data_G84
#
_chem_comp.id G84
_chem_comp.name
O-tert-butyl-N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-threonyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C43 H54 N4 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-07-25
_chem_comp.pdbx_modified_date 2012-08-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 754.911
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G84
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3ZVE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G84 C1 C1 C 0 1 Y N N N N N 7.569 19.588 13.438 9.237 0.646 -0.605 C1 G84 1
G84 C2 C2 C 0 1 Y N N N N N 6.423 19.696 12.659 8.585 -0.562 -0.372 C2 G84 2
G84 C3 C3 C 0 1 N N N N N N -5.943 9.514 16.070 -8.821 4.926 -1.730 C3 G84 3
G84 C4 C4 C 0 1 N N N N N N 5.390 18.994 13.331 7.332 -0.258 0.412 C4 G84 4
G84 C5 C5 C 0 1 N N N N N N -5.430 8.866 14.786 -8.634 5.941 -2.860 C5 G84 5
G84 C6 C6 C 0 1 Y N N N N N 5.950 18.461 14.526 7.317 1.237 0.611 C6 G84 6
G84 C7 C7 C 0 1 Y N N N N N -6.300 11.705 12.493 1.649 2.907 0.282 C7 G84 7
G84 C8 C8 C 0 1 Y N N N N N 7.282 18.849 14.559 8.457 1.753 0.000 C8 G84 8
G84 C9 C9 C 0 1 Y N N N N N -7.109 12.803 12.184 1.657 3.617 1.468 C9 G84 9
G84 C10 C10 C 0 1 Y N N N N N 8.787 20.174 13.066 10.435 0.650 -1.322 C10 G84 10
G84 C11 C11 C 0 1 Y N N N N N -6.538 14.078 12.005 0.491 3.758 2.197 C11 G84 11
G84 C12 C12 C 0 1 N N N N N N 3.507 15.517 17.973 0.616 -5.416 -0.055 C12 G84 12
G84 C13 C13 C 0 1 N N N N N N 3.969 18.874 12.807 6.097 -0.697 -0.379 C13 G84 13
G84 C14 C14 C 0 1 N N N N N N 1.000 12.988 15.865 1.232 -2.898 1.828 C14 G84 14
G84 C15 C15 C 0 1 Y N N N N N 8.825 20.886 11.863 10.961 -0.536 -1.791 C15 G84 15
G84 O15 O15 O 0 1 N N N N N N 3.039 18.341 13.755 4.910 -0.507 0.434 O15 G84 16
G84 C16 C16 C 0 1 Y N N N N N 7.671 20.997 11.068 10.306 -1.731 -1.555 C16 G84 17
G84 C17 C17 C 0 1 N N N N N N 2.521 16.987 13.585 3.730 -0.847 -0.119 C17 G84 18
G84 C18 C18 C 0 1 Y N N N N N 6.455 20.405 11.452 9.121 -1.743 -0.840 C18 G84 19
G84 C19 C19 C 0 1 Y N N N N N 8.139 18.501 15.606 8.690 3.129 0.038 C19 G84 20
G84 O19 O19 O 0 1 N N N N N N 2.790 16.394 12.543 3.694 -1.290 -1.250 O19 G84 21
G84 C20 C20 C 0 1 Y N N N N N 7.623 17.732 16.655 7.795 3.963 0.675 C20 G84 22
G84 C21 C21 C 0 1 Y N N N N N 6.280 17.333 16.637 6.665 3.441 1.280 C21 G84 23
G84 N21 N21 N 0 1 N N N N N N 1.782 16.441 14.560 2.589 -0.697 0.583 N21 G84 24
G84 C22 C22 C 0 1 Y N N N N N 5.432 17.688 15.575 6.427 2.078 1.247 C22 G84 25
G84 C23 C23 C 0 1 N N S N N N 1.219 15.100 14.475 1.319 -1.170 0.026 C23 G84 26
G84 C25 C25 C 0 1 N N R N N N 1.614 14.389 15.779 1.159 -2.663 0.318 C25 G84 27
G84 O27 O27 O 0 1 N N N N N N 3.055 14.307 15.870 -0.105 -3.112 -0.174 O27 G84 28
G84 C29 C29 C 0 1 N N N N N N 3.733 14.236 17.159 -0.040 -4.333 -0.914 C29 G84 29
G84 C31 C31 C 0 1 N N N N N N -0.279 15.203 14.403 0.180 -0.410 0.656 C31 G84 30
G84 N33 N33 N 0 1 N N N N N N -0.945 14.324 13.658 -1.029 -0.393 0.061 N33 G84 31
G84 O35 O35 O 0 1 N N N N N N -0.848 16.081 15.025 0.352 0.185 1.698 O35 G84 32
