data_GBQ
#
_chem_comp.id GBQ
_chem_comp.name
5-[[(2~{R},3~{S})-2-[(1~{R})-1-[3,5-bis(trifluoromethyl)phenyl]ethoxy]-3-(4-fluorophenyl)morpholin-4-yl]methyl]-1,2-dihydro-1,2,4-triazol-3-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H21 F7 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-09-11
_chem_comp.pdbx_modified_date 2019-01-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 534.427
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GBQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HLO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GBQ C13 C1 C 0 1 N N N N N N 4.538 -1.327 35.159 -2.274 -2.688 -1.410 C13 GBQ 1
GBQ C21 C2 C 0 1 N N N N N N 5.940 -1.423 26.965 3.623 0.503 2.235 C21 GBQ 2
GBQ C22 C3 C 0 1 N N N N N N 4.987 -0.275 27.202 2.456 0.310 3.207 C22 GBQ 3
GBQ C24 C4 C 0 1 N N N N N N 7.260 -3.132 27.839 4.184 0.920 -0.084 C24 GBQ 4
GBQ C01 C5 C 0 1 N N N N N N 4.771 2.111 30.585 -0.736 -0.373 3.365 C01 GBQ 5
GBQ C02 C6 C 0 1 N N R N N N 3.928 0.809 30.515 -0.951 0.553 2.167 C02 GBQ 6
GBQ C03 C7 C 0 1 Y N N N N N 3.372 0.471 31.950 -2.003 -0.033 1.261 C03 GBQ 7
GBQ C04 C8 C 0 1 Y N N N N N 4.139 -0.245 32.888 -1.671 -1.046 0.380 C04 GBQ 8
GBQ C05 C9 C 0 1 Y N N N N N 3.642 -0.536 34.174 -2.636 -1.584 -0.450 C05 GBQ 9
GBQ C06 C10 C 0 1 Y N N N N N 2.358 -0.118 34.558 -3.933 -1.108 -0.401 C06 GBQ 10
GBQ C07 C11 C 0 1 Y N N N N N 1.576 0.599 33.628 -4.265 -0.094 0.478 C07 GBQ 11
GBQ C08 C12 C 0 1 Y N N N N N 2.077 0.892 32.339 -3.301 0.439 1.313 C08 GBQ 12
GBQ C09 C13 C 0 1 N N N N N N 0.163 1.067 34.035 -5.678 0.424 0.531 C09 GBQ 13
GBQ C18 C14 C 0 1 N N R N N N 4.213 -1.283 29.250 1.093 1.775 1.891 C18 GBQ 14
GBQ C19 C15 C 0 1 N N S N N N 5.253 -2.499 29.110 2.246 1.984 0.906 C19 GBQ 15
GBQ C25 C16 C 0 1 N N N N N N 8.433 -2.646 26.985 4.885 -0.404 -0.244 C25 GBQ 16
GBQ C27 C17 C 0 1 N N N N N N 10.323 -1.521 26.386 5.403 -2.498 0.007 C27 GBQ 17
GBQ C31 C18 C 0 1 Y N N N N N 5.874 -3.030 30.445 1.692 2.224 -0.475 C31 GBQ 18
GBQ C32 C19 C 0 1 Y N N N N N 5.375 -4.182 31.100 1.267 1.157 -1.244 C32 GBQ 19
GBQ C33 C20 C 0 1 Y N N N N N 5.926 -4.666 32.307 0.758 1.377 -2.510 C33 GBQ 20
GBQ C34 C21 C 0 1 Y N N N N N 7.001 -3.975 32.880 0.674 2.666 -3.008 C34 GBQ 21
GBQ C35 C22 C 0 1 Y N N N N N 7.537 -2.821 32.279 1.100 3.734 -2.236 C35 GBQ 22
GBQ C36 C23 C 0 1 Y N N N N N 6.964 -2.360 31.075 1.604 3.513 -0.969 C36 GBQ 23
GBQ F10 F1 F 0 1 N N N N N N -0.032 2.409 34.173 -6.465 -0.269 -0.395 F10 GBQ 24
GBQ F11 F2 F 0 1 N N N N N N -0.305 0.603 35.224 -6.197 0.236 1.817 F11 GBQ 25
