data_G7C
#
_chem_comp.id G7C
_chem_comp.name
"[(2~{S},4~{R})-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)-5-[oxidanyl-[(2~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H47 N O24 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-27
_chem_comp.pdbx_modified_date 2022-08-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 783.559
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G7C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7QXE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G7C C2 C1 C 0 1 N N R N N N 6.136 -27.202 -63.132 -0.557 4.547 0.838 C2 G7C 1
G7C C4 C2 C 0 1 N N R N N N 5.565 -25.152 -61.847 0.783 4.648 -1.265 C4 G7C 2
G7C C5 C3 C 0 1 N N R N N N 4.246 -25.823 -61.479 0.484 3.159 -1.468 C5 G7C 3
G7C C6 C4 C 0 1 N N N N N N 7.150 -28.307 -63.372 -1.748 5.142 1.593 C6 G7C 4
G7C C7 C5 C 0 1 N N R N N N 2.099 -28.809 -62.289 -0.094 0.364 0.923 C7 G7C 5
G7C C8 C6 C 0 1 N N S N N N 1.302 -28.638 -63.568 -1.336 -0.528 0.942 C8 G7C 6
G7C C9 C7 C 0 1 N N R N N N 3.061 -30.031 -62.304 1.161 -0.508 1.003 C9 G7C 7
G7C C10 C8 C 0 1 N N N N N N 3.067 -30.698 -60.951 2.404 0.371 0.847 C10 G7C 8
G7C C11 C9 C 0 1 N N N N N N 0.493 -27.361 -63.693 -2.591 0.344 0.862 C11 G7C 9
G7C C12 C10 C 0 1 N N N N N N -3.302 -26.446 -64.756 -7.672 -0.922 0.193 C12 G7C 10
G7C O14 O1 O 0 1 N N N N N N -5.021 -25.228 -65.893 -8.283 -3.012 1.241 O14 G7C 11
G7C C15 C11 C 0 1 N N N N N N 7.722 -32.269 -60.941 7.490 -0.879 0.189 C15 G7C 12
G7C C16 C12 C 0 1 N N S N N N 8.344 -33.347 -61.793 8.191 -2.235 0.094 C16 G7C 13
G7C C17 C13 C 0 1 N N N N N N 9.050 -32.769 -63.026 9.651 -2.027 -0.316 C17 G7C 14
G7C C20 C14 C 0 1 N N N N N N -6.807 -27.326 -66.196 -10.514 -3.417 -0.533 C20 G7C 15
G7C O21 O2 O 0 1 N N N N N N -1.959 -25.980 -61.179 -5.615 0.861 2.023 O21 G7C 16
G7C O22 O3 O 0 1 N N N N N N -1.252 -25.052 -63.551 -5.329 1.034 -0.479 O22 G7C 17
G7C C1 C15 C 0 1 N N S N N N 3.838 -26.940 -62.464 0.265 2.500 -0.103 C1 G7C 18
G7C O1 O4 O 0 1 N N N N N N 4.927 -27.835 -62.649 -0.801 3.163 0.579 O1 G7C 19
G7C C3 C16 C 0 1 N N S N N N 6.660 -26.166 -62.142 -0.372 5.288 -0.489 C3 G7C 20
G7C N1 N1 N 0 1 N N N N N N 3.228 -24.803 -61.325 1.615 2.520 -2.144 N1 G7C 21
G7C O2 O5 O 0 1 N N N N N N 5.923 -24.324 -60.753 0.916 5.286 -2.537 O2 G7C 22
G7C O3 O6 O 0 1 N N N N N N 7.798 -25.500 -62.693 -0.070 6.661 -0.231 O3 G7C 23
G7C O4 O7 O 0 1 N N N N N N 2.698 -27.527 -61.881 -0.070 1.123 -0.287 O4 G7C 24
