data_GDI
#
_chem_comp.id GDI
_chem_comp.name (2S)-N-[(2S)-1-AZANYLIDENE-3-[4-(4-CYANOPHENYL)PHENYL]PROPAN-2-YL]PIPERIDINE-2-CARBOXAMIDE
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H24 N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-10-31
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 360.452
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GDI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CDD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GDI N1 N1 N 0 1 N N N N N N 6.183 -11.852 6.301 -3.393 -2.373 1.133 N1 GDI 1
GDI C2 C2 C 0 1 N N N N N N 5.011 -12.470 8.406 -4.930 -3.857 -0.065 C2 GDI 2
GDI C3 C3 C 0 1 N N N N N N 5.627 -12.961 7.087 -3.578 -3.745 0.643 C3 GDI 3
GDI C4 C4 C 0 1 N N S N N N 5.164 -10.833 6.013 -3.384 -1.410 0.024 C4 GDI 4
GDI C5 C5 C 0 1 N N N N N N 4.684 -10.224 7.333 -4.730 -1.453 -0.702 C5 GDI 5
GDI C6 C6 C 0 1 N N N N N N 4.027 -11.317 8.187 -4.973 -2.868 -1.233 C6 GDI 6
GDI C7 C7 C 0 1 N N N N N N 5.742 -9.754 5.121 -3.149 -0.023 0.565 C7 GDI 7
GDI O8 O8 O 0 1 N N N N N N 6.919 -9.807 4.802 -3.362 0.215 1.735 O8 GDI 8
GDI N9 N9 N 0 1 N N N N N N 4.932 -8.747 4.697 -2.703 0.952 -0.251 N9 GDI 9
GDI C10 C10 C 0 1 N N S N N N 5.372 -7.636 3.833 -2.475 2.300 0.276 C10 GDI 10
GDI C11 C11 C 0 1 N N N N N N 5.120 -6.406 4.583 -3.768 3.073 0.255 C11 GDI 11
GDI C12 C12 C 0 1 N N N N N N 4.564 -7.658 2.520 -1.438 3.017 -0.591 C12 GDI 12
GDI C13 C13 C 0 1 Y N N N N N 4.880 -8.906 1.727 -0.111 2.313 -0.473 C13 GDI 13
GDI C14 C14 C 0 1 Y N N N N N 4.038 -10.018 1.807 0.206 1.289 -1.347 C14 GDI 14
GDI C15 C15 C 0 1 Y N N N N N 4.312 -11.171 1.089 1.420 0.641 -1.243 C15 GDI 15
GDI C16 C16 C 0 1 Y N N N N N 5.452 -11.220 0.283 2.328 1.020 -0.256 C16 GDI 16
GDI C17 C17 C 0 1 Y N N N N N 6.292 -10.095 0.199 2.003 2.053 0.622 C17 GDI 17
GDI C18 C18 C 0 1 Y N N N N N 6.009 -8.944 0.922 0.789 2.698 0.506 C18 GDI 18
GDI C19 C19 C 0 1 Y N N N N N 5.795 -12.424 -0.516 3.633 0.327 -0.139 C19 GDI 19
GDI C20 C20 C 0 1 Y N N N N N 7.118 -12.546 -0.963 4.539 0.709 0.851 C20 GDI 20
GDI C21 C21 C 0 1 Y N N N N N 4.847 -13.414 -0.835 3.952 -0.711 -1.016 C21 GDI 21
GDI C22 C22 C 0 1 Y N N N N N 7.504 -13.639 -1.705 5.752 0.067 0.960 C22 GDI 22
GDI C23 C23 C 0 1 Y N N N N N 5.220 -14.516 -1.596 5.164 -1.355 -0.908 C23 GDI 23
GDI C24 C24 C 0 1 Y N N N N N 6.552 -14.623 -2.031 6.075 -0.969 0.079 C24 GDI 24
GDI C25 C25 C 0 1 N N N N N N 6.997 -15.731 -2.821 7.336 -1.638 0.191 C25 GDI 25
GDI N26 N26 N 0 1 N N N N N N 7.378 -16.600 -3.445 8.337 -2.168 0.280 N26 GDI 26
GDI N27 N27 N 0 1 N N N N N N 4.978 -5.288 4.027 -4.836 2.521 -0.182 N27 GDI 27