GBQ F12 F3 F 0 1 N N N N N N -0.846 0.731 33.200 -5.687 1.788 0.220 F12 GBQ 26
GBQ F14 F4 F 0 1 N N N N N N 4.228 -2.638 35.342 -2.455 -3.927 -0.785 F14 GBQ 27
GBQ F15 F5 F 0 1 N N N N N N 5.858 -1.402 34.851 -3.094 -2.611 -2.540 F15 GBQ 28
GBQ F16 F6 F 0 1 N N N N N N 4.597 -0.869 36.436 -0.936 -2.552 -1.794 F16 GBQ 29
GBQ F37 F7 F 0 1 N N N N N N 7.542 -4.431 34.050 0.177 2.882 -4.245 F37 GBQ 30
GBQ N20 N1 N 0 1 N N N N N N 6.403 -2.023 28.247 3.095 0.784 0.892 N20 GBQ 31
GBQ N26 N2 N 0 1 N N N N N N 9.396 -1.767 27.445 4.576 -1.508 0.385 N26 GBQ 32
GBQ N29 N3 N 0 1 N N N N N N 9.876 -2.282 25.249 6.264 -2.001 -0.906 N29 GBQ 33
GBQ N30 N4 N 0 1 N N N N N N 8.695 -2.974 25.643 5.931 -0.646 -1.065 N30 GBQ 34
GBQ O17 O1 O 0 1 N N N N N N 4.782 -0.233 30.017 0.276 0.691 1.446 O17 GBQ 35
GBQ O23 O2 O 0 1 N N N N N N 3.900 -0.735 27.985 1.625 1.473 3.184 O23 GBQ 36
GBQ O28 O3 O 0 1 N N N N N N 11.318 -0.811 26.381 5.375 -3.646 0.411 O28 GBQ 37
GBQ H1 H1 H 0 1 N N N N N N 5.428 -2.196 26.373 4.238 1.341 2.566 H1 GBQ 38
GBQ H2 H2 H 0 1 N N N N N N 6.813 -1.053 26.408 4.227 -0.403 2.207 H2 GBQ 39
GBQ H3 H3 H 0 1 N N N N N N 5.509 0.534 27.734 1.872 -0.560 2.905 H3 GBQ 40
GBQ H4 H4 H 0 1 N N N N N N 4.614 0.101 26.238 2.842 0.158 4.214 H4 GBQ 41
GBQ H5 H5 H 0 1 N N N N N N 6.664 -3.848 27.254 4.895 1.668 0.267 H5 GBQ 42
GBQ H6 H6 H 0 1 N N N N N N 7.654 -3.630 28.738 3.774 1.232 -1.045 H6 GBQ 43
GBQ H7 H7 H 0 1 N N N N N N 4.146 2.933 30.964 -0.409 -1.352 3.014 H7 GBQ 44
GBQ H8 H8 H 0 1 N N N N N N 5.625 1.959 31.261 0.025 0.051 4.021 H8 GBQ 45
GBQ H9 H9 H 0 1 N N N N N N 5.139 2.364 29.580 -1.672 -0.478 3.915 H9 GBQ 46
GBQ H10 H10 H 0 1 N N N N N N 3.077 0.970 29.836 -1.278 1.532 2.518 H10 GBQ 47
GBQ H11 H11 H 0 1 N N N N N N 5.130 -0.579 32.616 -0.657 -1.417 0.342 H11 GBQ 48
GBQ H12 H12 H 0 1 N N N N N N 1.977 -0.340 35.544 -4.687 -1.528 -1.051 H12 GBQ 49
GBQ H13 H13 H 0 1 N N N N N N 1.464 1.444 31.642 -3.561 1.227 2.004 H13 GBQ 50
GBQ H14 H14 H 0 1 N N N N N N 3.306 -1.667 29.739 0.493 2.684 1.947 H14 GBQ 51
GBQ H15 H15 H 0 1 N N N N N N 4.741 -3.331 28.605 2.838 2.845 1.216 H15 GBQ 52
GBQ H16 H16 H 0 1 N N N N N N 4.542 -4.710 30.660 1.333 0.152 -0.855 H16 GBQ 53
GBQ H17 H17 H 0 1 N N N N N N 5.526 -5.551 32.779 0.426 0.543 -3.111 H17 GBQ 54
GBQ H18 H18 H 0 1 N N N N N N 8.369 -2.300 32.729 1.035 4.740 -2.624 H18 GBQ 55
GBQ H19 H19 H 0 1 N N N N N N 7.365 -1.469 30.615 1.932 4.346 -0.365 H19 GBQ 56
GBQ H21 H21 H 0 1 N N N N N N 8.150 -3.584 25.068 6.365 -0.008 -1.653 H21 GBQ 57
GBQ H22 H22 H 0 1 N N N N N N 10.313 -2.318 24.350 6.975 -2.483 -1.359 H22 GBQ 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GBQ N29 N30 SING N N 1