G84 C37 C37 C 0 1 N N S N N N -2.413 14.374 13.586 -2.102 0.443 0.605 C37 G84 33
G84 C39 C39 C 0 1 N N N N N N -3.011 14.076 14.946 -3.437 -0.131 0.207 C39 G84 34
G84 C41 C41 C 0 1 N N N N N N -2.824 13.307 12.568 -1.972 1.864 0.052 C41 G84 35
G84 C43 C43 C 0 1 N N N N N N 5.222 14.077 16.845 0.787 -4.117 -2.182 C43 G84 36
G84 C45 C45 C 0 1 N N N N N N 3.305 13.027 18.005 -1.455 -4.773 -1.296 C45 G84 37
G84 O47 O47 O 0 1 N N N N N N -2.594 13.116 15.610 -3.488 -1.139 -0.465 O47 G84 38
G84 N49 N49 N 0 1 N N N N N N -3.972 14.901 15.400 -4.575 0.476 0.599 N49 G84 39
G84 C51 C51 C 0 1 Y N N N N N -4.335 13.133 12.451 -0.691 2.482 0.552 C51 G84 40
G84 C53 C53 C 0 1 Y N N N N N -4.913 11.864 12.625 0.475 2.340 -0.177 C53 G84 41
G84 C55 C55 C 0 1 Y N N N N N -5.158 14.228 12.127 -0.683 3.191 1.738 C55 G84 42
G84 C57 C57 C 0 1 N N R N N N -4.621 14.706 16.721 -5.872 -0.140 0.308 C57 G84 43
G84 C59 C59 C 0 1 N N N N N N -4.433 15.996 17.535 -6.192 -1.183 1.381 C59 G84 44
G84 C61 C61 C 0 1 N N S N N N -2.944 16.280 17.825 -7.470 -1.932 0.998 C61 G84 45
G84 C63 C63 C 0 1 N N N N N N -6.107 14.417 16.495 -6.959 0.936 0.303 C63 G84 46
G84 C65 C65 C 0 1 N N N N N N -2.682 17.406 18.792 -7.256 -2.733 -0.268 C65 G84 47
G84 O66 O66 O 0 1 N N N N N N -3.268 18.473 18.790 -7.242 -2.270 -1.388 O66 G84 48
G84 N69 N69 N 0 1 N N N N N N -1.685 17.051 19.609 -7.082 -4.032 0.031 N69 G84 49
G84 C71 C71 C 0 1 N N N N N N -1.032 15.784 19.289 -7.146 -4.259 1.479 C71 G84 50
G84 C73 C73 C 0 1 N N N N N N -2.164 15.129 18.475 -7.815 -2.996 2.066 C73 G84 51
G84 C82 C82 C 0 1 N N N N N N -6.384 13.009 15.948 -6.706 1.910 -0.850 C82 G84 52
G84 C84 C84 C 0 1 N N N N N N -5.875 11.928 16.895 -7.777 2.971 -0.855 C84 G84 53
G84 O86 O86 O 0 1 N N N N N N -5.243 10.742 16.338 -7.758 3.938 -1.785 O86 G84 54
G84 O88 O88 O 0 1 N N N N N N -5.946 12.057 18.121 -8.652 2.950 -0.023 O88 G84 55
G84 H3 H3 H 0 1 N N N N N N -7.016 9.730 15.959 -8.788 5.442 -0.770 H3 G84 56
G84 H3A H3A H 0 1 N N N N N N -5.785 8.821 16.909 -9.785 4.430 -1.843 H3A G84 57
G84 H4 H4 H 0 1 N N N N N N 4.323 18.756 13.211 7.360 -0.765 1.376 H4 G84 58
G84 H5 H5 H 0 1 N N N N N N -5.979 7.931 14.602 -9.431 6.682 -2.818 H5 G84 59
G84 H5A H5A H 0 1 N N N N N N -5.584 9.554 13.941 -7.670 6.437 -2.747 H5A G84 60
G84 H5B H5B H 0 1 N N N N N N -4.357 8.647 14.889 -8.666 5.425 -3.820 H5B G84 61
G84 H7 H7 H 0 1 N N N N N N -6.745 10.731 12.631 2.559 2.801 -0.290 H7 G84 62
G84 H9 H9 H 0 1 N N N N N N -8.176 12.673 12.082 2.575 4.060 1.826 H9 G84 63
G84 H10 H10 H 0 1 N N N N N N 9.666 20.079 13.687 10.950 1.581 -1.509 H10 G84 64
G84 H11 H11 H 0 1 N N N N N N -7.162 14.929 11.776 0.498 4.312 3.124 H11 G84 65
G84 H12 H12 H 0 1 N N N N N N 4.029 15.436 18.938 0.047 -5.544 0.866 H12 G84 66
G84 H12A H12A H 0 0 N N N N N N 3.900 16.380 17.415 0.631 -6.357 -0.606 H12A G84 67
G84 H12B H12B H 0 0 N N N N N N 2.430 15.654 18.149 1.637 -5.120 0.186 H12B G84 68
G84 H13 H13 H 0 1 N N N N N N 3.626 19.880 12.524 6.016 -0.098 -1.286 H13 G84 69
