data_GBZ
#
_chem_comp.id GBZ
_chem_comp.name
"(2~{S})-2-[[(2~{S})-6-[2-[(6-fluoranylpyridin-3-yl)carbonylamino]ethyl-phenyl-amino]-1-oxidanyl-1,6-bis(oxidanylidene)hexan-2-yl]carbamoylamino]pentanedioic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H30 F N5 O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-09-12
_chem_comp.pdbx_modified_date 2018-11-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 575.543
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GBZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HKZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GBZ OBN O1 O 0 1 N N N N N N 13.870 49.359 41.299 8.550 2.959 -3.073 OBN GBZ 1
GBZ CBA C1 C 0 1 N N N N N N 13.956 48.127 41.049 7.693 3.372 -2.126 CBA GBZ 2
GBZ OBO O2 O 0 1 N N N N N N 13.164 47.484 40.312 7.357 4.532 -2.080 OBO GBZ 3
GBZ CAZ C2 C 0 1 N N N N N N 15.149 47.404 41.690 7.150 2.390 -1.121 CAZ GBZ 4
GBZ CAY C3 C 0 1 N N N N N N 14.882 45.901 41.823 6.203 3.114 -0.161 CAY GBZ 5
GBZ CAW C4 C 0 1 N N S N N N 16.212 45.136 42.195 5.652 2.116 0.860 CAW GBZ 6
GBZ CAX C5 C 0 1 N N N N N N 17.214 45.249 40.994 4.817 2.849 1.878 CAX GBZ 7
GBZ OBG O3 O 0 1 N N N N N N 17.141 44.428 40.061 3.650 2.571 2.016 OBG GBZ 8
GBZ OBF O4 O 0 1 N N N N N N 18.021 46.201 41.034 5.371 3.812 2.632 OBF GBZ 9
GBZ NAV N1 N 0 1 N N N N N N 16.937 45.715 43.328 4.823 1.122 0.173 NAV GBZ 10
GBZ CAU C6 C 0 1 N N N N N N 18.148 45.258 43.703 4.645 -0.098 0.716 CAU GBZ 11
GBZ OBE O5 O 0 1 N N N N N N 18.536 44.180 43.265 5.173 -0.375 1.776 OBE GBZ 12
GBZ N N2 N 0 1 N N N N N N 18.866 46.051 44.550 3.883 -1.012 0.085 N GBZ 13
GBZ CA C7 C 0 1 N N S N N N 20.143 45.697 45.235 3.690 -2.339 0.675 CA GBZ 14
GBZ C C8 C 0 1 N N N N N N 20.295 46.421 46.597 4.836 -3.236 0.282 C GBZ 15
GBZ OXT O6 O 0 1 N N N N N N 19.809 47.581 46.711 5.722 -2.810 -0.420 OXT GBZ 16
GBZ O O7 O 0 1 N N N N N N 20.968 45.807 47.462 4.871 -4.507 0.711 O GBZ 17
GBZ CB C9 C 0 1 N N N N N N 21.394 46.026 44.437 2.376 -2.938 0.167 CB GBZ 18
GBZ CAP C10 C 0 1 N N N N N N 21.518 47.521 44.146 1.203 -2.095 0.672 CAP GBZ 19
GBZ CAO C11 C 0 1 N N N N N N 22.706 47.687 43.144 -0.110 -2.694 0.164 CAO GBZ 20
GBZ CAN C12 C 0 1 N N N N N N 24.069 47.690 43.930 -1.266 -1.864 0.662 CAN GBZ 21
GBZ OBB O8 O 0 1 N N N N N N 24.037 47.464 45.125 -1.057 -0.837 1.273 OBB GBZ 22
GBZ NAM N3 N 0 1 N N N N N N 25.277 47.880 43.292 -2.532 -2.263 0.428 NAM GBZ 23