GBQ N29 C27 SING N N 2
GBQ N30 C25 SING N N 3
GBQ O28 C27 DOUB N N 4
GBQ C27 N26 SING N N 5
GBQ C21 C22 SING N N 6
GBQ C21 N20 SING N N 7
GBQ C25 N26 DOUB N N 8
GBQ C25 C24 SING N N 9
GBQ C22 O23 SING N N 10
GBQ C24 N20 SING N N 11
GBQ O23 C18 SING N N 12
GBQ N20 C19 SING N N 13
GBQ C19 C18 SING N N 14
GBQ C19 C31 SING N N 15
GBQ C18 O17 SING N N 16
GBQ O17 C02 SING N N 17
GBQ C31 C36 DOUB Y N 18
GBQ C31 C32 SING Y N 19
GBQ C02 C01 SING N N 20
GBQ C02 C03 SING N N 21
GBQ C36 C35 SING Y N 22
GBQ C32 C33 DOUB Y N 23
GBQ C03 C08 DOUB Y N 24
GBQ C03 C04 SING Y N 25
GBQ C35 C34 DOUB Y N 26
GBQ C33 C34 SING Y N 27
GBQ C08 C07 SING Y N 28
GBQ C34 F37 SING N N 29
GBQ C04 C05 DOUB Y N 30
GBQ F12 C09 SING N N 31
GBQ C07 C09 SING N N 32
GBQ C07 C06 DOUB Y N 33
GBQ C09 F10 SING N N 34
GBQ C09 F11 SING N N 35
GBQ C05 C06 SING Y N 36
GBQ C05 C13 SING N N 37
GBQ F15 C13 SING N N 38
GBQ C13 F14 SING N N 39
GBQ C13 F16 SING N N 40
GBQ C21 H1 SING N N 41
GBQ C21 H2 SING N N 42
GBQ C22 H3 SING N N 43
GBQ C22 H4 SING N N 44
GBQ C24 H5 SING N N 45
GBQ C24 H6 SING N N 46
GBQ C01 H7 SING N N 47
GBQ C01 H8 SING N N 48
GBQ C01 H9 SING N N 49
GBQ C02 H10 SING N N 50
GBQ C04 H11 SING N N 51
GBQ C06 H12 SING N N 52
GBQ C08 H13 SING N N 53
GBQ C18 H14 SING N N 54
GBQ C19 H15 SING N N 55
GBQ C32 H16 SING N N 56
GBQ C33 H17 SING N N 57
GBQ C35 H18 SING N N 58
GBQ C36 H19 SING N N 59
GBQ N30 H21 SING N N 60
GBQ N29 H22 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GBQ InChI InChI 1.03 InChI=1S/C23H21F7N4O3/c1-12(14-8-15(22(25,26)27)10-16(9-14)23(28,29)30)37-20-19(13-2-4-17(24)5-3-13)34(6-7-36-20)11-18-31-21(35)33-32-18/h2-5,8-10,12,19-20H,6-7,11H2,1H3,(H2,31,32,33,35)/t12-,19+,20-/m1/s1
GBQ InChIKey InChI 1.03 ATALOFNDEOCMKK-OITMNORJSA-N
GBQ SMILES_CANONICAL CACTVS 3.385 C[C@@H](O[C@H]1OCCN(CC2=NC(=O)NN2)[C@H]1c3ccc(F)cc3)c4cc(cc(c4)C(F)(F)F)C(F)(F)F
GBQ SMILES CACTVS 3.385 C[CH](O[CH]1OCCN(CC2=NC(=O)NN2)[CH]1c3ccc(F)cc3)c4cc(cc(c4)C(F)(F)F)C(F)(F)F
GBQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@H](c1cc(cc(c1)C(F)(F)F)C(F)(F)F)O[C@@H]2[C@@H](N(CCO2)CC3=NC(=O)NN3)c4ccc(cc4)F
GBQ SMILES "OpenEye OEToolkits" 2.0.6 CC(c1cc(cc(c1)C(F)(F)F)C(F)(F)F)OC2C(N(CCO2)CC3=NC(=O)NN3)c4ccc(cc4)F
#
_pdbx_chem_comp_identifier.comp_id GBQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
5-[[(2~{R},3~{S})-2-[(1~{R})-1-[3,5-bis(trifluoromethyl)phenyl]ethoxy]-3-(4-fluorophenyl)morpholin-4-yl]methyl]-1,2-dihydro-1,2,4-triazol-3-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GBQ 'Create component' 2018-09-11 RCSB