G84 H13A H13A H 0 0 N N N N N N 3.985 18.204 11.934 6.192 -1.749 -0.645 H13A G84 70
G84 H14 H14 H 0 1 N N N N N N 1.304 12.511 16.809 0.375 -2.428 2.310 H14 G84 71
G84 H14A H14A H 0 0 N N N N N N -0.097 13.066 15.830 1.220 -3.969 2.030 H14A G84 72
G84 H14B H14B H 0 0 N N N N N N 1.352 12.381 15.018 2.152 -2.465 2.220 H14B G84 73
G84 H15 H15 H 0 1 N N N N N N 9.745 21.353 11.543 11.887 -0.531 -2.346 H15 G84 74
G84 H16 H16 H 0 1 N N N N N N 7.720 21.550 10.141 10.722 -2.656 -1.925 H16 G84 75
G84 H18 H18 H 0 1 N N N N N N 5.573 20.494 10.835 8.611 -2.677 -0.657 H18 G84 76
G84 H19 H19 H 0 1 N N N N N N 9.172 18.817 15.606 9.570 3.541 -0.433 H19 G84 77
G84 H20 H20 H 0 1 N N N N N N 8.260 17.446 17.479 7.977 5.027 0.703 H20 G84 78
G84 H21 H21 H 0 1 N N N N N N 5.890 16.743 17.453 5.968 4.097 1.778 H21 G84 79
G84 HN21 HN21 H 0 0 N N N N N N 1.609 16.979 15.385 2.608 -0.275 1.456 HN21 G84 80
G84 H22 H22 H 0 1 N N N N N N 4.400 17.371 15.567 5.545 1.672 1.719 H22 G84 81
G84 H23 H23 H 0 1 N N N N N N 1.583 14.558 13.590 1.312 -1.008 -1.052 H23 G84 82
G84 H25 H25 H 0 1 N N N N N N 1.223 14.977 16.622 1.959 -3.217 -0.175 H25 G84 83
G84 HN33 HN33 H 0 0 N N N N N N -0.445 13.626 13.145 -1.189 -0.934 -0.728 HN33 G84 84
G84 H37 H37 H 0 1 N N N N N N -2.772 15.369 13.284 -2.026 0.468 1.692 H37 G84 85
G84 H41 H41 H 0 1 N N N N N N -2.435 13.604 11.583 -1.958 1.830 -1.037 H41 G84 86
G84 H41A H41A H 0 0 N N N N N N -2.391 12.346 12.884 -2.819 2.463 0.386 H41A G84 87
G84 H43 H43 H 0 1 N N N N N N 5.378 13.158 16.262 0.729 -5.006 -2.810 H43 G84 88
G84 H43A H43A H 0 0 N N N N N N 5.568 14.944 16.263 0.396 -3.260 -2.730 H43A G84 89
G84 H43B H43B H 0 0 N N N N N N 5.790 14.016 17.785 1.827 -3.932 -1.911 H43B G84 90
G84 H45 H45 H 0 1 N N N N N N 3.463 12.102 17.430 -2.045 -4.927 -0.393 H45 G84 91
G84 H45A H45A H 0 0 N N N N N N 3.905 12.993 18.926 -1.922 -4.001 -1.908 H45A G84 92
G84 H45B H45B H 0 0 N N N N N N 2.240 13.120 18.264 -1.406 -5.704 -1.861 H45B G84 93
G84 HN49 HN49 H 0 0 N N N N N N -4.258 15.670 14.829 -4.535 1.322 1.073 HN49 G84 94
G84 H53 H53 H 0 1 N N N N N N -4.291 11.013 12.860 0.469 1.786 -1.104 H53 G84 95
G84 H55 H55 H 0 1 N N N N N N -4.713 15.200 11.971 -1.594 3.302 2.308 H55 G84 96
G84 H57 H57 H 0 1 N N N N N N -4.177 13.862 17.269 -5.833 -0.623 -0.668 H57 G84 97
G84 H59 H59 H 0 1 N N N N N N -4.847 16.838 16.961 -5.366 -1.890 1.458 H59 G84 98
G84 H59A H59A H 0 0 N N N N N N -4.964 15.889 18.492 -6.336 -0.686 2.340 H59A G84 99
G84 H61 H61 H 0 1 N N N N N N -2.613 16.499 16.799 -8.297 -1.234 0.872 H61 G84 100
G84 H63 H63 H 0 1 N N N N N N -6.625 14.517 17.460 -7.934 0.467 0.175 H63 G84 101
G84 H63A H63A H 0 0 N N N N N N -6.491 15.148 15.768 -6.938 1.479 1.248 H63A G84 102
G84 HN69 HN69 H 0 0 N N N N N N -1.405 17.615 20.386 -6.934 -4.729 -0.627 HN69 G84 103
G84 H71 H71 H 0 1 N N N N N N -0.103 15.910 18.714 -7.748 -5.141 1.697 H71 G84 104
G84 H71A H71A H 0 0 N N N N N N -0.751 15.205 20.181 -6.142 -4.378 1.887 H71A G84 105
