data_GF8
#
_chem_comp.id GF8
_chem_comp.name '2-(3,4-dichlorophenyl)-~{N}-(2-sulfanylethyl)ethanamide'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C10 H11 Cl2 N O S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-09-14
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 264.171
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GF8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HN2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GF8 C13 C1 C 0 1 Y N N N N N 18.641 20.731 2.087 2.719 -0.578 -0.235 C13 GF8 1
GF8 C15 C2 C 0 1 Y N N N N N 17.857 20.009 1.193 1.459 -0.611 -0.805 C15 GF8 2
GF8 C02 C3 C 0 1 N N N N N N 19.522 18.503 -2.423 -5.380 -0.069 -0.391 C02 GF8 3
GF8 C03 C4 C 0 1 N N N N N N 18.155 18.962 -2.924 -3.987 -0.033 0.241 C03 GF8 4
GF8 C05 C5 C 0 1 N N N N N N 16.512 18.972 -1.145 -1.679 0.275 -0.475 C05 GF8 5
GF8 C07 C6 C 0 1 N N N N N N 15.709 19.764 -0.133 -0.648 0.518 -1.547 C07 GF8 6
GF8 C08 C7 C 0 1 Y N N N N N 16.604 20.504 0.842 0.724 0.554 -0.925 C08 GF8 7
GF8 C09 C8 C 0 1 Y N N N N N 16.161 21.703 1.387 1.247 1.751 -0.473 C09 GF8 8
GF8 C10 C9 C 0 1 Y N N N N N 16.945 22.417 2.290 2.506 1.786 0.097 C10 GF8 9
GF8 C11 C10 C 0 1 Y N N N N N 18.194 21.921 2.630 3.240 0.620 0.222 C11 GF8 10
GF8 N04 N1 N 0 1 N N N N N N 17.380 19.639 -1.900 -2.985 0.203 -0.801 N04 GF8 11
GF8 O06 O1 O 0 1 N N N N N N 16.353 17.767 -1.252 -1.334 0.144 0.680 O06 GF8 12
GF8 S01 S1 S 0 1 N N N N N N 20.504 19.919 -1.871 -6.622 -0.362 0.899 S01 GF8 13
GF8 CL1 CL1 CL 0 0 N N N N N N 19.254 22.807 3.776 4.818 0.661 0.946 CL1 GF8 14
GF8 CL2 CL2 CL 0 0 N N N N N N 20.259 20.140 2.569 3.643 -2.041 -0.085 CL2 GF8 15
GF8 H1 H1 H 0 1 N N N N N N 18.215 19.079 0.778 1.050 -1.546 -1.158 H1 GF8 16
GF8 H2 H2 H 0 1 N N N N N N 19.384 17.808 -1.582 -5.583 0.883 -0.880 H2 GF8 17
GF8 H3 H3 H 0 1 N N N N N N 20.053 17.990 -3.239 -5.425 -0.872 -1.126 H3 GF8 18
GF8 H4 H4 H 0 1 N N N N N N 18.303 19.653 -3.767 -3.943 0.770 0.977 H4 GF8 19
GF8 H5 H5 H 0 1 N N N N N N 17.592 18.081 -3.266 -3.785 -0.986 0.730 H5 GF8 20
GF8 H6 H6 H 0 1 N N N N N N 15.084 20.495 -0.668 -0.692 -0.285 -2.283 H6 GF8 21
GF8 H7 H7 H 0 1 N N N N N N 15.065 19.073 0.430 -0.850 1.471 -2.036 H7 GF8 22
GF8 H8 H8 H 0 1 N N N N N N 15.192 22.088 1.106 0.672 2.661 -0.567 H8 GF8 23
GF8 H9 H9 H 0 1 N N N N N N 16.586 23.341 2.718 2.914 2.721 0.449 H9 GF8 24
GF8 H10 H10 H 0 1 N N N N N N 17.501 20.622 -1.760 -3.261 0.308 -1.725 H10 GF8 25
GF8 H11 H11 H 0 1 N N N N N N 21.608 19.349 -1.488 -7.778 -0.369 0.211 H11 GF8 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GF8 C03 C02 SING N N 1