GBQ 'Initial release' 2019-01-16 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id GBQ
_pdbe_chem_comp_drugbank_details.drugbank_id DB00673
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Aprepitant
_pdbe_chem_comp_drugbank_details.description
'Aprepitant, an antiemetic, is a substance P/neurokinin 1 (NK1) receptor antagonist which, in combination with other antiemetic agents, is indicated for the prevention of acute and delayed nausea and vomiting associated with initial and repeat courses of highly emetogenic cancer chemotherapy. Aprepitant is a selective high-affinity antagonist of human substance P/neurokinin 1 (NK1) receptors. Aprepitant has little or no affinity for serotonin (5-HT3), dopamine, and corticosteroid receptors, the targets of existing therapies for chemotherapy-induced nausea and vomiting (CI NV).'
_pdbe_chem_comp_drugbank_details.cas_number 170729-80-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Aprepitant has been shown in animal models to inhibit emesis induced by cytotoxic chemotherapeutic agents, such as cisplatin, via central actions. Animal and human Positron Emission Tomography (PET) studies with Aprepitant have shown that it crosses the blood brain barrier and occupies brain NK1 receptors. Animal and human studies show that Aprepitant augments the antiemetic activity of the 5-HT<sub>3</sub>-receptor antagonist ondansetron and the corticosteroid ethasone and inhibits both the acute and delayed phases of cisplatin induced emesis.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
GBQ Aprepitant ChEMBL Tradename
GBQ Emend ChEMBL Tradename
GBQ MK-869 ChEMBL 'Research Code'
GBQ Aprepitant DrugBank ?
GBQ Aprepitantum DrugBank ?
GBQ Aprecap DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id GBQ
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00673
_pdbe_chem_comp_drugbank_classification.parent Phenylmorpholines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Oxazinanes
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylmorpholines. These are aromatic compounds containing a morpholine ring and a benzene ring linked to each other through a CC or a CN bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id GBQ
_pdbe_chem_comp_drugbank_targets.drugbank_id DB00673
_pdbe_chem_comp_drugbank_targets.name 'Substance-P receptor'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P25103
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GBQ C13 C 4.299 1.702 1
GBQ C21 C 13.392 -2.048 2
GBQ C22 C 13.392 -0.548 3
GBQ C24 C 12.093 -4.298 4
GBQ C01 C 10.794 2.452 5
GBQ C02 C 9.495 1.702 6
GBQ C03 C 8.196 2.452 7