GBZ CBJ C13 C 0 1 Y N N N N N 25.325 47.997 41.937 -2.774 -3.500 -0.179 CBJ GBZ 24
GBZ CBH C14 C 0 1 Y N N N N N 25.163 46.843 41.163 -3.385 -4.520 0.539 CBH GBZ 25
GBZ CBI C15 C 0 1 Y N N N N N 25.187 46.896 39.766 -3.623 -5.740 -0.064 CBI GBZ 26
GBZ CBK C16 C 0 1 Y N N N N N 25.372 48.119 39.125 -3.254 -5.946 -1.380 CBK GBZ 27
GBZ CBM C17 C 0 1 Y N N N N N 25.533 49.274 39.882 -2.646 -4.933 -2.098 CBM GBZ 28
GBZ CBL C18 C 0 1 Y N N N N N 25.509 49.211 41.281 -2.411 -3.709 -1.503 CBL GBZ 29
GBZ CAL C19 C 0 1 N N N N N N 26.493 47.788 44.108 -3.654 -1.402 0.810 CAL GBZ 30
GBZ CAJ C20 C 0 1 N N N N N N 27.254 49.083 44.107 -4.003 -0.473 -0.354 CAJ GBZ 31
GBZ NAI N4 N 0 1 N N N N N N 26.701 50.087 45.058 -5.125 0.388 0.028 NAI GBZ 32
GBZ CAH C21 C 0 1 N N N N N N 26.391 51.311 44.580 -5.608 1.293 -0.846 CAH GBZ 33
GBZ OAK O9 O 0 1 N N N N N N 26.485 51.606 43.390 -5.112 1.395 -1.952 OAK GBZ 34
GBZ CAE C22 C 0 1 Y N N N N N 25.985 52.324 45.436 -6.739 2.161 -0.461 CAE GBZ 35
GBZ CAD C23 C 0 1 Y N N N N N 24.950 53.157 44.986 -7.253 3.102 -1.363 CAD GBZ 36
GBZ CAC C24 C 0 1 Y N N N N N 24.522 54.225 45.767 -8.312 3.891 -0.955 CAC GBZ 37
GBZ CAA C25 C 0 1 Y N N N N N 25.149 54.480 46.987 -8.828 3.727 0.322 CAA GBZ 38
GBZ FAB F1 F 0 1 N N N N N N 24.695 55.523 47.701 -9.863 4.495 0.725 FAB GBZ 39
GBZ NAG N5 N 0 1 Y N N N N N 26.176 53.699 47.430 -8.321 2.831 1.151 NAG GBZ 40
GBZ CAF C26 C 0 1 Y N N N N N 26.634 52.601 46.651 -7.316 2.054 0.805 CAF GBZ 41
GBZ H1 H1 H 0 1 N N N N N N 13.118 49.723 40.846 8.871 3.625 -3.696 H1 GBZ 42
GBZ H2 H2 H 0 1 N N N N N N 16.040 47.556 41.062 6.607 1.601 -1.641 H2 GBZ 43
GBZ H3 H3 H 0 1 N N N N N N 15.329 47.826 42.690 7.975 1.953 -0.557 H3 GBZ 44
GBZ H4 H4 H 0 1 N N N N N N 14.135 45.734 42.613 6.746 3.903 0.359 H4 GBZ 45
GBZ H5 H5 H 0 1 N N N N N N 14.497 45.515 40.867 5.378 3.550 -0.724 H5 GBZ 46
GBZ H6 H6 H 0 1 N N N N N N 15.981 44.076 42.379 6.479 1.615 1.362 H6 GBZ 47
GBZ H7 H7 H 0 1 N N N N N N 18.558 46.194 40.251 4.796 4.254 3.271 H7 GBZ 48
GBZ H8 H8 H 0 1 N N N N N N 16.522 46.469 43.837 4.401 1.343 -0.672 H8 GBZ 49
GBZ H9 H9 H 0 1 N N N N N N 18.498 46.963 44.730 3.461 -0.792 -0.761 H9 GBZ 50
GBZ H10 H10 H 0 1 N N N N N N 20.141 44.615 45.432 3.653 -2.252 1.761 H10 GBZ 51
GBZ H11 H11 H 0 1 N N N N N N 21.063 46.351 48.235 5.626 -5.043 0.432 H11 GBZ 52