G7C O5 O8 O 0 1 N N N N N N 4.054 -31.762 -60.937 3.568 -0.456 0.785 O5 G7C 25
G7C O6 O9 O 0 1 N N N N N N -0.545 -27.332 -62.657 -3.746 -0.491 0.761 O6 G7C 26
G7C P1 P1 P 0 1 N N N N N N -1.676 -26.184 -62.647 -5.244 0.091 0.658 P1 G7C 27
G7C O7 O10 O 0 1 N N N N N N -2.996 -26.779 -63.357 -6.277 -1.122 0.428 O7 G7C 28
G7C C13 C17 C 0 1 N N R N N N -4.794 -26.283 -64.957 -8.359 -2.278 0.018 C13 G7C 29
G7C C14 C18 C 0 1 N N S N N N -5.482 -27.557 -65.460 -9.826 -2.061 -0.357 C14 G7C 30
G7C P2 P2 P 0 1 N N N N N N 5.357 -31.556 -60.016 5.056 0.135 0.622 P2 G7C 31
G7C O8 O11 O 0 1 N N N N N N 6.385 -32.674 -60.536 6.101 -1.078 0.458 O8 G7C 32
G7C O9 O12 O 0 1 N N N N N N 6.890 -28.955 -64.615 -1.850 4.529 2.880 O9 G7C 33
G7C O10 O13 O 0 1 N N N N N N 2.704 -31.088 -63.196 1.202 -1.169 2.270 O10 G7C 34
G7C O11 O14 O 0 1 N N N N N N 0.391 -29.737 -63.512 -1.360 -1.287 2.152 O11 G7C 35
G7C O12 O15 O 0 1 N N N N N N 9.249 -34.094 -60.972 8.142 -2.887 1.364 O12 G7C 36
G7C O17 O16 O 0 1 N N N N N N -5.716 -28.407 -64.341 -9.902 -1.327 -1.581 O17 G7C 37
G7C O20 O17 O 0 1 N N N N N N 4.949 -31.865 -58.602 5.437 0.998 1.927 O20 G7C 38
G7C O23 O18 O 0 1 N N N N N N 5.979 -30.219 -60.330 5.114 1.002 -0.577 O23 G7C 39
G7C C22 C19 C 0 1 N N N N N N 2.287 -24.857 -60.370 1.422 1.400 -2.868 C22 G7C 40
G7C C23 C20 C 0 1 N N N N N N 1.085 -23.993 -60.605 2.586 0.742 -3.564 C23 G7C 41
G7C O24 O19 O 0 1 N N N N N N 2.385 -25.599 -59.386 0.312 0.920 -2.959 O24 G7C 42
G7C H1 H1 H 0 1 N N N N N N 5.932 -26.699 -64.089 0.345 4.650 1.441 H1 G7C 43
G7C H2 H2 H 0 1 N N N N N N 5.405 -24.538 -62.746 1.709 4.760 -0.702 H2 G7C 44
G7C H3 H3 H 0 1 N N N N N N 4.393 -26.303 -60.500 -0.414 3.047 -2.075 H3 G7C 45
G7C H4 H4 H 0 1 N N N N N N 7.084 -29.044 -62.558 -1.602 6.216 1.712 H4 G7C 46
G7C H5 H5 H 0 1 N N N N N N 8.161 -27.874 -63.393 -2.663 4.960 1.030 H5 G7C 47
G7C H6 H6 H 0 1 N N N N N N 1.354 -29.048 -61.516 -0.120 1.042 1.777 H6 G7C 48
G7C H7 H7 H 0 1 N N N N N N 1.974 -28.733 -64.434 -1.310 -1.206 0.088 H7 G7C 49
G7C H8 H8 H 0 1 N N N N N N 4.076 -29.672 -62.531 1.139 -1.251 0.206 H8 G7C 50
G7C H9 H9 H 0 1 N N N N N N 3.317 -29.956 -60.178 2.323 0.954 -0.070 H9 G7C 51
G7C H10 H10 H 0 1 N N N N N N 2.072 -31.119 -60.746 2.482 1.045 1.701 H10 G7C 52
G7C H11 H11 H 0 1 N N N N N N 1.158 -26.493 -63.570 -2.664 0.959 1.759 H11 G7C 53
G7C H12 H12 H 0 1 N N N N N N 0.021 -27.323 -64.686 -2.531 0.988 -0.016 H12 G7C 54