GBQ C04 C 6.897 1.702 8
GBQ C05 C 5.598 2.452 9
GBQ C06 C 5.598 3.952 10
GBQ C07 C 6.897 4.702 11
GBQ C08 C 8.196 3.952 12
GBQ C09 C 6.897 6.202 13
GBQ C18 C 10.794 -0.548 14
GBQ C19 C 10.794 -2.048 15
GBQ C25 C 13.392 -5.048 16
GBQ C27 C 15.766 -5.553 17
GBQ C31 C 9.495 -2.798 18
GBQ C32 C 9.495 -4.298 19
GBQ C33 C 8.196 -5.048 20
GBQ C34 C 6.897 -4.298 21
GBQ C35 C 6.897 -2.798 22
GBQ C36 C 8.196 -2.048 23
GBQ F10 F 8.397 6.202 24
GBQ F11 F 5.397 6.202 25
GBQ F12 F 6.897 7.702 26
GBQ F14 F 3.549 3.001 27
GBQ F15 F 3.000 0.952 28
GBQ F16 F 5.049 0.403 29
GBQ F37 F 5.598 -5.048 30
GBQ N20 N 12.093 -2.798 31
GBQ N26 N 14.763 -4.438 32
GBQ N29 N 15.016 -6.852 33
GBQ N30 N 13.549 -6.540 34
GBQ O17 O 9.495 0.202 35
GBQ O23 O 12.093 0.202 36
GBQ O28 O 17.258 -5.396 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GBQ N29 N30 SINGLE NONE 1
GBQ N29 C27 SINGLE NONE 2
GBQ N30 C25 SINGLE NONE 3
GBQ O28 C27 DOUBLE NONE 4
GBQ C27 N26 SINGLE NONE 5
GBQ C21 C22 SINGLE NONE 6
GBQ C21 N20 SINGLE NONE 7
GBQ C25 N26 DOUBLE NONE 8
GBQ C25 C24 SINGLE NONE 9
GBQ C22 O23 SINGLE NONE 10
GBQ C24 N20 SINGLE NONE 11
GBQ O23 C18 SINGLE NONE 12
GBQ N20 C19 SINGLE NONE 13
GBQ C19 C18 SINGLE NONE 14
GBQ C19 C31 SINGLE BEGINWEDGE 15
GBQ C18 O17 SINGLE BEGINWEDGE 16
GBQ O17 C02 SINGLE NONE 17
GBQ C31 C36 SINGLE NONE 18
GBQ C31 C32 DOUBLE NONE 19
GBQ C02 C01 SINGLE BEGINWEDGE 20
GBQ C02 C03 SINGLE NONE 21
GBQ C36 C35 DOUBLE NONE 22
GBQ C32 C33 SINGLE NONE 23
GBQ C03 C08 SINGLE NONE 24
GBQ C03 C04 DOUBLE NONE 25
GBQ C35 C34 SINGLE NONE 26
GBQ C33 C34 DOUBLE NONE 27
GBQ C08 C07 DOUBLE NONE 28
GBQ C34 F37 SINGLE NONE 29
GBQ C04 C05 SINGLE NONE 30
GBQ F12 C09 SINGLE NONE 31
GBQ C07 C09 SINGLE NONE 32
GBQ C07 C06 SINGLE NONE 33
GBQ C09 F10 SINGLE NONE 34
GBQ C09 F11 SINGLE NONE 35
GBQ C05 C06 DOUBLE NONE 36
GBQ C05 C13 SINGLE NONE 37
GBQ F15 C13 SINGLE NONE 38
GBQ C13 F14 SINGLE NONE 39
GBQ C13 F16 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GBQ MurckoScaffold S1 scaffold 'O=c1nc(CN2CCO[C@H](OCc3ccccc3)[C@@H]2c2ccccc2)[nH][nH]1' InChI=1S/C20H22N4O3/c25-20-21-17(22-23-20)13-24-11-12-26-19(18(24)16-9-5-2-6-10-16)27-14-15-7-3-1-4-8-15/h1-10,18-19H,11-14H2,(H2,21,22,23,25)/t18-,19+/m0/s1 ZWWXMELLZMGUDT-RBUKOAKNSA-N
GBQ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GBQ Z1097086259 F2 fragment c1ccc(C2COCCN2)cc1 InChI=1S/C10H13NO/c1-2-4-9(5-3-1)10-8-12-7-6-11-10/h1-5,10-11H,6-8H2 MHZXKVPCJBPNKI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GBQ C21 S1 1
GBQ C22 S1 1
GBQ C24 S1 1
GBQ C02 S1 1
GBQ C03 S1 1
GBQ C04 S1 1
GBQ C05 S1 1
GBQ C06 S1 1
GBQ C07 S1 1