GBZ H12 H12 H 0 1 N N N N N N 21.358 45.481 43.482 2.377 -2.943 -0.923 H12 GBZ 53
GBZ H13 H13 H 0 1 N N N N N N 22.275 45.703 45.011 2.276 -3.959 0.535 H13 GBZ 54
GBZ H14 H14 H 0 1 N N N N N N 21.726 48.072 45.075 1.202 -2.090 1.762 H14 GBZ 55
GBZ H15 H15 H 0 1 N N N N N N 20.588 47.898 43.697 1.304 -1.074 0.304 H15 GBZ 56
GBZ H16 H16 H 0 1 N N N N N N 22.596 48.637 42.601 -0.109 -2.699 -0.926 H16 GBZ 57
GBZ H17 H17 H 0 1 N N N N N N 22.699 46.852 42.428 -0.211 -3.715 0.532 H17 GBZ 58
GBZ H18 H18 H 0 1 N N N N N N 25.017 45.892 41.654 -3.672 -4.360 1.567 H18 GBZ 59
GBZ H19 H19 H 0 1 N N N N N N 25.063 45.993 39.187 -4.097 -6.534 0.494 H19 GBZ 60
GBZ H20 H20 H 0 1 N N N N N N 25.390 48.170 38.046 -3.441 -6.901 -1.849 H20 GBZ 61
GBZ H21 H21 H 0 1 N N N N N N 25.677 50.224 39.389 -2.358 -5.097 -3.126 H21 GBZ 62
GBZ H22 H22 H 0 1 N N N N N N 25.635 50.115 41.858 -1.936 -2.917 -2.064 H22 GBZ 63
GBZ H23 H23 H 0 1 N N N N N N 26.212 47.539 45.142 -4.518 -2.019 1.055 H23 GBZ 64
GBZ H24 H24 H 0 1 N N N N N N 27.137 46.994 43.702 -3.375 -0.806 1.679 H24 GBZ 65
GBZ H25 H25 H 0 1 N N N N N N 28.298 48.876 44.385 -3.138 0.144 -0.599 H25 GBZ 66
GBZ H26 H26 H 0 1 N N N N N N 27.222 49.507 43.093 -4.282 -1.069 -1.223 H26 GBZ 67
GBZ H27 H27 H 0 1 N N N N N N 26.563 49.861 46.022 -5.520 0.307 0.910 H27 GBZ 68
GBZ H28 H28 H 0 1 N N N N N N 24.484 52.968 44.030 -6.832 3.209 -2.352 H28 GBZ 69
GBZ H29 H29 H 0 1 N N N N N N 23.710 54.853 45.431 -8.734 4.627 -1.624 H29 GBZ 70
GBZ H30 H30 H 0 1 N N N N N N 27.462 51.994 46.986 -6.932 1.330 1.508 H30 GBZ 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GBZ CBK CBI DOUB Y N 1
GBZ CBK CBM SING Y N 2
GBZ CBI CBH SING Y N 3
GBZ CBM CBL DOUB Y N 4
GBZ OBG CAX DOUB N N 5
GBZ OBO CBA DOUB N N 6
GBZ CAX OBF SING N N 7
GBZ CAX CAW SING N N 8
GBZ CBA OBN SING N N 9
GBZ CBA CAZ SING N N 10
GBZ CBH CBJ DOUB Y N 11
GBZ CBL CBJ SING Y N 12
GBZ CAZ CAY SING N N 13
GBZ CAY CAW SING N N 14
GBZ CBJ NAM SING N N 15
GBZ CAW NAV SING N N 16
GBZ CAO CAN SING N N 17
GBZ CAO CAP SING N N 18
GBZ OBE CAU DOUB N N 19
GBZ NAM CAN SING N N 20
GBZ NAM CAL SING N N 21
GBZ NAV CAU SING N N 22
GBZ OAK CAH DOUB N N 23
GBZ CAU N SING N N 24
GBZ CAN OBB DOUB N N 25
GBZ CAJ CAL SING N N 26
GBZ CAJ NAI SING N N 27
GBZ CAP CB SING N N 28
GBZ CB CA SING N N 29
GBZ N CA SING N N 30
GBZ CAH NAI SING N N 31
GBZ CAH CAE SING N N 32
GBZ CAD CAE DOUB Y N 33