G7C H13 H13 H 0 1 N N N N N N -2.937 -27.254 -65.407 -8.112 -0.399 1.042 H13 G7C 55
G7C H14 H14 H 0 1 N N N N N N -2.798 -25.505 -65.021 -7.806 -0.327 -0.710 H14 G7C 56
G7C H15 H15 H 0 1 N N N N N N -4.597 -24.435 -65.586 -8.708 -2.572 1.991 H15 G7C 57
G7C H16 H16 H 0 1 N N N N N N 8.342 -32.107 -60.047 7.936 -0.295 0.995 H16 G7C 58
G7C H17 H17 H 0 1 N N N N N N 7.662 -31.335 -61.519 7.604 -0.343 -0.753 H17 G7C 59
G7C H18 H18 H 0 1 N N N N N N 7.542 -34.012 -62.144 7.689 -2.852 -0.651 H18 G7C 60
G7C H19 H19 H 0 1 N N N N N N 9.834 -32.112 -62.713 10.153 -1.410 0.429 H19 G7C 61
G7C H22 H22 H 0 1 N N N N N N -6.641 -26.688 -67.039 -10.535 -3.940 0.423 H22 G7C 62
G7C H25 H25 H 0 1 N N N N N N -1.827 -25.066 -60.955 -5.580 0.303 2.811 H25 G7C 63
G7C H26 H26 H 0 1 N N N N N N 3.572 -26.472 -63.423 1.178 2.576 0.488 H26 G7C 64
G7C H27 H27 H 0 1 N N N N N N 6.935 -26.676 -61.207 -1.288 5.219 -1.076 H27 G7C 65
G7C H28 H28 H 0 1 N N N N N N 3.227 -24.027 -61.956 2.503 2.903 -2.071 H28 G7C 66
G7C H29 H29 H 0 1 N N N N N N 5.227 -23.700 -60.587 1.106 6.232 -2.484 H29 G7C 67
G7C H30 H30 H 0 1 N N N N N N 8.120 -24.856 -62.073 -0.758 7.128 0.263 H30 G7C 68
G7C H31 H31 H 0 1 N N N N N N -5.243 -26.014 -63.990 -7.861 -2.838 -0.774 H31 G7C 69
G7C H32 H32 H 0 1 N N N N N N -4.794 -28.058 -66.157 -10.325 -1.501 0.434 H32 G7C 70
G7C H33 H33 H 0 1 N N N N N N 7.530 -29.643 -64.754 -2.585 4.859 3.415 H33 G7C 71
G7C H34 H34 H 0 1 N N N N N N 3.347 -31.785 -63.135 1.223 -0.568 3.027 H34 G7C 72
G7C H35 H35 H 0 1 N N N N N N 0.878 -30.549 -63.433 -1.385 -0.747 2.954 H35 G7C 73
G7C H36 H36 H 0 1 N N N N N N 8.783 -34.438 -60.219 8.571 -2.394 2.077 H36 G7C 74
G7C H37 H37 H 0 1 N N N N N N -4.899 -28.555 -63.879 -9.478 -1.767 -2.331 H37 G7C 75
G7C H38 H38 H 0 1 N N N N N N 5.150 -31.123 -58.044 5.419 0.493 2.751 H38 G7C 76
G7C H39 H39 H 0 1 N N N N N N 0.362 -24.140 -59.789 3.335 0.453 -2.826 H39 G7C 77
G7C H40 H40 H 0 1 N N N N N N 1.393 -22.937 -60.637 2.238 -0.144 -4.095 H40 G7C 78
G7C H41 H41 H 0 1 N N N N N N 0.618 -24.267 -61.562 3.027 1.442 -4.274 H41 G7C 79
G7C C18 C21 C 0 1 N N N N N N ? ? ? -11.945 -3.203 -1.028 C18 G7C 80
G7C C21 C22 C 0 1 N N N N N N ? ? ? 10.352 -3.384 -0.412 C21 G7C 81
G7C C25 C25 C 0 1 N N N N N N ? ? ? 11.811 -3.176 -0.822 C25 G7C 82
G7C O13 O20 O 0 1 N N N N N N ? ? ? -9.791 -4.197 -1.487 O13 G7C 83
G7C O16 O21 O 0 1 N N N N N N ? ? ? -12.624 -4.459 -1.081 O16 G7C 84