GBQ C08 S1 1
GBQ C18 S1 1
GBQ C19 S1 1
GBQ C25 S1 1
GBQ C27 S1 1
GBQ C31 S1 1
GBQ C32 S1 1
GBQ C33 S1 1
GBQ C34 S1 1
GBQ C35 S1 1
GBQ C36 S1 1
GBQ N20 S1 1
GBQ N26 S1 1
GBQ N29 S1 1
GBQ N30 S1 1
GBQ O17 S1 1
GBQ O23 S1 1
GBQ O28 S1 1
GBQ C03 F1 1
GBQ C08 F1 1
GBQ C07 F1 1
GBQ C06 F1 1
GBQ C05 F1 1
GBQ C04 F1 1
GBQ C31 F1 2
GBQ C36 F1 2
GBQ C35 F1 2
GBQ C34 F1 2
GBQ C33 F1 2
GBQ C32 F1 2
GBQ C21 F2 1
GBQ C22 F2 1
GBQ O23 F2 1
GBQ C18 F2 1
GBQ C19 F2 1
GBQ N20 F2 1
GBQ C31 F2 1
GBQ C36 F2 1
GBQ C35 F2 1
GBQ C34 F2 1
GBQ C33 F2 1
GBQ C32 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GBQ
_pdbe_chem_comp_rdkit_properties.exactmw 534.150
_pdbe_chem_comp_rdkit_properties.amw 534.432
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.391
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 234.369
_pdbe_chem_comp_rdkit_properties.tpsa 83.240
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.578
_pdbe_chem_comp_rdkit_properties.CrippenMR 113.223
_pdbe_chem_comp_rdkit_properties.chi0v 17.159
_pdbe_chem_comp_rdkit_properties.chi1v 9.109
_pdbe_chem_comp_rdkit_properties.chi2v 3.932
_pdbe_chem_comp_rdkit_properties.chi3v 3.932
_pdbe_chem_comp_rdkit_properties.chi4v 2.475
_pdbe_chem_comp_rdkit_properties.chi0n 38.159
_pdbe_chem_comp_rdkit_properties.chi1n 19.503
_pdbe_chem_comp_rdkit_properties.chi2n 3.932
_pdbe_chem_comp_rdkit_properties.chi3n 3.932
_pdbe_chem_comp_rdkit_properties.chi4n 2.475
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.230
_pdbe_chem_comp_rdkit_properties.kappa1 10.866
_pdbe_chem_comp_rdkit_properties.kappa2 10.263
_pdbe_chem_comp_rdkit_properties.kappa3 6.374
_pdbe_chem_comp_rdkit_properties.Phi 3.014
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GBQ UniChem ChEMBL CHEMBL1471
GBQ UniChem DrugBank DB00673
GBQ UniChem PDBe GBQ
GBQ UniChem 'Guide to Pharmacology' 3490
GBQ UniChem 'PubChem DOTF' 12015114
GBQ UniChem ChEBI 499361
GBQ UniChem ZINC ZINC000027428713
GBQ UniChem eMolecules 8763262
GBQ UniChem fdasrs 1NF15YR6UY
GBQ UniChem HMDB HMDB0014811
GBQ UniChem Selleck Aprepitant
GBQ UniChem LINCS LSM-5637
GBQ UniChem Nikkaji J1.059.639D
GBQ UniChem BindingDb 50220136
GBQ UniChem 'EPA CompTox Dashboard' DTXSID3049047
GBQ UniChem DrugCentral 230
GBQ UniChem ChemicalBook CB32557888
GBQ UniChem ChemicalBook CB7500857
GBQ UniChem DailyMed APREPITANT
GBQ UniChem ClinicalTrials APREPITANT
GBQ UniChem ClinicalTrials CINVANTI
GBQ UniChem ClinicalTrials EMEND
GBQ UniChem ClinicalTrials L-754,030
GBQ UniChem ClinicalTrials MK-0869
GBQ UniChem ClinicalTrials MK-869
GBQ UniChem rxnorm APREPITANT
GBQ UniChem rxnorm CINVANTI