G84 H73 H73 H 0 1 N N N N N N -2.821 14.539 19.131 -7.378 -2.736 3.030 H73 G84 106
G84 H73A H73A H 0 0 N N N N N N -1.750 14.459 17.706 -8.893 -3.129 2.150 H73A G84 107
G84 H82 H82 H 0 1 N N N N N N -7.470 12.886 15.822 -5.731 2.379 -0.722 H82 G84 108
G84 H82A H82A H 0 0 N N N N N N -5.874 12.899 14.979 -6.727 1.368 -1.795 H82A G84 109
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G84 C1 C2 DOUB Y N 1
G84 C1 C8 SING N N 2
G84 C1 C10 SING Y N 3
G84 C2 C4 SING N N 4
G84 C2 C18 SING Y N 5
G84 C3 C5 SING N N 6
G84 C3 O86 SING N N 7
G84 C4 C6 SING N N 8
G84 C4 C13 SING N N 9
G84 C6 C8 DOUB Y N 10
G84 C6 C22 SING Y N 11
G84 C7 C9 DOUB Y N 12
G84 C7 C53 SING Y N 13
G84 C8 C19 SING Y N 14
G84 C9 C11 SING Y N 15
G84 C10 C15 DOUB Y N 16
G84 C11 C55 DOUB Y N 17
G84 C12 C29 SING N N 18
G84 C13 O15 SING N N 19
G84 C14 C25 SING N N 20
G84 C15 C16 SING Y N 21
G84 O15 C17 SING N N 22
G84 C16 C18 DOUB Y N 23
G84 C17 O19 DOUB N N 24
G84 C17 N21 SING N N 25
G84 C19 C20 DOUB Y N 26
G84 C20 C21 SING Y N 27
G84 C21 C22 DOUB Y N 28
G84 N21 C23 SING N N 29
G84 C23 C25 SING N N 30
G84 C23 C31 SING N N 31
G84 C25 O27 SING N N 32
G84 O27 C29 SING N N 33
G84 C29 C43 SING N N 34
G84 C29 C45 SING N N 35
G84 C31 N33 SING N N 36
G84 C31 O35 DOUB N N 37
G84 N33 C37 SING N N 38
G84 C37 C39 SING N N 39
G84 C37 C41 SING N N 40
G84 C39 O47 DOUB N N 41
G84 C39 N49 SING N N 42
G84 C41 C51 SING N N 43
G84 N49 C57 SING N N 44
G84 C51 C53 DOUB Y N 45
G84 C51 C55 SING Y N 46
G84 C57 C59 SING N N 47
G84 C57 C63 SING N N 48
G84 C59 C61 SING N N 49
G84 C61 C65 SING N N 50
G84 C61 C73 SING N N 51
G84 C63 C82 SING N N 52
G84 C65 O66 DOUB N N 53
G84 C65 N69 SING N N 54
G84 N69 C71 SING N N 55
G84 C71 C73 SING N N 56
G84 C82 C84 SING N N 57
G84 C84 O86 SING N N 58
G84 C84 O88 DOUB N N 59
G84 C3 H3 SING N N 60
G84 C3 H3A SING N N 61
G84 C4 H4 SING N N 62
G84 C5 H5 SING N N 63
G84 C5 H5A SING N N 64
G84 C5 H5B SING N N 65
G84 C7 H7 SING N N 66
G84 C9 H9 SING N N 67
G84 C10 H10 SING N N 68
G84 C11 H11 SING N N 69
G84 C12 H12 SING N N 70
G84 C12 H12A SING N N 71
G84 C12 H12B SING N N 72
G84 C13 H13 SING N N 73
G84 C13 H13A SING N N 74
G84 C14 H14 SING N N 75
G84 C14 H14A SING N N 76
G84 C14 H14B SING N N 77
G84 C15 H15 SING N N 78
G84 C16 H16 SING N N 79
G84 C18 H18 SING N N 80
G84 C19 H19 SING N N 81
G84 C20 H20 SING N N 82
G84 C21 H21 SING N N 83
G84 N21 HN21 SING N N 84
G84 C22 H22 SING N N 85
G84 C23 H23 SING N N 86
G84 C25 H25 SING N N 87
G84 N33 HN33 SING N N 88
G84 C37 H37 SING N N 89
G84 C41 H41 SING N N 90
G84 C41 H41A SING N N 91
G84 C43 H43 SING N N 92
G84 C43 H43A SING N N 93
G84 C43 H43B SING N N 94
G84 C45 H45 SING N N 95
G84 C45 H45A SING N N 96
G84 C45 H45B SING N N 97
G84 N49 HN49 SING N N 98
G84 C53 H53 SING N N 99
G84 C55 H55 SING N N 100
G84 C57 H57 SING N N 101
G84 C59 H59 SING N N 102
G84 C59 H59A SING N N 103
G84 C61 H61 SING N N 104
G84 C63 H63 SING N N 105
G84 C63 H63A SING N N 106
G84 N69 HN69 SING N N 107
G84 C71 H71 SING N N 108
G84 C71 H71A SING N N 109
G84 C73 H73 SING N N 110
G84 C73 H73A SING N N 111
