data_GEG
#
_chem_comp.id GEG
_chem_comp.name "(4E)-4-AMINOHEX-4-ENOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H11 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-06-03
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 129.157
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GEG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1OHY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GEG "C1'" "C1'" C 0 1 N N N N N N 11.829 -3.034 17.336 -0.015 -0.023 -2.054 "C1'" GEG 1
GEG "O1'" "O1'" O 0 1 N N N N N N 11.843 -3.988 16.528 0.072 1.167 -2.238 "O1'" GEG 2
GEG "O2'" "O2'" O 0 1 N N N N N N 12.425 -3.136 18.448 0.059 -0.870 -3.092 "O2'" GEG 3
GEG C1 C1 C 0 1 N N N N N N 11.060 -1.801 16.908 -0.207 -0.558 -0.658 C1 GEG 4
GEG C2 C2 C 0 1 N N N N N N 11.578 -0.548 17.598 -0.258 0.606 0.331 C2 GEG 5
GEG C3 C3 C 0 1 N N N N N N 10.516 0.121 18.483 -0.451 0.072 1.727 C3 GEG 6
GEG C4 C4 C 0 1 N N N N N N 10.410 1.426 18.622 0.597 -0.225 2.471 C4 GEG 7
GEG C5 C5 C 0 1 N N N N N N 11.332 2.406 17.920 1.988 -0.029 1.924 C5 GEG 8
GEG N3 N3 N 0 1 N N N N N N 9.552 -0.654 19.254 -1.733 -0.107 2.231 N3 GEG 9
GEG "H2'" "H2'" H 0 1 N N N N N N 12.414 -2.411 19.061 0.183 -0.527 -3.988 "H2'" GEG 10
GEG H1C1 1H1C H 0 0 N N N N N N 11.162 -1.677 15.820 0.623 -1.216 -0.403 H1C1 GEG 11
GEG H1C2 2H1C H 0 0 N N N N N N 10.006 -1.938 17.192 -1.142 -1.117 -0.609 H1C2 GEG 12
GEG H2C1 1H2C H 0 0 N N N N N N 12.438 -0.822 18.226 -1.089 1.264 0.076 H2C1 GEG 13
GEG H2C2 2H2C H 0 0 N N N N N N 11.860 0.171 16.815 0.675 1.166 0.282 H2C2 GEG 14
GEG H4 H4 H 0 1 N N N N N N 9.647 1.809 19.252 0.459 -0.608 3.471 H4 GEG 15
GEG H5C1 1H5C H 0 0 N N N N N N 10.731 3.155 17.383 2.719 -0.326 2.676 H5C1 GEG 16
GEG H5C2 2H5C H 0 0 N N N N N N 11.967 2.910 18.664 2.116 -0.641 1.031 H5C2 GEG 17
GEG H5C3 3H5C H 0 0 N N N N N N 11.966 1.863 17.204 2.134 1.020 1.670 H5C3 GEG 18
GEG H3N1 1H3N H 0 0 N N N N N N 9.569 -1.648 19.217 -2.504 0.110 1.684 H3N1 GEG 19
GEG H3N2 2H3N H 0 0 N N N N N N 8.877 -0.189 19.818 -1.857 -0.452 3.129 H3N2 GEG 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GEG "C1'" "O1'" DOUB N N 1
GEG "C1'" "O2'" SING N N 2
GEG "C1'" C1 SING N N 3
GEG "O2'" "H2'" SING N N 4
GEG C1 C2 SING N N 5
GEG C1 H1C1 SING N N 6
GEG C1 H1C2 SING N N 7
GEG C2 C3 SING N N 8
GEG C2 H2C1 SING N N 9
GEG C2 H2C2 SING N N 10
GEG C3 C4 DOUB N E 11
GEG C3 N3 SING N N 12
GEG C4 C5 SING N N 13
GEG C4 H4 SING N N 14
GEG C5 H5C1 SING N N 15
GEG C5 H5C2 SING N N 16
GEG C5 H5C3 SING N N 17
GEG N3 H3N1 SING N N 18
GEG N3 H3N2 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GEG SMILES ACDLabs 10.04 O=C(O)CCC(=C/C)\N
GEG SMILES_CANONICAL CACTVS 3.341 C\C=C(N)/CCC(O)=O
GEG SMILES CACTVS 3.341 CC=C(N)CCC(O)=O
GEG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C\C=C(/CCC(=O)O)\N
GEG SMILES "OpenEye OEToolkits" 1.5.0 CC=C(CCC(=O)O)N
GEG InChI InChI 1.03 InChI=1S/C6H11NO2/c1-2-5(7)3-4-6(8)9/h2H,3-4,7H2,1H3,(H,8,9)/b5-2+
GEG InChIKey InChI 1.03 KQFBUAIXCIGKAP-GORDUTHDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GEG "SYSTEMATIC NAME" ACDLabs 10.04 "(4E)-4-aminohex-4-enoic acid"
GEG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(E)-4-aminohex-4-enoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GEG 'Create component' 2003-06-03 EBI
GEG 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id GEG