GBZ CAD CAC SING Y N 34
GBZ CA C SING N N 35
GBZ CAE CAF SING Y N 36
GBZ CAC CAA DOUB Y N 37
GBZ C OXT DOUB N N 38
GBZ C O SING N N 39
GBZ CAF NAG DOUB Y N 40
GBZ CAA NAG SING Y N 41
GBZ CAA FAB SING N N 42
GBZ OBN H1 SING N N 43
GBZ CAZ H2 SING N N 44
GBZ CAZ H3 SING N N 45
GBZ CAY H4 SING N N 46
GBZ CAY H5 SING N N 47
GBZ CAW H6 SING N N 48
GBZ OBF H7 SING N N 49
GBZ NAV H8 SING N N 50
GBZ N H9 SING N N 51
GBZ CA H10 SING N N 52
GBZ O H11 SING N N 53
GBZ CB H12 SING N N 54
GBZ CB H13 SING N N 55
GBZ CAP H14 SING N N 56
GBZ CAP H15 SING N N 57
GBZ CAO H16 SING N N 58
GBZ CAO H17 SING N N 59
GBZ CBH H18 SING N N 60
GBZ CBI H19 SING N N 61
GBZ CBK H20 SING N N 62
GBZ CBM H21 SING N N 63
GBZ CBL H22 SING N N 64
GBZ CAL H23 SING N N 65
GBZ CAL H24 SING N N 66
GBZ CAJ H25 SING N N 67
GBZ CAJ H26 SING N N 68
GBZ NAI H27 SING N N 69
GBZ CAD H28 SING N N 70
GBZ CAC H29 SING N N 71
GBZ CAF H30 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GBZ InChI InChI 1.03 InChI=1S/C26H30FN5O9/c27-20-11-9-16(15-29-20)23(36)28-13-14-32(17-5-2-1-3-6-17)21(33)8-4-7-18(24(37)38)30-26(41)31-19(25(39)40)10-12-22(34)35/h1-3,5-6,9,11,15,18-19H,4,7-8,10,12-14H2,(H,28,36)(H,34,35)(H,37,38)(H,39,40)(H2,30,31,41)/t18-,19-/m0/s1
GBZ InChIKey InChI 1.03 AFDHXMJDHQVEHD-OALUTQOASA-N
GBZ SMILES_CANONICAL CACTVS 3.385 OC(=O)CC[C@H](NC(=O)N[C@@H](CCCC(=O)N(CCNC(=O)c1ccc(F)nc1)c2ccccc2)C(O)=O)C(O)=O
GBZ SMILES CACTVS 3.385 OC(=O)CC[CH](NC(=O)N[CH](CCCC(=O)N(CCNC(=O)c1ccc(F)nc1)c2ccccc2)C(O)=O)C(O)=O
GBZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)N(CCNC(=O)c2ccc(nc2)F)C(=O)CCC[C@@H](C(=O)O)NC(=O)N[C@@H](CCC(=O)O)C(=O)O
GBZ SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)N(CCNC(=O)c2ccc(nc2)F)C(=O)CCCC(C(=O)O)NC(=O)NC(CCC(=O)O)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id GBZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"(2~{S})-2-[[(2~{S})-6-[2-[(6-fluoranylpyridin-3-yl)carbonylamino]ethyl-phenyl-amino]-1-oxidanyl-1,6-bis(oxidanylidene)hexan-2-yl]carbamoylamino]pentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GBZ 'Create component' 2018-09-12 EBI
GBZ 'Initial release' 2018-12-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GBZ OBN O 5.104 6.285 1
GBZ CBA C 5.104 7.785 2
GBZ OBO O 3.805 8.535 3
GBZ CAZ C 6.404 8.535 4
GBZ CAY C 7.702 7.785 5
GBZ CAW C 9.002 8.535 6
GBZ CAX C 9.002 10.035 7
GBZ OBG O 7.702 10.785 8