G84 C82 H82 SING N N 112
G84 C82 H82A SING N N 113
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G84 InChI InChI 1.03 InChI=1S/C43H54N4O8/c1-6-53-37(48)21-20-30(25-29-22-23-44-39(29)49)45-40(50)36(24-28-14-8-7-9-15-28)46-41(51)38(27(2)55-43(3,4)5)47-42(52)54-26-35-33-18-12-10-16-31(33)32-17-11-13-19-34(32)35/h7-19,27,29-30,35-36,38H,6,20-26H2,1-5H3,(H,44,49)(H,45,50)(H,46,51)(H,47,52)/t27-,29+,30-,36+,38+/m1/s1
G84 InChIKey InChI 1.03 KZMJRFUAZFUTII-YAPRVMGASA-N
G84 SMILES ACDLabs 12.01 O=C(OCC3c1ccccc1c2ccccc23)NC(C(=O)NC(C(=O)NC(CC4C(=O)NCC4)CCC(=O)OCC)Cc5ccccc5)C(OC(C)(C)C)C
G84 SMILES_CANONICAL CACTVS 3.370 CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](NC(=O)OCC3c4ccccc4c5ccccc35)[C@@H](C)OC(C)(C)C
G84 SMILES CACTVS 3.370 CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](NC(=O)OCC3c4ccccc4c5ccccc35)[CH](C)OC(C)(C)C
G84 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H]([C@@H](C)OC(C)(C)C)NC(=O)OCC3c4ccccc4-c5c3cccc5
G84 SMILES "OpenEye OEToolkits" 1.7.2 CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(C(C)OC(C)(C)C)NC(=O)OCC3c4ccccc4-c5c3cccc5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G84 "SYSTEMATIC NAME" ACDLabs 12.01 O-tert-butyl-N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-threonyl-N-[(1R)-4-ethoxy-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}butyl]-L-phenylalaninamide
G84 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "ethyl (4R)-4-[[(2S)-2-[[(2S,3R)-2-(9H-fluoren-9-ylmethoxycarbonylamino)-3-[(2-methylpropan-2-yl)oxy]butanoyl]amino]-3-phenyl-propanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate"
#
_pdbx_chem_comp_audit.comp_id G84
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2011-07-25
_pdbx_chem_comp_audit.processing_site EBI
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G84 C1 C 7.541 -10.316 1
G84 C2 C 8.005 -8.889 2
G84 C3 C 14.585 9.993 3
G84 C4 C 6.791 -8.007 4
G84 C5 C 14.585 11.493 5
G84 C6 C 5.577 -8.889 6
G84 C7 C 15.884 3.243 7
G84 C8 C 6.041 -10.316 8
G84 C9 C 17.183 2.493 9
G84 C10 C 8.569 -11.493 10
G84 C11 C 17.183 0.993 11
G84 C12 C 5.492 1.743 12
G84 C13 C 6.791 -6.507 13
G84 C14 C 6.791 -2.007 14
G84 C15 C 10.099 -11.180 15
G84 O15 O 8.090 -5.757 16
G84 C16 C 10.582 -9.694 17
G84 C17 C 8.090 -4.257 18
G84 C18 C 9.528 -8.541 19
G84 C19 C 5.014 -11.493 20
G84 O19 O 6.791 -3.507 21
G84 C20 C 3.483 -11.180 22
G84 C21 C 3.000 -9.694 23
G84 N21 N 9.389 -3.507 24
G84 C22 C 4.054 -8.541 25
G84 C23 C 9.389 -2.007 26
G84 C25 C 8.090 -1.257 27
G84 O27 O 8.090 0.243 28
G84 C29 C 6.791 0.993 29
G84 C31 C 10.688 -1.257 30
G84 N33 N 10.688 0.243 31
G84 O35 O 11.987 -2.007 32
G84 C37 C 11.987 0.993 33
G84 C39 C 11.987 2.493 34
G84 C41 C 13.286 0.243 35
G84 C43 C 7.541 2.292 36
G84 C45 C 6.041 -0.306 37
G84 O47 O 13.286 3.243 38
G84 N49 N 10.688 3.243 39
G84 C51 C 14.585 0.993 40
G84 C53 C 14.585 2.493 41
G84 C55 C 15.884 0.243 42
G84 C57 C 10.688 4.743 43
G84 C59 C 9.389 5.493 44
G84 C61 C 9.389 6.993 45
G84 C63 C 11.987 5.493 46
G84 C65 C 8.176 7.874 47
G84 O66 O 6.749 7.411 48