GDI H11 H11 H 0 1 N N N N N N 5.053 -6.461 5.660 -3.793 4.093 0.609 H11 GDI 28
GDI H1 H1 H 0 1 N N N N N N 6.928 -11.430 6.817 -4.099 -2.134 1.813 H1 GDI 29
GDI H31C H31C H 0 0 N N N N N N 4.848 -13.462 6.494 -2.780 -3.991 -0.058 H31C GDI 30
GDI H32C H32C H 0 0 N N N N N N 6.432 -13.676 7.314 -3.550 -4.438 1.484 H32C GDI 31
GDI H4 H4 H 0 1 N N N N N N 4.307 -11.299 5.504 -2.586 -1.667 -0.674 H4 GDI 32
GDI H21C H21C H 0 0 N N N N N N 4.478 -13.306 8.882 -5.061 -4.872 -0.442 H21C GDI 33
GDI H22C H22C H 0 0 N N N N N N 5.819 -12.126 9.069 -5.730 -3.625 0.638 H22C GDI 34
GDI H61C H61C H 0 0 N N N N N N 3.132 -11.694 7.671 -4.199 -3.124 -1.956 H61C GDI 35
GDI H62C H62C H 0 0 N N N N N N 3.738 -10.895 9.161 -5.951 -2.914 -1.714 H62C GDI 36
GDI H51C H51C H 0 0 N N N N N N 5.542 -9.800 7.875 -5.526 -1.182 -0.009 H51C GDI 37
GDI H52C H52C H 0 0 N N N N N N 3.952 -9.430 7.126 -4.717 -0.749 -1.535 H52C GDI 38
GDI H9 H9 H 0 1 N N N N N N 3.976 -8.761 4.990 -2.533 0.762 -1.186 H9 GDI 39
GDI H10 H10 H 0 1 N N N N N N 6.443 -7.733 3.603 -2.108 2.233 1.300 H10 GDI 40
GDI H121 H121 H 0 0 N N N N N N 3.490 -7.641 2.755 -1.764 3.006 -1.631 H121 GDI 41
GDI H122 H122 H 0 0 N N N N N N 4.822 -6.773 1.921 -1.333 4.049 -0.254 H122 GDI 42
GDI H27 H27 H 0 1 N N N N N N 4.813 -4.558 4.690 -5.669 3.018 -0.195 H27 GDI 43
GDI H14 H14 H 0 1 N N N N N N 3.162 -9.978 2.437 -0.498 0.996 -2.112 H14 GDI 44
GDI H18 H18 H 0 1 N N N N N N 6.662 -8.086 0.858 0.538 3.501 1.182 H18 GDI 45
GDI H15 H15 H 0 1 N N N N N N 3.651 -12.023 1.152 1.666 -0.159 -1.926 H15 GDI 46
GDI H17 H17 H 0 1 N N N N N N 7.166 -10.127 -0.434 2.702 2.351 1.390 H17 GDI 47
GDI H20 H20 H 0 1 N N N N N N 7.839 -11.778 -0.724 4.289 1.509 1.531 H20 GDI 48
GDI H21 H21 H 0 1 N N N N N N 3.829 -13.318 -0.488 3.248 -1.009 -1.778 H21 GDI 49
GDI H22 H22 H 0 1 N N N N N N 8.528 -13.741 -2.034 6.453 0.363 1.725 H22 GDI 50
GDI H23 H23 H 0 1 N N N N N N 4.498 -15.278 -1.849 5.411 -2.158 -1.587 H23 GDI 51
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GDI N1 C3 SING N N 1
GDI N1 C4 SING N N 2
GDI C2 C3 SING N N 3
GDI C2 C6 SING N N 4
GDI C4 C5 SING N N 5
GDI C4 C7 SING N N 6
GDI C5 C6 SING N N 7
GDI C7 O8 DOUB N N 8
GDI C7 N9 SING N N 9
GDI N9 C10 SING N N 10
GDI C10 C11 SING N N 11
GDI C10 C12 SING N N 12
GDI C11 N27 DOUB N N 13
GDI C11 H11 SING N N 14
GDI C12 C13 SING N N 15
GDI C13 C14 SING Y N 16
GDI C13 C18 DOUB Y N 17
GDI C14 C15 DOUB Y N 18
GDI C15 C16 SING Y N 19
GDI C16 C17 DOUB Y N 20
GDI C16 C19 SING N N 21
GDI C17 C18 SING Y N 22
GDI C19 C20 SING Y N 23
GDI C19 C21 DOUB Y N 24
GDI C20 C22 DOUB Y N 25
