -0.122 3.352 H32 G6N 92
G6N H33 H33 H 0 1 N N N N N N ? ? ? -11.197 1.548 3.222 H33 G6N 93
G6N H44 H44 H 0 1 N N N N N N ? ? ? -11.884 0.622 1.867 H44 G6N 94
G6N H45 H45 H 0 1 N N N N N N ? ? ? -8.549 2.223 3.059 H45 G6N 95
G6N H46 H46 H 0 1 N N N N N N ? ? ? -10.511 -1.164 0.916 H46 G6N 96
G6N H47 H47 H 0 1 N N N N N N ? ? ? -12.809 -0.051 3.965 H47 G6N 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G6N O17 C13 SING N N 1
G6N C13 C12 SING N N 2
G6N C13 C14 SING N N 3
G6N C12 O8 SING N N 4
G6N O8 P1 SING N N 5
G6N O15 P1 DOUB N N 6
G6N O4 C1 SING N N 7
G6N P1 O7 SING N N 8
G6N P1 O13 SING N N 9
G6N C6 C5 SING N N 10
G6N C6 O5 SING N N 11
G6N O7 C10 SING N N 12
G6N C5 C1 SING N N 13
G6N C5 O1 SING N N 14
G6N C10 C9 SING N N 15
G6N C1 C2 SING N N 16
G6N C2 O3 SING N N 17
G6N C2 C3 SING N N 18
G6N O2 C9 SING N N 19
G6N O2 C4 SING N N 20
G6N O1 C4 SING N N 21
G6N C9 C11 SING N N 22
G6N O9 C11 SING N N 23
G6N C4 C3 SING N N 24
G6N C3 N1 SING N N 25
G6N C11 C15 SING N N 26
G6N N1 C7 SING N N 27
G6N C15 O16 SING N N 28
G6N C15 C16 SING N N 29
G6N C7 O6 DOUB N N 30
G6N C7 C8 SING N N 31
G6N C16 O10 SING N N 32
G6N O10 P2 SING N N 33
G6N O14 P2 DOUB N N 34
G6N P2 O11 SING N N 35
G6N P2 O12 SING N N 36
G6N O20 C19 SING N N 37
G6N O11 C17 SING N N 38
G6N C17 C18 SING N N 39
G6N C19 C18 SING N N 40
G6N C19 C20 SING N N 41
G6N C18 O18 SING N N 42
G6N C20 O19 SING N N 43
G6N C20 C21 SING N N 44
G6N C21 O21 SING N N 45
G6N C2 H1 SING N N 46
G6N C4 H2 SING N N 47
G6N C5 H3 SING N N 48
G6N C6 H4 SING N N 49
G6N C6 H5 SING N N 50
G6N C8 H6 SING N N 51
G6N C8 H7 SING N N 52
G6N C8 H8 SING N N 53
G6N C9 H9 SING N N 54
G6N C10 H10 SING N N 55
G6N C10 H11 SING N N 56
G6N C11 H12 SING N N 57
G6N C12 H13 SING N N 58
G6N C12 H14 SING N N 59
G6N C15 H15 SING N N 60
G6N C16 H16 SING N N 61
G6N C16 H17 SING N N 62
G6N C17 H18 SING N N 63
G6N C17 H19 SING N N 64
G6N C18 H20 SING N N 65
G6N C19 H21 SING N N 66
G6N C20 H22 SING N N 67
G6N O21 H23 SING N N 68
G6N C1 H24 SING N N 69
G6N C3 H25 SING N N 70
G6N N1 H26 SING N N 71
G6N O3 H27 SING N N 72
G6N O4 H28 SING N N 73
G6N O5 H29 SING N N 74
G6N C13 H30 SING N N 75
G6N C14 H31 SING N N 76
G6N O9 H34 SING N N 77
G6N O12 H35 SING N N 78
G6N O13 H36 SING N N 79
G6N C21 H37 SING N N 80
G6N C21 H38 SING N N 81
G6N O16 H39 SING N N 82
G6N O17 H40 SING N N 83
G6N O18 H41 SING N N 84
G6N O19 H42 SING N N 85
G6N O20 H43 SING N N 86
G6N C14 C23 SING N N 87
G6N C24 C23 SING N N 88
G6N O22 C14 SING N N 89
G6N O23 C23 SING N N 90
G6N O24 C24 SING N N 91
G6N C23 H32 SING N N 92
G6N C24 H33 SING N N 93
G6N C24 H44 SING N N 94
G6N O22 H45 SING N N 95
G6N O23 H46 SING N N 96
G6N O24 H47 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G6N InChI InChI 1.06 InChI=1S/C23H47NO24P2/c1-9(28)24-17-22(38)21(37)15(4-27)47-23(17)48-16(8-46-50(41,42)44-6-13(32)19(35)11(30)3-26)20(36)14(33)7-45-49(39,40)43-5-12(31)18(34)10(29)2-25/h10-23,25-27,29-38H,2-8H2,1H3,(H,24,28)(H,39,40)(H,41,42)/t10-,11?,12+,13-,14-,15+,16+,17+,18-,19?,20-,21+,22+,23+/m0/s1
G6N InChIKey InChI 1.06 CTFVIOIQZHDZBZ-PFSLZBRHSA-N