GBQ UniChem rxnorm EMEND
GBQ UniChem MedChemExpress HY-10052
GBQ UniChem 'Probes And Drugs' PD009855
GBQ UniChem eMolecules 30153720
GBQ UniChem SureChEMBL SCHEMBL264924
GBQ UniChem 'PubChem TPHARMA' 14787735
GBQ UniChem 'PubChem TPHARMA' 14812125
GBQ UniChem 'PubChem TPHARMA' 14861083
GBQ UniChem PubChem 135413536
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GBQ C13 4.540 -1.308 3.050 ETKDGv3 1
GBQ C21 -2.380 -0.236 2.364 ETKDGv3 2
GBQ C22 -2.350 1.308 2.245 ETKDGv3 3
GBQ C24 -3.191 -1.191 0.213 ETKDGv3 4
GBQ C01 2.325 3.094 -0.372 ETKDGv3 5
GBQ C02 1.676 2.040 0.525 ETKDGv3 6
GBQ C03 2.535 0.791 0.561 ETKDGv3 7
GBQ C04 3.122 0.398 1.704 ETKDGv3 8
GBQ C05 3.948 -0.834 1.747 ETKDGv3 9
GBQ C06 4.079 -1.574 0.631 ETKDGv3 10
GBQ C07 3.460 -1.143 -0.645 ETKDGv3 11
GBQ C08 2.714 -0.024 -0.667 ETKDGv3 12
GBQ C09 3.627 -2.011 -1.868 ETKDGv3 13
GBQ C18 -0.430 1.064 0.963 ETKDGv3 14
GBQ C19 -0.745 -0.392 0.501 ETKDGv3 15
GBQ C25 -4.073 -0.005 -0.061 ETKDGv3 16
GBQ C27 -4.923 1.776 -0.905 ETKDGv3 17
GBQ C31 -0.612 -0.642 -1.003 ETKDGv3 18
GBQ C32 -0.157 -1.834 -1.438 ETKDGv3 19
GBQ C33 -0.045 -2.117 -2.884 ETKDGv3 20
GBQ C34 -0.408 -1.193 -3.779 ETKDGv3 21
GBQ C35 -0.929 0.110 -3.321 ETKDGv3 22
GBQ C36 -1.031 0.371 -2.013 ETKDGv3 23
GBQ F10 3.232 -1.355 -3.022 ETKDGv3 24
GBQ F11 2.867 -3.156 -1.720 ETKDGv3 25
GBQ F12 4.956 -2.369 -2.005 ETKDGv3 26
GBQ F14 4.710 -0.249 3.925 ETKDGv3 27
GBQ F15 5.775 -1.896 2.838 ETKDGv3 28
GBQ F16 3.691 -2.234 3.626 ETKDGv3 29
GBQ F37 -0.304 -1.451 -5.105 ETKDGv3 30
GBQ N20 -2.027 -0.889 1.087 ETKDGv3 31
GBQ N26 -3.857 0.840 -1.022 ETKDGv3 32
GBQ N29 -5.791 1.454 0.162 ETKDGv3 33
GBQ N30 -5.241 0.297 0.707 ETKDGv3 34
GBQ O17 0.387 1.743 0.017 ETKDGv3 35
GBQ O23 -1.645 1.770 1.102 ETKDGv3 36
GBQ O28 -5.073 2.771 -1.660 ETKDGv3 37
GBQ H1 -3.372 -0.578 2.732 ETKDGv3 38
GBQ H2 -1.641 -0.551 3.132 ETKDGv3 39
GBQ H3 -3.390 1.689 2.183 ETKDGv3 40
GBQ H4 -1.908 1.752 3.164 ETKDGv3 41
GBQ H5 -2.885 -1.662 -0.742 ETKDGv3 42
GBQ H6 -3.809 -1.965 0.717 ETKDGv3 43
GBQ H7 3.348 3.331 -0.010 ETKDGv3 44
GBQ H8 2.383 2.740 -1.423 ETKDGv3 45
GBQ H9 1.721 4.026 -0.351 ETKDGv3 46
GBQ H10 1.602 2.511 1.534 ETKDGv3 47
GBQ H11 2.983 0.975 2.609 ETKDGv3 48
GBQ H12 4.637 -2.503 0.656 ETKDGv3 49
GBQ H13 2.221 0.291 -1.578 ETKDGv3 50
GBQ H14 0.068 0.994 1.967 ETKDGv3 51
GBQ H15 0.058 -1.001 0.975 ETKDGv3 52
GBQ H16 0.133 -2.606 -0.736 ETKDGv3 53
GBQ H17 0.334 -3.075 -3.215 ETKDGv3 54
GBQ H18 -1.229 0.854 -4.047 ETKDGv3 55
GBQ H19 -1.412 1.334 -1.702 ETKDGv3 56
GBQ H21 -5.626 -0.230 1.522 ETKDGv3 57
GBQ H22 -6.649 1.949 0.491 ETKDGv3 58
#