GBZ OBF O 10.301 10.785 9
GBZ NAV N 10.301 7.785 10
GBZ CAU C 10.301 6.285 11
GBZ OBE O 9.002 5.535 12
GBZ N N 11.600 5.535 13
GBZ CA C 11.600 4.035 14
GBZ C C 10.301 3.285 15
GBZ OXT O 9.002 4.035 16
GBZ O O 10.301 1.785 17
GBZ CB C 12.899 3.285 18
GBZ CAP C 12.899 1.785 19
GBZ CAO C 14.198 1.035 20
GBZ CAN C 14.198 -0.465 21
GBZ OBB O 12.899 -1.215 22
GBZ NAM N 15.497 -1.215 23
GBZ CBJ C 16.796 -0.465 24
GBZ CBH C 16.796 1.035 25
GBZ CBI C 18.095 1.785 26
GBZ CBK C 19.394 1.035 27
GBZ CBM C 19.394 -0.465 28
GBZ CBL C 18.095 -1.215 29
GBZ CAL C 15.497 -2.715 30
GBZ CAJ C 14.198 -3.465 31
GBZ NAI N 14.198 -4.965 32
GBZ CAH C 12.899 -5.715 33
GBZ OAK O 11.600 -4.965 34
GBZ CAE C 12.899 -7.215 35
GBZ CAD C 14.198 -7.965 36
GBZ CAC C 14.198 -9.465 37
GBZ CAA C 12.899 -10.215 38
GBZ FAB F 12.899 -11.715 39
GBZ NAG N 11.600 -9.465 40
GBZ CAF C 11.600 -7.965 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GBZ CBK CBI SINGLE NONE 1
GBZ CBK CBM DOUBLE NONE 2
GBZ CBI CBH DOUBLE NONE 3
GBZ CBM CBL SINGLE NONE 4
GBZ OBG CAX DOUBLE NONE 5
GBZ OBO CBA DOUBLE NONE 6
GBZ CAX OBF SINGLE NONE 7
GBZ CAX CAW SINGLE NONE 8
GBZ CBA OBN SINGLE NONE 9
GBZ CBA CAZ SINGLE NONE 10
GBZ CBH CBJ SINGLE NONE 11
GBZ CBL CBJ DOUBLE NONE 12
GBZ CAZ CAY SINGLE NONE 13
GBZ CAW CAY SINGLE BEGINWEDGE 14
GBZ CBJ NAM SINGLE NONE 15
GBZ CAW NAV SINGLE NONE 16
GBZ CAO CAN SINGLE NONE 17
GBZ CAO CAP SINGLE NONE 18
GBZ OBE CAU DOUBLE NONE 19
GBZ NAM CAN SINGLE NONE 20
GBZ NAM CAL SINGLE NONE 21
GBZ NAV CAU SINGLE NONE 22
GBZ OAK CAH DOUBLE NONE 23
GBZ CAU N SINGLE NONE 24
GBZ CAN OBB DOUBLE NONE 25
GBZ CAJ CAL SINGLE NONE 26
GBZ CAJ NAI SINGLE NONE 27
GBZ CAP CB SINGLE NONE 28
GBZ CA CB SINGLE BEGINWEDGE 29
GBZ N CA SINGLE NONE 30
GBZ CAH NAI SINGLE NONE 31
GBZ CAH CAE SINGLE NONE 32
GBZ CAD CAE DOUBLE NONE 33
GBZ CAD CAC SINGLE NONE 34
GBZ CA C SINGLE NONE 35
GBZ CAE CAF SINGLE NONE 36
GBZ CAC CAA DOUBLE NONE 37
GBZ C OXT DOUBLE NONE 38
GBZ C O SINGLE NONE 39
GBZ CAF NAG DOUBLE NONE 40
GBZ CAA NAG SINGLE NONE 41
GBZ CAA FAB SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GBZ MurckoScaffold S1 scaffold O=C(NCCNc1ccccc1)c1cccnc1 InChI=1S/C14H15N3O/c18-14(12-5-4-8-15-11-12)17-10-9-16-13-6-2-1-3-7-13/h1-8,11,16H,9-10H2,(H,17,18) CNRYVFUNVKHYQB-UHFFFAOYSA-N
GBZ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
GBZ peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