G6N SMILES_CANONICAL CACTVS 3.385 CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@H](CO[P](O)(=O)OC[C@H](O)C(O)C(O)CO)[C@@H](O)[C@@H](O)CO[P](O)(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)CO
G6N SMILES CACTVS 3.385 CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH](CO[P](O)(=O)OC[CH](O)C(O)C(O)CO)[CH](O)[CH](O)CO[P](O)(=O)OC[CH](O)[CH](O)[CH](O)CO
G6N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[C@H](COP(=O)(O)OC[C@@H]([C@H]([C@H](CO)O)O)O)[C@H]([C@H](COP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)O)CO)O)O
G6N SMILES "OpenEye OEToolkits" 2.0.7 CC(=O)NC1C(C(C(OC1OC(COP(=O)(O)OCC(C(C(CO)O)O)O)C(C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)O)CO)O)O
#
_pdbx_chem_comp_identifier.comp_id G6N
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(2~{R},3~{S},4~{S})-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)-5-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{S},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G6N 'Create component' 2022-01-27 PDBE
G6N 'Modify descriptor' 2022-08-22 RCSB
G6N 'Initial release' 2022-08-31 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G6N C2 C -6.779 -1.821 1
G6N C4 C -4.181 -1.818 2
G6N C5 C -5.482 0.431 3
G6N C6 C -5.483 1.931 4
G6N C7 C -6.777 -4.820 5
G6N C8 C -6.776 -6.320 6
G6N C9 C -1.583 -1.816 7
G6N C10 C -0.284 -2.565 8
G6N C11 C -1.585 -0.316 9
G6N C12 C 3.615 -4.812 10
G6N O14 O 2.510 4.187 11
G6N C15 C -0.286 0.435 12
G6N C16 C -0.287 1.935 13
G6N C17 C 2.307 6.437 14
G6N C18 C 2.306 7.937 15
G6N C19 C 3.604 8.688 16
G6N C20 C 3.603 10.188 17
G6N O21 O 4.900 12.439 18
G6N C1 C -6.781 -0.320 19
G6N C3 C -5.480 -2.569 20
G6N O1 O -4.182 -0.318 21
G6N O2 O -2.882 -2.567 22
G6N N1 N -5.479 -4.069 23
G6N O3 O -8.078 -2.571 24
G6N O4 O -8.080 0.429 25
G6N O5 O -6.783 2.680 26
G6N O6 O -8.077 -4.071 27
G6N O7 O 1.015 -1.814 28
G6N P1 P 2.314 -2.563 29
G6N O8 O 3.614 -3.312 30
G6N C13 C 4.915 -5.561 31
G6N C14 C 4.916 -7.061 32
G6N O9 O -2.884 0.433 33
G6N O10 O 1.011 2.686 34
G6N P2 P 1.010 4.186 35
G6N O11 O 1.009 5.686 36
G6N O12 O -0.490 4.185 37
G6N O13 O 3.063 -1.263 38
G6N C21 C 4.901 10.939 39
G6N O15 O 1.565 -3.863 40
G6N O16 O 1.013 -0.314 41
G6N O17 O 6.213 -4.810 42
G6N O18 O 1.006 8.686 43
G6N O19 O 2.303 10.937 44
G6N O20 O 4.904 7.939 45
G6N C23 C 6.215 -7.810 46
G6N C24 C 6.217 -9.310 47
G6N O22 O 3.617 -7.812 48
G6N O23 O 7.514 -7.059 49
G6N O24 O 7.516 -10.059 50
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G6N C13 O17 SINGLE BEGINDASH 1
G6N C13 C12 SINGLE NONE 2
G6N C13 C14 SINGLE NONE 3
G6N C12 O8 SINGLE NONE 4
G6N O8 P1 SINGLE NONE 5
G6N O15 P1 DOUBLE NONE 6
G6N C1 O4 SINGLE BEGINDASH 7
G6N P1 O7 SINGLE NONE 8
G6N P1 O13 SINGLE BEGINDASH 9
G6N C5 C6 SINGLE BEGINWEDGE 10
G6N C6 O5 SINGLE NONE 11
G6N O7 C10 SINGLE NONE 12
G6N C5 C1 SINGLE NONE 13
G6N C5 O1 SINGLE NONE 14
G6N C9 C10 SINGLE BEGINWEDGE 15
G6N C1 C2 SINGLE NONE 16
G6N C2 O3 SINGLE BEGINWEDGE 17
G6N C2 C3 SINGLE NONE 18
G6N O2 C9 SINGLE NONE 19
G6N C4 O2 SINGLE BEGINDASH 20
G6N O1 C4 SINGLE NONE 21
G6N C9 C11 SINGLE NONE 22
G6N C11 O9 SINGLE BEGINWEDGE 23