GDI C21 C23 SING Y N 26
GDI C22 C24 SING Y N 27
GDI C23 C24 DOUB Y N 28
GDI C24 C25 SING N N 29
GDI C25 N26 TRIP N N 30
GDI N1 H1 SING N N 31
GDI C3 H31C SING N N 32
GDI C3 H32C SING N N 33
GDI C4 H4 SING N N 34
GDI C2 H21C SING N N 35
GDI C2 H22C SING N N 36
GDI C6 H61C SING N N 37
GDI C6 H62C SING N N 38
GDI C5 H51C SING N N 39
GDI C5 H52C SING N N 40
GDI N9 H9 SING N N 41
GDI C10 H10 SING N N 42
GDI C12 H121 SING N N 43
GDI C12 H122 SING N N 44
GDI N27 H27 SING N N 45
GDI C14 H14 SING N N 46
GDI C18 H18 SING N N 47
GDI C15 H15 SING N N 48
GDI C17 H17 SING N N 49
GDI C20 H20 SING N N 50
GDI C21 H21 SING N N 51
GDI C22 H22 SING N N 52
GDI C23 H23 SING N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GDI SMILES ACDLabs 12.01 "O=C(NC(C=[N@H])Cc2ccc(c1ccc(C#N)cc1)cc2)C3NCCCC3"
GDI InChI InChI 1.03 InChI=1S/C22H24N4O/c23-14-17-6-10-19(11-7-17)18-8-4-16(5-9-18)13-20(15-24)26-22(27)21-3-1-2-12-25-21/h4-11,15,20-21,24-25H,1-3,12-13H2,(H,26,27)/b24-15+/t20-,21-/m0/s1
GDI InChIKey InChI 1.03 KWNFNOGHHWZOOZ-LZZAFKOHSA-N
GDI SMILES_CANONICAL CACTVS 3.385 "N=C[C@H](Cc1ccc(cc1)c2ccc(cc2)C#N)NC(=O)[C@@H]3CCCCN3"
GDI SMILES CACTVS 3.385 "N=C[CH](Cc1ccc(cc1)c2ccc(cc2)C#N)NC(=O)[CH]3CCCCN3"
GDI SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C/[C@H](Cc1ccc(cc1)c2ccc(cc2)C#N)NC(=O)[C@@H]3CCCCN3"
GDI SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1CC(C=N)NC(=O)C2CCCCN2)c3ccc(cc3)C#N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GDI "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-N-[(2S,3E)-1-(4'-cyanobiphenyl-4-yl)-3-iminopropan-2-yl]piperidine-2-carboxamide"
GDI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (2S)-N-[(2S)-1-azanylidene-3-[4-(4-cyanophenyl)phenyl]propan-2-yl]piperidine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GDI 'Create component' 2013-10-31 EBI
GDI 'Initial release' 2014-03-19 RCSB
GDI 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GDI N1 N -5.761 3.521 1
GDI C2 C -7.052 5.775 2
GDI C3 C -7.057 4.275 3
GDI C4 C -4.459 4.266 4
GDI C5 C -4.454 5.766 5
GDI C6 C -5.750 6.521 6
GDI C7 C -3.163 3.511 7
GDI O8 O -1.861 4.257 8
GDI N9 N -3.168 2.011 9
GDI C10 C -1.872 1.257 10
GDI C11 C -0.570 2.002 11
GDI C12 C -1.877 -0.243 12
GDI C13 C -0.581 -0.998 13
GDI C14 C -0.586 -2.498 14
GDI C15 C 0.710 -3.253 15
GDI C16 C 2.012 -2.507 16
GDI C17 C 2.017 -1.007 17
GDI C18 C 0.721 -0.253 18
GDI C19 C 3.308 -3.262 19
GDI C20 C 4.610 -2.516 20
GDI C21 C 3.303 -4.762 21
GDI C22 C 5.906 -3.271 22
GDI C23 C 4.599 -5.516 23
GDI C24 C 5.901 -4.771 24
GDI C25 C 7.197 -5.526 25
GDI N26 N 8.493 -6.280 26
GDI N27 N -0.565 3.502 27