GBZ phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GBZ pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GBZ NAM S1 1
GBZ CBJ S1 1
GBZ CBH S1 1
GBZ CBI S1 1
GBZ CBK S1 1
GBZ CBM S1 1
GBZ CBL S1 1
GBZ CAL S1 1
GBZ CAJ S1 1
GBZ NAI S1 1
GBZ CAH S1 1
GBZ OAK S1 1
GBZ CAE S1 1
GBZ CAD S1 1
GBZ CAC S1 1
GBZ CAA S1 1
GBZ NAG S1 1
GBZ CAF S1 1
GBZ NAM F1 1
GBZ CAN F1 1
GBZ OBB F1 1
GBZ CAO F1 1
GBZ NAI F1 2
GBZ CAH F1 2
GBZ OAK F1 2
GBZ CAE F1 2
GBZ OBG F2 1
GBZ CAX F2 1
GBZ CAW F2 1
GBZ NAV F2 1
GBZ OXT F2 2
GBZ C F2 2
GBZ CA F2 2
GBZ N F2 2
GBZ CBJ F3 1
GBZ CBH F3 1
GBZ CBI F3 1
GBZ CBK F3 1
GBZ CBM F3 1
GBZ CBL F3 1
GBZ CAA F4 1
GBZ CAC F4 1
GBZ CAD F4 1
GBZ CAE F4 1
GBZ CAF F4 1
GBZ NAG F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GBZ
_pdbe_chem_comp_rdkit_properties.exactmw 575.203
_pdbe_chem_comp_rdkit_properties.amw 575.550
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.346
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 275.692
_pdbe_chem_comp_rdkit_properties.tpsa 215.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.789
_pdbe_chem_comp_rdkit_properties.CrippenMR 139.469
_pdbe_chem_comp_rdkit_properties.chi0v 19.288
_pdbe_chem_comp_rdkit_properties.chi1v 9.736
_pdbe_chem_comp_rdkit_properties.chi2v 3.438
_pdbe_chem_comp_rdkit_properties.chi3v 3.438
_pdbe_chem_comp_rdkit_properties.chi4v 1.897
_pdbe_chem_comp_rdkit_properties.chi0n 49.288
_pdbe_chem_comp_rdkit_properties.chi1n 24.302
_pdbe_chem_comp_rdkit_properties.chi2n 3.438
_pdbe_chem_comp_rdkit_properties.chi3n 3.438
_pdbe_chem_comp_rdkit_properties.chi4n 1.897
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.080
_pdbe_chem_comp_rdkit_properties.kappa1 9.781
_pdbe_chem_comp_rdkit_properties.kappa2 16.123
_pdbe_chem_comp_rdkit_properties.kappa3 11.281
_pdbe_chem_comp_rdkit_properties.Phi 3.846
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GBZ UniChem ChEMBL CHEMBL4280968
GBZ UniChem PDBe GBZ
GBZ UniChem PubChem 135121381
GBZ UniChem BindingDb 50468167
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GBZ OBN -9.888 1.975 -0.924 ETKDGv3 1
GBZ CBA -8.954 2.275 -1.911 ETKDGv3 2
GBZ OBO -8.715 3.477 -2.206 ETKDGv3 3
GBZ CAZ -8.231 1.170 -2.617 ETKDGv3 4
GBZ CAY -7.305 0.382 -1.674 ETKDGv3 5
GBZ CAW -6.008 1.137 -1.311 ETKDGv3 6
GBZ CAX -6.271 2.277 -0.366 ETKDGv3 7
GBZ OBG -5.870 3.437 -0.651 ETKDGv3 8
GBZ OBF -6.936 2.051 0.836 ETKDGv3 9