G7C O19 O22 O 0 1 N N N N N N ? ? ? 9.700 -1.375 -1.587 O19 G7C 85
G7C O26 O26 O 0 1 N N N N N N ? ? ? 10.302 -4.036 0.859 O26 G7C 86
G7C O29 O29 O 0 1 N N N N N N ? ? ? 12.435 -4.445 -1.024 O29 G7C 87
G7C H20 H20 H 0 1 N N N N N N ? ? ? -12.470 -2.534 -0.345 H20 G7C 88
G7C H21 H21 H 0 1 N N N N N N ? ? ? -11.923 -2.760 -2.024 H21 G7C 89
G7C H23 H23 H 0 1 N N N N N N ? ? ? 9.849 -4.001 -1.156 H23 G7C 90
G7C H24 H24 H 0 1 N N N N N N ? ? ? 11.850 -2.600 -1.747 H24 G7C 91
G7C H42 H42 H 0 1 N N N N N N ? ? ? 12.336 -2.634 -0.035 H42 G7C 92
G7C H43 H43 H 0 1 N N N N N N ? ? ? -9.732 -3.792 -2.363 H43 G7C 93
G7C H44 H44 H 0 1 N N N N N N ? ? ? -13.539 -4.399 -1.388 H44 G7C 94
G7C H45 H45 H 0 1 N N N N N N ? ? ? 9.271 -1.868 -2.299 H45 G7C 95
G7C H46 H46 H 0 1 N N N N N N ? ? ? 10.731 -3.542 1.571 H46 G7C 96
G7C H47 H47 H 0 1 N N N N N N ? ? ? 13.364 -4.390 -1.286 H47 G7C 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G7C C20 C14 SING N N 1
G7C O14 C13 SING N N 2
G7C C14 C13 SING N N 3
G7C C14 O17 SING N N 4
G7C C13 C12 SING N N 5
G7C C12 O7 SING N N 6
G7C O9 C6 SING N N 7
G7C C11 C8 SING N N 8
G7C C11 O6 SING N N 9
G7C C8 O11 SING N N 10
G7C C8 C7 SING N N 11
G7C O22 P1 DOUB N N 12
G7C C6 C2 SING N N 13
G7C O7 P1 SING N N 14
G7C O10 C9 SING N N 15
G7C C2 O1 SING N N 16
G7C C2 C3 SING N N 17
G7C C17 C16 SING N N 18
G7C O3 C3 SING N N 19
G7C O6 P1 SING N N 20
G7C O1 C1 SING N N 21
G7C P1 O21 SING N N 22
G7C C1 O4 SING N N 23
G7C C1 C5 SING N N 24
G7C C9 C7 SING N N 25
G7C C9 C10 SING N N 26
G7C C7 O4 SING N N 27
G7C C3 C4 SING N N 28
G7C C4 C5 SING N N 29
G7C C4 O2 SING N N 30
G7C C16 O12 SING N N 31
G7C C16 C15 SING N N 32
G7C C5 N1 SING N N 33
G7C N1 C22 SING N N 34
G7C C10 O5 SING N N 35
G7C C15 O8 SING N N 36
G7C O5 P2 SING N N 37
G7C C23 C22 SING N N 38
G7C O8 P2 SING N N 39
G7C C22 O24 DOUB N N 40
G7C O23 P2 DOUB N N 41
G7C P2 O20 SING N N 42
G7C C2 H1 SING N N 43
G7C C4 H2 SING N N 44
G7C C5 H3 SING N N 45
G7C C6 H4 SING N N 46
G7C C6 H5 SING N N 47
G7C C7 H6 SING N N 48
G7C C8 H7 SING N N 49
G7C C9 H8 SING N N 50
G7C C10 H9 SING N N 51
G7C C10 H10 SING N N 52
G7C C11 H11 SING N N 53
G7C C11 H12 SING N N 54
G7C C12 H13 SING N N 55
G7C C12 H14 SING N N 56
G7C O14 H15 SING N N 57
G7C C15 H16 SING N N 58
G7C C15 H17 SING N N 59
G7C C16 H18 SING N N 60
G7C C17 H19 SING N N 61
G7C C20 H22 SING N N 62
G7C O21 H25 SING N N 63
G7C C1 H26 SING N N 64