GF8 C03 N04 SING N N 2
GF8 C02 S01 SING N N 3
GF8 N04 C05 SING N N 4
GF8 O06 C05 DOUB N N 5
GF8 C05 C07 SING N N 6
GF8 C07 C08 SING N N 7
GF8 C08 C15 DOUB Y N 8
GF8 C08 C09 SING Y N 9
GF8 C15 C13 SING Y N 10
GF8 C09 C10 DOUB Y N 11
GF8 C13 CL2 SING N N 12
GF8 C13 C11 DOUB Y N 13
GF8 C10 C11 SING Y N 14
GF8 C11 CL1 SING N N 15
GF8 C15 H1 SING N N 16
GF8 C02 H2 SING N N 17
GF8 C02 H3 SING N N 18
GF8 C03 H4 SING N N 19
GF8 C03 H5 SING N N 20
GF8 C07 H6 SING N N 21
GF8 C07 H7 SING N N 22
GF8 C09 H8 SING N N 23
GF8 C10 H9 SING N N 24
GF8 N04 H10 SING N N 25
GF8 S01 H11 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GF8 InChI InChI 1.03 'InChI=1S/C10H11Cl2NOS/c11-8-2-1-7(5-9(8)12)6-10(14)13-3-4-15/h1-2,5,15H,3-4,6H2,(H,13,14)'
GF8 InChIKey InChI 1.03 ZRTLNSGWIWNTPL-UHFFFAOYSA-N
GF8 SMILES_CANONICAL CACTVS 3.385 'SCCNC(=O)Cc1ccc(Cl)c(Cl)c1'
GF8 SMILES CACTVS 3.385 'SCCNC(=O)Cc1ccc(Cl)c(Cl)c1'
GF8 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.6 'c1cc(c(cc1CC(=O)NCCS)Cl)Cl'
GF8 SMILES 'OpenEye OEToolkits' 2.0.6 'c1cc(c(cc1CC(=O)NCCS)Cl)Cl'
#
_pdbx_chem_comp_identifier.comp_id GF8
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier '2-(3,4-dichlorophenyl)-~{N}-(2-sulfanylethyl)ethanamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GF8 'Create component' 2018-09-14 RCSB
GF8 'Initial release' 2019-02-27 RCSB
GF8 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id GF8
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom S01
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 6HN2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GF8 C13 C 4.299 -3.840 1
GF8 C15 C 4.299 -2.340 2
GF8 C02 C 8.196 4.410 3
GF8 C03 C 8.196 2.910 4
GF8 C05 C 6.897 0.660 5
GF8 C07 C 5.598 -0.090 6
GF8 C08 C 5.598 -1.590 7
GF8 C09 C 6.897 -2.340 8
GF8 C10 C 6.897 -3.840 9
GF8 C11 C 5.598 -4.590 10
GF8 N04 N 6.897 2.160 11
GF8 O06 O 8.196 -0.090 12
GF8 S01 S 9.495 5.160 13
GF8 CL1 Cl 5.598 -6.090 14
GF8 CL2 Cl 3.000 -4.590 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GF8 C03 C02 SINGLE NONE 1
GF8 C03 N04 SINGLE NONE 2
GF8 C02 S01 SINGLE NONE 3
GF8 N04 C05 SINGLE NONE 4
GF8 O06 C05 DOUBLE NONE 5
GF8 C05 C07 SINGLE NONE 6
GF8 C07 C08 SINGLE NONE 7
GF8 C08 C15 SINGLE NONE 8
GF8 C08 C09 DOUBLE NONE 9
GF8 C15 C13 DOUBLE NONE 10
GF8 C09 C10 SINGLE NONE 11
GF8 C13 CL2 SINGLE NONE 12
GF8 C13 C11 SINGLE NONE 13
GF8 C10 C11 DOUBLE NONE 14
GF8 C11 CL1 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GF8 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GF8 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