GBZ NAV -5.057 0.208 -0.693 ETKDGv3 10
GBZ CAU -4.165 -0.608 -1.466 ETKDGv3 11
GBZ OBE -4.128 -0.493 -2.722 ETKDGv3 12
GBZ N -3.318 -1.558 -0.805 ETKDGv3 13
GBZ CA -2.423 -2.453 -1.545 ETKDGv3 14
GBZ C -3.214 -3.595 -2.113 ETKDGv3 15
GBZ OXT -3.067 -3.926 -3.320 ETKDGv3 16
GBZ O -4.091 -4.307 -1.300 ETKDGv3 17
GBZ CB -1.307 -2.995 -0.632 ETKDGv3 18
GBZ CAP -0.372 -1.876 -0.151 ETKDGv3 19
GBZ CAO 0.755 -2.440 0.720 ETKDGv3 20
GBZ CAN 1.678 -1.338 1.170 ETKDGv3 21
GBZ OBB 1.584 -0.924 2.358 ETKDGv3 22
GBZ NAM 2.604 -0.705 0.259 ETKDGv3 23
GBZ CBJ 3.016 -1.370 -0.947 ETKDGv3 24
GBZ CBH 3.775 -2.642 -0.871 ETKDGv3 25
GBZ CBI 4.165 -3.261 -1.993 ETKDGv3 26
GBZ CBK 3.844 -2.675 -3.310 ETKDGv3 27
GBZ CBM 3.168 -1.521 -3.384 ETKDGv3 28
GBZ CBL 2.738 -0.835 -2.148 ETKDGv3 29
GBZ CAL 3.265 0.552 0.630 ETKDGv3 30
GBZ CAJ 4.557 0.266 1.401 ETKDGv3 31
GBZ NAI 5.223 1.510 1.787 ETKDGv3 32
GBZ CAH 6.461 1.496 2.515 ETKDGv3 33
GBZ OAK 7.061 0.400 2.698 ETKDGv3 34
GBZ CAE 7.052 2.749 3.043 ETKDGv3 35
GBZ CAD 8.369 2.829 3.309 ETKDGv3 36
GBZ CAC 8.948 4.081 3.831 ETKDGv3 37
GBZ CAA 8.152 5.133 4.048 ETKDGv3 38
GBZ FAB 8.668 6.291 4.526 ETKDGv3 39
GBZ NAG 6.744 5.034 3.783 ETKDGv3 40
GBZ CAF 6.208 3.942 3.317 ETKDGv3 41
GBZ H1 -10.380 2.712 -0.433 ETKDGv3 42
GBZ H2 -7.651 1.573 -3.476 ETKDGv3 43
GBZ H3 -8.992 0.474 -3.030 ETKDGv3 44
GBZ H4 -7.852 0.078 -0.755 ETKDGv3 45
GBZ H5 -7.024 -0.556 -2.201 ETKDGv3 46
GBZ H6 -5.558 1.551 -2.241 ETKDGv3 47
GBZ H7 -7.116 2.811 1.481 ETKDGv3 48
GBZ H8 -5.112 0.036 0.337 ETKDGv3 49
GBZ H9 -3.403 -1.660 0.232 ETKDGv3 50
GBZ H10 -1.945 -1.890 -2.379 ETKDGv3 51
GBZ H11 -4.624 -5.086 -1.668 ETKDGv3 52
GBZ H12 -0.707 -3.741 -1.199 ETKDGv3 53
GBZ H13 -1.756 -3.511 0.246 ETKDGv3 54
GBZ H14 0.063 -1.361 -1.034 ETKDGv3 55
GBZ H15 -0.949 -1.132 0.439 ETKDGv3 56
GBZ H16 1.323 -3.210 0.159 ETKDGv3 57
GBZ H17 0.316 -2.939 1.612 ETKDGv3 58
GBZ H18 4.015 -3.071 0.094 ETKDGv3 59
GBZ H19 4.717 -4.190 -1.937 ETKDGv3 60
GBZ H20 4.159 -3.179 -4.215 ETKDGv3 61
GBZ H21 2.933 -1.090 -4.348 ETKDGv3 62
GBZ H22 2.187 0.094 -2.220 ETKDGv3 63
GBZ H23 2.585 1.175 1.251 ETKDGv3 64
GBZ H24 3.505 1.142 -0.282 ETKDGv3 65
GBZ H25 4.321 -0.320 2.314 ETKDGv3 66
GBZ H26 5.241 -0.332 0.760 ETKDGv3 67
GBZ H27 4.813 2.424 1.490 ETKDGv3 68
GBZ H28 9.027 1.987 3.131 ETKDGv3 69
GBZ H29 10.010 4.145 4.032 ETKDGv3 70
GBZ H30 5.139 3.913 3.160 ETKDGv3 71
#