G7C C3 H27 SING N N 65
G7C N1 H28 SING N N 66
G7C O2 H29 SING N N 67
G7C O3 H30 SING N N 68
G7C C13 H31 SING N N 69
G7C C14 H32 SING N N 70
G7C O9 H33 SING N N 71
G7C O10 H34 SING N N 72
G7C O11 H35 SING N N 73
G7C O12 H36 SING N N 74
G7C O17 H37 SING N N 75
G7C O20 H38 SING N N 76
G7C C23 H39 SING N N 77
G7C C23 H40 SING N N 78
G7C C23 H41 SING N N 79
G7C C18 C20 SING N N 80
G7C C21 C17 SING N N 81
G7C C25 C21 SING N N 82
G7C O13 C20 SING N N 83
G7C O16 C18 SING N N 84
G7C O19 C17 SING N N 85
G7C O26 C21 SING N N 86
G7C C25 O29 SING N N 87
G7C C18 H20 SING N N 88
G7C C18 H21 SING N N 89
G7C C21 H23 SING N N 90
G7C C25 H24 SING N N 91
G7C C25 H42 SING N N 92
G7C O13 H43 SING N N 93
G7C O16 H44 SING N N 94
G7C O19 H45 SING N N 95
G7C O26 H46 SING N N 96
G7C O29 H47 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G7C InChI InChI 1.06 InChI=1S/C23H47NO24P2/c1-9(28)24-17-21(38)20(37)16(4-27)47-23(17)48-22(14(33)7-45-49(39,40)43-5-12(31)18(35)10(29)2-25)15(34)8-46-50(41,42)44-6-13(32)19(36)11(30)3-26/h10-23,25-27,29-38H,2-8H2,1H3,(H,24,28)(H,39,40)(H,41,42)/t10?,11?,12-,13+,14+,15-,16-,17-,18+,19?,20-,21-,22+,23+/m1/s1
G7C InChIKey InChI 1.06 UQOCSXCRLULBKU-APIFBWIWSA-N
G7C SMILES_CANONICAL CACTVS 3.385 CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@@H]([C@@H](O)CO[P](O)(=O)OC[C@@H](O)[C@@H](O)C(O)CO)[C@H](O)CO[P](O)(=O)OC[C@H](O)C(O)C(O)CO
G7C SMILES CACTVS 3.385 CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]([CH](O)CO[P](O)(=O)OC[CH](O)[CH](O)C(O)CO)[CH](O)CO[P](O)(=O)OC[CH](O)C(O)C(O)CO
G7C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC([C@@H](COP(=O)(O)OC[C@@H]([C@H]([C@H](CO)O)O)O)O)[C@H](COP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)CO)O)O
G7C SMILES "OpenEye OEToolkits" 2.0.7 CC(=O)NC1C(C(C(OC1OC(C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)CO)O)O
#
_pdbx_chem_comp_identifier.comp_id G7C
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(2~{S},4~{R})-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)-5-[oxidanyl-[(2~{S},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G7C 'Create component' 2022-01-27 PDBE
G7C 'Modify descriptor' 2022-08-22 RCSB
G7C 'Initial release' 2022-08-31 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G7C C2 C 3.654 4.852 1
G7C C4 C 6.252 4.857 2
G7C C5 C 6.254 3.357 3
G7C C6 C 2.353 5.600 4
G7C C7 C 3.663 0.352 5
G7C C8 C 3.666 -1.148 6
G7C C9 C 2.362 1.100 7
G7C C10 C 1.064 0.347 8