G6N C4 C3 SINGLE NONE 24
G6N C3 N1 SINGLE BEGINDASH 25
G6N C11 C15 SINGLE NONE 26
G6N N1 C7 SINGLE NONE 27
G6N C15 O16 SINGLE BEGINDASH 28
G6N C15 C16 SINGLE NONE 29
G6N C7 O6 DOUBLE NONE 30
G6N C7 C8 SINGLE NONE 31
G6N C16 O10 SINGLE NONE 32
G6N O10 P2 SINGLE NONE 33
G6N O14 P2 DOUBLE NONE 34
G6N P2 O11 SINGLE NONE 35
G6N P2 O12 SINGLE BEGINWEDGE 36
G6N C19 O20 SINGLE BEGINDASH 37
G6N O11 C17 SINGLE NONE 38
G6N C17 C18 SINGLE NONE 39
G6N C19 C18 SINGLE NONE 40
G6N C19 C20 SINGLE NONE 41
G6N C18 O18 SINGLE BEGINWEDGE 42
G6N C20 O19 SINGLE BEGINWEDGE 43
G6N C20 C21 SINGLE NONE 44
G6N C21 O21 SINGLE NONE 45
G6N C14 C23 SINGLE NONE 46
G6N C24 C23 SINGLE NONE 47
G6N C14 O22 SINGLE BEGINWEDGE 48
G6N C23 O23 SINGLE BEGINDASH 49
G6N O24 C24 SINGLE NONE 50
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G6N MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
G6N amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G6N phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
G6N pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G6N C2 S1 1
G6N C4 S1 1
G6N C5 S1 1
G6N C1 S1 1
G6N C3 S1 1
G6N O1 S1 1
G6N N1 F1 1
G6N C7 F1 1
G6N O6 F1 1
G6N C8 F1 1
G6N O7 F2 1
G6N P1 F2 1
G6N O15 F2 1
G6N O8 F2 1
G6N O13 F2 1
G6N O10 F2 2
G6N P2 F2 2
G6N O14 F2 2
G6N O11 F2 2
G6N O12 F2 2
G6N C1 F3 1
G6N C5 F3 1
G6N O1 F3 1
G6N C4 F3 1
G6N C3 F3 1
G6N C2 F3 1
G6N O2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G6N
_pdbe_chem_comp_rdkit_properties.exactmw 783.196
_pdbe_chem_comp_rdkit_properties.amw 783.560
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 25
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 16
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 40
_pdbe_chem_comp_rdkit_properties.NumHBD 16
_pdbe_chem_comp_rdkit_properties.NumHBA 24
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 50
_pdbe_chem_comp_rdkit_properties.NumAtoms 97
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 27
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.957
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 16
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 350.559
_pdbe_chem_comp_rdkit_properties.tpsa 422.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP -8.546
_pdbe_chem_comp_rdkit_properties.CrippenMR 155.923
_pdbe_chem_comp_rdkit_properties.chi0v 24.428
_pdbe_chem_comp_rdkit_properties.chi1v 13.820
_pdbe_chem_comp_rdkit_properties.chi2v 5.199
_pdbe_chem_comp_rdkit_properties.chi3v 5.199
_pdbe_chem_comp_rdkit_properties.chi4v 2.852
_pdbe_chem_comp_rdkit_properties.chi0n 69.640
_pdbe_chem_comp_rdkit_properties.chi1n 32.969
_pdbe_chem_comp_rdkit_properties.chi2n 3.940
_pdbe_chem_comp_rdkit_properties.chi3n 3.940
_pdbe_chem_comp_rdkit_properties.chi4n 1.999
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.910
_pdbe_chem_comp_rdkit_properties.kappa1 12.296
_pdbe_chem_comp_rdkit_properties.kappa2 21.707
_pdbe_chem_comp_rdkit_properties.kappa3 15.213
_pdbe_chem_comp_rdkit_properties.Phi 5.338
#
_pdbe_chem_comp_external_mappings.comp_id G6N
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id G6N
#