GDI H27 H 0.737 4.247 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GDI N1 C3 SINGLE NONE 1
GDI N1 C4 SINGLE NONE 2
GDI C2 C3 SINGLE NONE 3
GDI C2 C6 SINGLE NONE 4
GDI C4 C5 SINGLE NONE 5
GDI C4 C7 SINGLE BEGINWEDGE 6
GDI C5 C6 SINGLE NONE 7
GDI C7 O8 DOUBLE NONE 8
GDI C7 N9 SINGLE NONE 9
GDI N9 C10 SINGLE NONE 10
GDI C10 C11 SINGLE ENDUPRIGHT 11
GDI C10 C12 SINGLE BEGINDASH 12
GDI C11 N27 DOUBLE NONE 13
GDI C12 C13 SINGLE NONE 14
GDI C13 C14 DOUBLE NONE 15
GDI C13 C18 SINGLE NONE 16
GDI C14 C15 SINGLE NONE 17
GDI C15 C16 DOUBLE NONE 18
GDI C16 C17 SINGLE NONE 19
GDI C16 C19 SINGLE NONE 20
GDI C17 C18 DOUBLE NONE 21
GDI C19 C20 DOUBLE NONE 22
GDI C19 C21 SINGLE NONE 23
GDI C20 C22 SINGLE NONE 24
GDI C21 C23 DOUBLE NONE 25
GDI C22 C24 DOUBLE NONE 26
GDI C23 C24 SINGLE NONE 27
GDI C24 C25 SINGLE NONE 28
GDI C25 N26 TRIPLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GDI MurckoScaffold S1 scaffold 'O=C(NCCc1ccc(-c2ccccc2)cc1)[C@@H]1CCCCN1' InChI=1S/C20H24N2O/c23-20(19-8-4-5-14-21-19)22-15-13-16-9-11-18(12-10-16)17-6-2-1-3-7-17/h1-3,6-7,9-12,19,21H,4-5,8,13-15H2,(H,22,23)/t19-/m0/s1 SOKJTHKCQVGGSY-IBGZPJMESA-N
GDI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
GDI peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
GDI phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GDI N1 S1 1
GDI C2 S1 1
GDI C3 S1 1
GDI C4 S1 1
GDI C5 S1 1
GDI C6 S1 1
GDI C7 S1 1
GDI O8 S1 1
GDI N9 S1 1
GDI C10 S1 1
GDI C12 S1 1
GDI C13 S1 1
GDI C14 S1 1
GDI C15 S1 1
GDI C16 S1 1
GDI C17 S1 1
GDI C18 S1 1
GDI C19 S1 1
GDI C20 S1 1
GDI C21 S1 1
GDI C22 S1 1
GDI C23 S1 1
GDI C24 S1 1
GDI N9 F1 1
GDI C7 F1 1
GDI O8 F1 1
GDI C4 F1 1
GDI O8 F2 1
GDI C7 F2 1
GDI C4 F2 1
GDI N1 F2 1
GDI C13 F3 1
GDI C14 F3 1
GDI C15 F3 1
GDI C16 F3 1
GDI C17 F3 1
GDI C18 F3 1
GDI C19 F3 2
GDI C20 F3 2
GDI C22 F3 2
GDI C24 F3 2
GDI C23 F3 2
GDI C21 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id GDI
_pdbe_chem_comp_rdkit_properties.exactmw 360.195
_pdbe_chem_comp_rdkit_properties.amw 360.461
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 51
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.318
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 193.365
_pdbe_chem_comp_rdkit_properties.tpsa 88.770
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.555
_pdbe_chem_comp_rdkit_properties.CrippenMR 104.799
_pdbe_chem_comp_rdkit_properties.chi0v 13.197
_pdbe_chem_comp_rdkit_properties.chi1v 7.046
_pdbe_chem_comp_rdkit_properties.chi2v 2.844
_pdbe_chem_comp_rdkit_properties.chi3v 2.844
_pdbe_chem_comp_rdkit_properties.chi4v 1.679
_pdbe_chem_comp_rdkit_properties.chi0n 37.197