G7C C11 C 2.368 -1.900 9
G7C C12 C -1.525 -4.158 10
G7C O14 O -2.819 -6.411 11
G7C C15 C -4.132 0.337 12
G7C C16 C -5.429 -0.416 13
G7C C17 C -6.730 0.332 14
G7C C20 C -5.420 -4.916 15
G7C O21 O 1.826 -5.450 16
G7C O22 O 0.321 -2.855 17
G7C C1 C 4.957 2.605 18
G7C O1 O 3.656 3.352 19
G7C C3 C 4.951 5.605 20
G7C N1 N 7.555 2.610 21
G7C O2 O 7.549 5.610 22
G7C O3 O 4.948 7.105 23
G7C O4 O 4.960 1.105 24
G7C O5 O -0.236 1.094 25
G7C O6 O 2.371 -3.400 26
G7C P1 P 1.074 -4.153 27
G7C O7 O -0.224 -4.905 28
G7C C13 C -2.822 -4.911 29
G7C C14 C -4.123 -4.163 30
G7C P2 P -1.534 0.342 31
G7C O8 O -2.831 -0.411 32
G7C O9 O 2.350 7.100 33
G7C O10 O 2.359 2.600 34
G7C O11 O 4.966 -1.895 35
G7C O12 O -5.426 -1.916 36
G7C O17 O -4.126 -2.663 37
G7C O20 O -0.781 -0.955 38
G7C O23 O -2.286 1.640 39
G7C C22 C 8.853 3.362 40
G7C C23 C 10.153 2.615 41
G7C O24 O 8.850 4.862 42
G7C C18 C -6.721 -4.168 43
G7C C21 C -8.027 -0.421 44
G7C C25 C -9.328 0.326 45
G7C O13 O -5.417 -6.416 46
G7C O16 O -8.018 -4.921 47
G7C O19 O -6.733 1.832 48
G7C O26 O -8.024 -1.921 49
G7C O29 O -10.625 -0.426 50
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G7C C20 C14 SINGLE NONE 1
G7C C13 O14 SINGLE BEGINWEDGE 2
G7C C14 C13 SINGLE NONE 3
G7C C14 O17 SINGLE BEGINDASH 4
G7C C13 C12 SINGLE NONE 5
G7C C12 O7 SINGLE NONE 6
G7C O9 C6 SINGLE NONE 7
G7C C11 C8 SINGLE NONE 8
G7C C11 O6 SINGLE NONE 9
G7C C8 O11 SINGLE BEGINWEDGE 10
G7C C8 C7 SINGLE NONE 11
G7C O22 P1 DOUBLE NONE 12
G7C C2 C6 SINGLE BEGINDASH 13
G7C O7 P1 SINGLE NONE 14
G7C C9 O10 SINGLE BEGINWEDGE 15
G7C C2 O1 SINGLE NONE 16
G7C C2 C3 SINGLE NONE 17
G7C C17 C16 SINGLE NONE 18
G7C C3 O3 SINGLE BEGINWEDGE 19
G7C O6 P1 SINGLE NONE 20
G7C O1 C1 SINGLE NONE 21
G7C P1 O21 SINGLE BEGINWEDGE 22
G7C C1 O4 SINGLE BEGINDASH 23
G7C C1 C5 SINGLE NONE 24
G7C C9 C7 SINGLE NONE 25
G7C C9 C10 SINGLE NONE 26
G7C C7 O4 SINGLE BEGINWEDGE 27
G7C C3 C4 SINGLE NONE 28
G7C C4 C5 SINGLE NONE 29
G7C C4 O2 SINGLE BEGINDASH 30
G7C C16 O12 SINGLE BEGINDASH 31
G7C C16 C15 SINGLE NONE 32
G7C C5 N1 SINGLE BEGINWEDGE 33
G7C N1 C22 SINGLE NONE 34
G7C C10 O5 SINGLE NONE 35
G7C C15 O8 SINGLE NONE 36
G7C O5 P2 SINGLE NONE 37
G7C C23 C22 SINGLE NONE 38
G7C O8 P2 SINGLE NONE 39
G7C C22 O24 DOUBLE NONE 40
G7C O23 P2 DOUBLE NONE 41
G7C P2 O20 SINGLE BEGINDASH 42
G7C C18 C20 SINGLE NONE 43
G7C C21 C17 SINGLE NONE 44
G7C C25 C21 SINGLE NONE 45
G7C C20 O13 SINGLE BEGINDASH 46
G7C O16 C18 SINGLE NONE 47