G84 N69 N 8.639 9.301 49
G84 C71 C 10.139 9.301 50
G84 C73 C 10.603 7.874 51
G84 C82 C 11.987 6.993 52
G84 C84 C 13.286 7.743 53
G84 O86 O 13.286 9.243 54
G84 O88 O 14.585 6.993 55
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G84 C1 C2 SINGLE NONE 1
G84 C1 C8 SINGLE NONE 2
G84 C1 C10 DOUBLE NONE 3
G84 C2 C4 SINGLE NONE 4
G84 C2 C18 DOUBLE NONE 5
G84 C3 C5 SINGLE NONE 6
G84 C3 O86 SINGLE NONE 7
G84 C4 C6 SINGLE NONE 8
G84 C4 C13 SINGLE NONE 9
G84 C6 C8 DOUBLE NONE 10
G84 C6 C22 SINGLE NONE 11
G84 C7 C9 DOUBLE NONE 12
G84 C7 C53 SINGLE NONE 13
G84 C8 C19 SINGLE NONE 14
G84 C9 C11 SINGLE NONE 15
G84 C10 C15 SINGLE NONE 16
G84 C11 C55 DOUBLE NONE 17
G84 C12 C29 SINGLE NONE 18
G84 C13 O15 SINGLE NONE 19
G84 C25 C14 SINGLE BEGINWEDGE 20
G84 C15 C16 DOUBLE NONE 21
G84 O15 C17 SINGLE NONE 22
G84 C16 C18 SINGLE NONE 23
G84 C17 O19 DOUBLE NONE 24
G84 C17 N21 SINGLE NONE 25
G84 C19 C20 DOUBLE NONE 26
G84 C20 C21 SINGLE NONE 27
G84 C21 C22 DOUBLE NONE 28
G84 C23 N21 SINGLE BEGINWEDGE 29
G84 C23 C25 SINGLE NONE 30
G84 C23 C31 SINGLE NONE 31
G84 C25 O27 SINGLE NONE 32
G84 O27 C29 SINGLE NONE 33
G84 C29 C43 SINGLE NONE 34
G84 C29 C45 SINGLE NONE 35
G84 C31 N33 SINGLE NONE 36
G84 C31 O35 DOUBLE NONE 37
G84 N33 C37 SINGLE NONE 38
G84 C37 C39 SINGLE NONE 39
G84 C37 C41 SINGLE BEGINDASH 40
G84 C39 O47 DOUBLE NONE 41
G84 C39 N49 SINGLE NONE 42
G84 C41 C51 SINGLE NONE 43
G84 N49 C57 SINGLE NONE 44
G84 C51 C53 DOUBLE NONE 45
G84 C51 C55 SINGLE NONE 46
G84 C57 C59 SINGLE BEGINWEDGE 47
G84 C57 C63 SINGLE NONE 48
G84 C61 C59 SINGLE BEGINWEDGE 49
G84 C61 C65 SINGLE NONE 50
G84 C61 C73 SINGLE NONE 51
G84 C63 C82 SINGLE NONE 52
G84 C65 O66 DOUBLE NONE 53
G84 C65 N69 SINGLE NONE 54
G84 N69 C71 SINGLE NONE 55
G84 C71 C73 SINGLE NONE 56
G84 C82 C84 SINGLE NONE 57
G84 C84 O86 SINGLE NONE 58
G84 C84 O88 DOUBLE NONE 59
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G84 MurckoScaffold S1 scaffold 'O=C(CNC(=O)OCC1c2ccccc2-c2ccccc21)N[C@@H](Cc1ccccc1)C(=O)NCC[C@@H]1CCNC1=O' InChI=1S/C32H34N4O5/c37-29(19-35-32(40)41-20-27-25-12-6-4-10-23(25)24-11-5-7-13-26(24)27)36-28(18-21-8-2-1-3-9-21)31(39)34-17-15-22-14-16-33-30(22)38/h1-13,22,27-28H,14-20H2,(H,33,38)(H,34,39)(H,35,40)(H,36,37)/t22-,28-/m0/s1 UPDRDBTXBBLYDG-DWACAAAGSA-N
G84 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G84 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
G84 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G84 C1 S1 1
G84 C2 S1 1
G84 C4 S1 1
G84 C6 S1 1
G84 C7 S1 1
G84 C8 S1 1
G84 C9 S1 1
G84 C10 S1 1
G84 C11 S1 1
G84 C13 S1 1
G84 C15 S1 1
G84 O15 S1 1
G84 C16 S1 1
G84 C17 S1 1
G84 C18 S1 1
G84 C19 S1 1
G84 O19 S1 1
G84 C20 S1 1
G84 C21 S1 1
G84 N21 S1 1
G84 C22 S1 1
G84 C23 S1 1
G84 C31 S1 1
G84 N33 S1 1
G84 O35 S1 1
G84 C37 S1 1
G84 C39 S1 1
G84 C41 S1 1
G84 O47 S1 1
G84 N49 S1 1
G84 C51 S1 1
G84 C53 S1 1
G84 C55 S1 1
G84 C57 S1 1
G84 C59 S1 1
G84 C61 S1 1
G84 C65 S1 1
G84 O66 S1 1
G84 N69 S1 1
G84 C71 S1 1
G84 C73 S1 1
G84 N33 F1 1
G84 C31 F1 1
G84 O35 F1 1
G84 C23 F1 1
G84 N49 F1 2