GF8 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GF8 C13 S1 1
GF8 C15 S1 1
GF8 C08 S1 1
GF8 C09 S1 1
GF8 C10 S1 1
GF8 C11 S1 1
GF8 N04 F1 1
GF8 C05 F1 1
GF8 O06 F1 1
GF8 C07 F1 1
GF8 C13 F2 1
GF8 C15 F2 1
GF8 C08 F2 1
GF8 C09 F2 1
GF8 C10 F2 1
GF8 C11 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GF8
_pdbe_chem_comp_rdkit_properties.exactmw 262.994
_pdbe_chem_comp_rdkit_properties.amw 264.177
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 119.558
_pdbe_chem_comp_rdkit_properties.tpsa 29.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.527
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.763
_pdbe_chem_comp_rdkit_properties.chi0v 9.348
_pdbe_chem_comp_rdkit_properties.chi1v 4.648
_pdbe_chem_comp_rdkit_properties.chi2v 1.915
_pdbe_chem_comp_rdkit_properties.chi3v 1.915
_pdbe_chem_comp_rdkit_properties.chi4v 0.921
_pdbe_chem_comp_rdkit_properties.chi0n 18.020
_pdbe_chem_comp_rdkit_properties.chi1n 8.839
_pdbe_chem_comp_rdkit_properties.chi2n 1.160
_pdbe_chem_comp_rdkit_properties.chi3n 1.160
_pdbe_chem_comp_rdkit_properties.chi4n 0.639
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.380
_pdbe_chem_comp_rdkit_properties.kappa1 4.132
_pdbe_chem_comp_rdkit_properties.kappa2 6.257
_pdbe_chem_comp_rdkit_properties.kappa3 4.325
_pdbe_chem_comp_rdkit_properties.Phi 1.723
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GF8 UniChem PDBe GF8
GF8 UniChem SureChEMBL SCHEMBL23903564
GF8 UniChem PubChem 137333970
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GF8 C13 -2.734 -0.725 -1.050 ETKDGv3 1
GF8 C15 -1.722 -1.202 -0.312 ETKDGv3 2
GF8 C02 2.432 1.171 -1.123 ETKDGv3 3
GF8 C03 2.902 -0.096 -0.410 ETKDGv3 4
GF8 C05 1.067 -0.373 1.323 ETKDGv3 5
GF8 C07 -0.185 -1.067 1.762 ETKDGv3 6
GF8 C08 -1.357 -0.554 0.972 ETKDGv3 7
GF8 C09 -2.039 0.530 1.380 ETKDGv3 8
GF8 C10 -3.159 1.053 0.573 ETKDGv3 9
GF8 C11 -3.494 0.462 -0.582 ETKDGv3 10
GF8 N04 1.762 -0.817 0.149 ETKDGv3 11
GF8 O06 1.480 0.629 1.968 ETKDGv3 12
GF8 S01 3.848 2.057 -1.846 ETKDGv3 13
GF8 CL1 -4.828 1.106 -1.527 ETKDGv3 14
GF8 CL2 -3.142 -1.513 -2.567 ETKDGv3 15
GF8 H1 -1.164 -2.065 -0.654 ETKDGv3 16
GF8 H2 1.925 1.848 -0.405 ETKDGv3 17
GF8 H3 1.716 0.908 -1.931 ETKDGv3 18
GF8 H4 3.622 0.158 0.398 ETKDGv3 19
GF8 H5 3.423 -0.752 -1.141 ETKDGv3 20
GF8 H6 -0.348 -0.903 2.850 ETKDGv3 21
GF8 H7 -0.075 -2.162 1.612 ETKDGv3 22
GF8 H8 -1.773 1.035 2.301 ETKDGv3 23
GF8 H9 -3.704 1.921 0.921 ETKDGv3 24
GF8 H10 1.458 -1.703 -0.315 ETKDGv3 25
GF8 H11 4.089 1.053 -2.804 ETKDGv3 26
#