G7C C17 O19 SINGLE BEGINWEDGE 48
G7C C21 O26 SINGLE BEGINDASH 49
G7C C25 O29 SINGLE NONE 50
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G7C MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
G7C amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G7C phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
G7C pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G7C C2 S1 1
G7C C4 S1 1
G7C C5 S1 1
G7C C1 S1 1
G7C O1 S1 1
G7C C3 S1 1
G7C N1 F1 1
G7C C22 F1 1
G7C O24 F1 1
G7C C23 F1 1
G7C O21 F2 1
G7C P1 F2 1
G7C O22 F2 1
G7C O7 F2 1
G7C O6 F2 1
G7C O5 F2 2
G7C P2 F2 2
G7C O23 F2 2
G7C O8 F2 2
G7C O20 F2 2
G7C C3 F3 1
G7C C2 F3 1
G7C O1 F3 1
G7C C1 F3 1
G7C C5 F3 1
G7C C4 F3 1
G7C O4 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G7C
_pdbe_chem_comp_rdkit_properties.exactmw 783.196
_pdbe_chem_comp_rdkit_properties.amw 783.560
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 25
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 16
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 40
_pdbe_chem_comp_rdkit_properties.NumHBD 16
_pdbe_chem_comp_rdkit_properties.NumHBA 24
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 50
_pdbe_chem_comp_rdkit_properties.NumAtoms 97
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 27
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.957
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 16
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 350.559
_pdbe_chem_comp_rdkit_properties.tpsa 422.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP -8.546
_pdbe_chem_comp_rdkit_properties.CrippenMR 155.923
_pdbe_chem_comp_rdkit_properties.chi0v 24.428
_pdbe_chem_comp_rdkit_properties.chi1v 13.820
_pdbe_chem_comp_rdkit_properties.chi2v 5.199
_pdbe_chem_comp_rdkit_properties.chi3v 5.199
_pdbe_chem_comp_rdkit_properties.chi4v 2.878
_pdbe_chem_comp_rdkit_properties.chi0n 69.640
_pdbe_chem_comp_rdkit_properties.chi1n 32.969
_pdbe_chem_comp_rdkit_properties.chi2n 3.940
_pdbe_chem_comp_rdkit_properties.chi3n 3.940
_pdbe_chem_comp_rdkit_properties.chi4n 2.025
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.910
_pdbe_chem_comp_rdkit_properties.kappa1 12.296
_pdbe_chem_comp_rdkit_properties.kappa2 21.707
_pdbe_chem_comp_rdkit_properties.kappa3 15.213
_pdbe_chem_comp_rdkit_properties.Phi 5.338
#
_pdbe_chem_comp_external_mappings.comp_id G7C
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id G7C
#