G84 C39 F1 2
G84 O47 F1 2
G84 C37 F1 2
G84 N69 F1 3
G84 C65 F1 3
G84 O66 F1 3
G84 C61 F1 3
G84 O35 F2 1
G84 C31 F2 1
G84 C23 F2 1
G84 N21 F2 1
G84 O47 F2 2
G84 C39 F2 2
G84 C37 F2 2
G84 N33 F2 2
G84 C1 F3 1
G84 C2 F3 1
G84 C18 F3 1
G84 C16 F3 1
G84 C15 F3 1
G84 C10 F3 1
G84 C6 F3 2
G84 C8 F3 2
G84 C19 F3 2
G84 C20 F3 2
G84 C21 F3 2
G84 C22 F3 2
G84 C7 F3 3
G84 C9 F3 3
G84 C11 F3 3
G84 C55 F3 3
G84 C51 F3 3
G84 C53 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id G84
_pdbe_chem_comp_rdkit_properties.exactmw 754.394
_pdbe_chem_comp_rdkit_properties.amw 754.925
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 55
_pdbe_chem_comp_rdkit_properties.NumAtoms 109
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.465
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.labuteASA 399.106
_pdbe_chem_comp_rdkit_properties.tpsa 161.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.635
_pdbe_chem_comp_rdkit_properties.CrippenMR 205.781
_pdbe_chem_comp_rdkit_properties.chi0v 26.555
_pdbe_chem_comp_rdkit_properties.chi1v 14.034
_pdbe_chem_comp_rdkit_properties.chi2v 5.836
_pdbe_chem_comp_rdkit_properties.chi3v 5.836
_pdbe_chem_comp_rdkit_properties.chi4v 3.793
_pdbe_chem_comp_rdkit_properties.chi0n 80.555
_pdbe_chem_comp_rdkit_properties.chi1n 40.823
_pdbe_chem_comp_rdkit_properties.chi2n 5.836
_pdbe_chem_comp_rdkit_properties.chi3n 5.836
_pdbe_chem_comp_rdkit_properties.chi4n 3.793
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.230
_pdbe_chem_comp_rdkit_properties.kappa1 10.192
_pdbe_chem_comp_rdkit_properties.kappa2 18.883
_pdbe_chem_comp_rdkit_properties.kappa3 11.392
_pdbe_chem_comp_rdkit_properties.Phi 3.499
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G84 UniChem PDBe G84
G84 UniChem ZINC ZINC000098208925
G84 UniChem PubChem 137349408
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G84 C1 -4.590 2.991 4.313 ETKDGv3 1
G84 C2 -3.161 2.770 4.202 ETKDGv3 2
G84 C3 7.639 2.861 -3.912 ETKDGv3 3
G84 C4 -2.854 2.076 2.906 ETKDGv3 4
G84 C5 7.285 3.179 -5.356 ETKDGv3 5
G84 C6 -4.242 1.987 2.304 ETKDGv3 6
G84 C7 5.278 -1.825 -4.679 ETKDGv3 7
G84 C8 -5.192 2.479 3.101 ETKDGv3 8
G84 C9 5.403 -0.519 -4.941 ETKDGv3 9
G84 C10 -5.137 3.597 5.370 ETKDGv3 10
G84 C11 4.226 0.369 -4.849 ETKDGv3 11
G84 C12 -4.537 -2.006 -0.597 ETKDGv3 12
G84 C13 -2.252 0.688 3.154 ETKDGv3 13
G84 C14 -1.997 -5.536 -0.546 ETKDGv3 14
G84 C15 -4.228 4.045 6.457 ETKDGv3 15
G84 O15 -2.020 0.032 1.913 ETKDGv3 16
G84 C16 -2.897 3.846 6.359 ETKDGv3 17
G84 C17 -1.593 -1.295 1.829 ETKDGv3 18
G84 C18 -2.323 3.173 5.163 ETKDGv3 19
G84 C19 -6.609 2.496 2.693 ETKDGv3 20
G84 O19 -1.326 -1.948 2.875 ETKDGv3 21
G84 C20 -6.935 2.006 1.485 ETKDGv3 22
G84 C21 -5.880 1.476 0.580 ETKDGv3 23
G84 N21 -1.475 -1.905 0.539 ETKDGv3 24
G84 C22 -4.592 1.474 0.963 ETKDGv3 25
G84 C23 -1.145 -3.318 0.336 ETKDGv3 26
G84 C25 -2.324 -4.048 -0.353 ETKDGv3 27
G84 O27 -3.467 -3.945 0.489 ETKDGv3 28
G84 C29 -4.663 -3.476 -0.138 ETKDGv3 29
G84 C31 0.136 -3.405 -0.452 ETKDGv3 30
G84 N33 0.252 -2.778 -1.738 ETKDGv3 31