_pdbe_chem_comp_drugbank_details.drugbank_id DB01699
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '(4e)-4-Aminohex-4-Enoic Acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id GEG
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01699
_pdbe_chem_comp_drugbank_classification.parent 'Gamma amino acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as gamma amino acids and derivatives. These are amino acids having a (-NH2) group attached to the gamma carbon atom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id GEG
_pdbe_chem_comp_drugbank_targets.drugbank_id DB01699
_pdbe_chem_comp_drugbank_targets.name '4-aminobutyrate aminotransferase, mitochondrial'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P80404
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GEG "C1'" C 9.002 0.750 1
GEG "O1'" O 10.301 0.000 2
GEG "O2'" O 9.002 2.250 3
GEG C1 C 7.702 0.000 4
GEG C2 C 6.404 0.750 5
GEG C3 C 5.104 0.000 6
GEG C4 C 5.104 -1.500 7
GEG C5 C 6.404 -2.250 8
GEG N3 N 3.805 0.750 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GEG "C1'" "O1'" DOUBLE NONE 1
GEG "C1'" "O2'" SINGLE NONE 2
GEG "C1'" C1 SINGLE NONE 3
GEG C1 C2 SINGLE NONE 4
GEG C2 C3 SINGLE ENDUPRIGHT 5
GEG C3 C4 DOUBLE NONE 6
GEG C3 N3 SINGLE ENDUPRIGHT 7
GEG C4 C5 SINGLE ENDDOWNRIGHT 8
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id GEG
_pdbe_chem_comp_rdkit_properties.exactmw 129.079
_pdbe_chem_comp_rdkit_properties.amw 129.159
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 69.827
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.714
_pdbe_chem_comp_rdkit_properties.CrippenMR 34.814
_pdbe_chem_comp_rdkit_properties.chi0v 4.264
_pdbe_chem_comp_rdkit_properties.chi1v 1.882
_pdbe_chem_comp_rdkit_properties.chi2v 0.401
_pdbe_chem_comp_rdkit_properties.chi3v 0.401
_pdbe_chem_comp_rdkit_properties.chi4v 0.141
_pdbe_chem_comp_rdkit_properties.chi0n 15.264
_pdbe_chem_comp_rdkit_properties.chi1n 7.185
_pdbe_chem_comp_rdkit_properties.chi2n 0.401
_pdbe_chem_comp_rdkit_properties.chi3n 0.401
_pdbe_chem_comp_rdkit_properties.chi4n 0.141
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.990
_pdbe_chem_comp_rdkit_properties.kappa1 1.214
_pdbe_chem_comp_rdkit_properties.kappa2 3.946
_pdbe_chem_comp_rdkit_properties.kappa3 4.871
_pdbe_chem_comp_rdkit_properties.Phi 0.532
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GEG UniChem DrugBank DB01699
GEG UniChem PDBe GEG
GEG UniChem ZINC ZINC000103542879
GEG UniChem SureChEMBL SCHEMBL4320657
GEG UniChem PubChem 5288385
GEG UniChem 'Probes And Drugs' PD060281
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GEG "C1'" 2.541 -0.578 -0.182 ETKDGv3 1
GEG "O1'" 2.715 -1.508 -1.014 ETKDGv3 2
GEG "O2'" 3.573 0.315 0.089 ETKDGv3 3
GEG C1 1.211 -0.403 0.479 ETKDGv3 4
GEG C2 0.320 0.529 -0.347 ETKDGv3 5
GEG C3 -1.022 0.713 0.323 ETKDGv3 6
GEG C4 -2.084 -0.067 0.047 ETKDGv3 7
GEG C5 -2.074 -1.166 -0.973 ETKDGv3 8
GEG N3 -1.142 1.717 1.337 ETKDGv3 9
GEG "H2'" 4.474 0.220 -0.363 ETKDGv3 10
GEG H1C1 0.724 -1.395 0.595 ETKDGv3 11
GEG H1C2 1.365 0.026 1.493 ETKDGv3 12
GEG H2C1 0.814 1.521 -0.438 ETKDGv3 13
GEG H2C2 0.208 0.135 -1.379 ETKDGv3 14
GEG H4 -3.009 0.096 0.587 ETKDGv3 15
GEG H5C1 -1.902 -0.747 -1.986 ETKDGv3 16
GEG H5C2 -1.287 -1.911 -0.733 ETKDGv3 17
GEG H5C3 -3.057 -1.683 -0.972 ETKDGv3 18
GEG H3N1 -0.323 2.310 1.596 ETKDGv3 19
GEG H3N2 -2.043 1.876 1.842 ETKDGv3 20
#