_pdbe_chem_comp_rdkit_properties.chi1n 18.887
_pdbe_chem_comp_rdkit_properties.chi2n 2.844
_pdbe_chem_comp_rdkit_properties.chi3n 2.844
_pdbe_chem_comp_rdkit_properties.chi4n 1.679
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.970
_pdbe_chem_comp_rdkit_properties.kappa1 5.092
_pdbe_chem_comp_rdkit_properties.kappa2 9.108
_pdbe_chem_comp_rdkit_properties.kappa3 5.023
_pdbe_chem_comp_rdkit_properties.Phi 1.718
#
_pdbe_chem_comp_external_mappings.comp_id GDI
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id GDI
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GDI N1 -5.274 1.002 -1.962 ETKDGv3 1
GDI C2 -7.475 0.647 -0.766 ETKDGv3 2
GDI C3 -6.658 1.483 -1.778 ETKDGv3 3
GDI C4 -4.705 0.487 -0.705 ETKDGv3 4
GDI C5 -5.449 -0.786 -0.238 ETKDGv3 5
GDI C6 -6.933 -0.780 -0.650 ETKDGv3 6
GDI C7 -3.232 0.212 -0.861 ETKDGv3 7
GDI O8 -2.785 -0.211 -1.963 ETKDGv3 8
GDI N9 -2.354 0.366 0.264 ETKDGv3 9
GDI C10 -0.940 -0.013 0.221 ETKDGv3 10
GDI C11 -0.794 -1.430 0.712 ETKDGv3 11
GDI C12 -0.118 0.972 1.074 ETKDGv3 12
GDI C13 1.366 0.752 0.918 ETKDGv3 13
GDI C14 2.013 1.195 -0.173 ETKDGv3 14
GDI C15 3.462 0.956 -0.334 ETKDGv3 15
GDI C16 4.154 0.287 0.607 ETKDGv3 16
GDI C17 3.433 -0.211 1.809 ETKDGv3 17
GDI C18 2.121 0.008 1.954 ETKDGv3 18
GDI C19 5.611 0.045 0.450 ETKDGv3 19
GDI C20 6.441 0.132 1.508 ETKDGv3 20
GDI C21 6.178 -0.299 -0.882 ETKDGv3 21
GDI C22 7.891 -0.105 1.346 ETKDGv3 22
GDI C23 7.491 -0.513 -1.025 ETKDGv3 23
GDI C24 8.393 -0.410 0.142 ETKDGv3 24
GDI C25 9.804 -0.641 -0.022 ETKDGv3 25
GDI N26 10.939 -0.826 -0.154 ETKDGv3 26
GDI N27 -1.235 -2.404 0.004 ETKDGv3 27
GDI H11 -0.323 -1.636 1.670 ETKDGv3 28
GDI H1 -5.282 0.234 -2.676 ETKDGv3 29
GDI H31C -7.178 1.472 -2.761 ETKDGv3 30
GDI H32C -6.631 2.541 -1.440 ETKDGv3 31
GDI H4 -4.817 1.273 0.077 ETKDGv3 32
GDI H21C -8.541 0.617 -1.077 ETKDGv3 33
GDI H22C -7.430 1.130 0.235 ETKDGv3 34
GDI H61C -7.047 -1.288 -1.633 ETKDGv3 35
GDI H62C -7.530 -1.348 0.095 ETKDGv3 36
GDI H51C -4.975 -1.698 -0.663 ETKDGv3 37
GDI H52C -5.373 -0.858 0.870 ETKDGv3 38
GDI H9 -2.773 0.617 1.189 ETKDGv3 39
GDI H10 -0.565 0.044 -0.825 ETKDGv3 40
GDI H121 -0.362 2.013 0.765 ETKDGv3 41
GDI H122 -0.408 0.881 2.145 ETKDGv3 42
GDI H27 -1.143 -3.376 0.334 ETKDGv3 43
GDI H14 1.480 1.733 -0.949 ETKDGv3 44
GDI H18 1.612 -0.367 2.833 ETKDGv3 45
GDI H15 3.954 1.349 -1.214 ETKDGv3 46
GDI H17 3.962 -0.773 2.569 ETKDGv3 47
GDI H20 6.068 0.398 2.489 ETKDGv3 48
GDI H21 5.530 -0.397 -1.743 ETKDGv3 49
GDI H22 8.538 -0.025 2.212 ETKDGv3 50
GDI H23 7.891 -0.769 -1.999 ETKDGv3 51
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