G84 O35 1.128 -4.003 0.049 ETKDGv3 32
G84 C37 1.528 -2.222 -2.189 ETKDGv3 33
G84 C39 1.724 -0.872 -1.554 ETKDGv3 34
G84 C41 1.562 -2.121 -3.725 ETKDGv3 35
G84 C43 -5.757 -3.532 0.942 ETKDGv3 36
G84 C45 -5.113 -4.378 -1.311 ETKDGv3 37
G84 O47 0.869 0.036 -1.741 ETKDGv3 38
G84 N49 2.884 -0.620 -0.749 ETKDGv3 39
G84 C51 2.886 -1.582 -4.209 ETKDGv3 40
G84 C53 3.965 -2.382 -4.290 ETKDGv3 41
G84 C55 3.033 -0.133 -4.503 ETKDGv3 42
G84 C57 3.331 0.730 -0.401 ETKDGv3 43
G84 C59 3.269 0.913 1.131 ETKDGv3 44
G84 C61 1.818 0.904 1.664 ETKDGv3 45
G84 C63 4.759 0.929 -0.948 ETKDGv3 46
G84 C65 1.810 0.837 3.146 ETKDGv3 47
G84 O66 2.173 -0.170 3.809 ETKDGv3 48
G84 N69 1.348 2.022 3.753 ETKDGv3 49
G84 C71 1.026 2.997 2.733 ETKDGv3 50
G84 C73 1.080 2.237 1.395 ETKDGv3 51
G84 C82 5.170 2.405 -1.021 ETKDGv3 52
G84 C84 6.465 2.545 -1.757 ETKDGv3 53
G84 O86 6.450 2.774 -3.136 ETKDGv3 54
G84 O88 7.556 2.412 -1.137 ETKDGv3 55
G84 H3 8.185 1.893 -3.871 ETKDGv3 56
G84 H3A 8.293 3.666 -3.511 ETKDGv3 57
G84 H4 -2.194 2.701 2.268 ETKDGv3 58
G84 H5 8.212 3.254 -5.962 ETKDGv3 59
G84 H5A 6.644 2.377 -5.778 ETKDGv3 60
G84 H5B 6.740 4.146 -5.408 ETKDGv3 61
G84 H7 6.140 -2.476 -4.742 ETKDGv3 62
G84 H9 6.366 -0.110 -5.217 ETKDGv3 63
G84 H10 -6.204 3.765 5.434 ETKDGv3 64
G84 H11 4.331 1.426 -5.053 ETKDGv3 65
G84 H12 -5.524 -1.613 -0.925 ETKDGv3 66
G84 H12A -3.843 -1.891 -1.453 ETKDGv3 67
G84 H12B -4.177 -1.376 0.242 ETKDGv3 68
G84 H13 -1.287 0.791 3.696 ETKDGv3 69
G84 H13A -2.947 0.080 3.775 ETKDGv3 70
G84 H14 -2.859 -6.066 -0.998 ETKDGv3 71
G84 H14A -1.766 -6.013 0.430 ETKDGv3 72
G84 H14B -1.130 -5.664 -1.228 ETKDGv3 73
G84 H15 -4.639 4.536 7.330 ETKDGv3 74
G84 H16 -2.241 4.176 7.153 ETKDGv3 75
G84 H18 -1.257 3.011 5.080 ETKDGv3 76
G84 H19 -7.372 2.892 3.350 ETKDGv3 77
G84 H20 -7.968 2.005 1.163 ETKDGv3 78
G84 H21 -6.153 1.101 -0.398 ETKDGv3 79
G84 HN21 -1.655 -1.304 -0.297 ETKDGv3 80
G84 H22 -3.824 1.110 0.294 ETKDGv3 81
G84 H23 -0.978 -3.810 1.321 ETKDGv3 82
G84 H25 -2.469 -3.603 -1.359 ETKDGv3 83
G84 HN33 -0.619 -2.447 -2.211 ETKDGv3 84
G84 H37 2.351 -2.905 -1.881 ETKDGv3 85
G84 H41 0.735 -1.469 -4.083 ETKDGv3 86
G84 H41A 1.390 -3.129 -4.162 ETKDGv3 87
G84 H43 -5.478 -2.893 1.808 ETKDGv3 88
G84 H43A -6.734 -3.179 0.546 ETKDGv3 89
G84 H43B -5.883 -4.573 1.311 ETKDGv3 90
G84 H45 -6.114 -4.065 -1.679 ETKDGv3 91
G84 H45A -5.183 -5.436 -0.979 ETKDGv3 92
G84 H45B -4.418 -4.319 -2.173 ETKDGv3 93
G84 HN49 3.469 -1.430 -0.441 ETKDGv3 94
G84 H53 3.890 -3.436 -4.052 ETKDGv3 95
G84 H55 2.178 0.527 -4.427 ETKDGv3 96
G84 H57 2.673 1.482 -0.888 ETKDGv3 97
G84 H59 3.844 0.088 1.608 ETKDGv3 98
G84 H59A 3.756 1.866 1.429 ETKDGv3 99
G84 H61 1.244 0.044 1.255 ETKDGv3 100
G84 H63 4.801 0.505 -1.976 ETKDGv3 101
G84 H63A 5.489 0.363 -0.326 ETKDGv3 102
G84 HN69 1.345 2.206 4.781 ETKDGv3 103
G84 H71 1.786 3.807 2.748 ETKDGv3 104
G84 H71A 0.019 3.427 2.913 ETKDGv3 105
G84 H73 0.044 2.016 1.057 ETKDGv3 106
G84 H73A 1.572 2.860 0.617 ETKDGv3 107
G84 H82 5.284 2.827 -0.001 ETKDGv3 108
G84 H82A 4.392 2.992 -1.556 ETKDGv3 109
#