data_GGU
#
_chem_comp.id GGU
_chem_comp.name 2-(6-amino-5-phenylpyridazin-3-yl)phenol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H13 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-12-21
_chem_comp.pdbx_modified_date 2022-08-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 263.294
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GGU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TAB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GGU C1 C1 C 0 1 Y N N N N N -5.464 -1.554 22.975 3.608 -0.350 -0.009 C1 GGU 1
GGU C2 C2 C 0 1 Y N N N N N -4.384 -0.884 22.394 4.809 0.339 -0.065 C2 GGU 2
GGU C3 C3 C 0 1 Y N N N N N -4.559 0.197 21.624 4.812 1.718 -0.157 C3 GGU 3
GGU C4 C4 C 0 1 Y N N N N N -5.777 0.676 21.382 3.619 2.418 -0.194 C4 GGU 4
GGU C5 C5 C 0 1 Y N N N N N -6.877 0.041 21.918 2.416 1.745 -0.139 C5 GGU 5
GGU C6 C6 C 0 1 Y N N N N N -6.740 -1.043 22.760 2.401 0.355 -0.051 C6 GGU 6
GGU C9 C7 C 0 1 Y N N N N N -9.248 -1.113 23.413 -0.094 0.333 -0.025 C9 GGU 7
GGU C10 C8 C 0 1 Y N N N N N -10.300 -1.816 23.990 -1.280 -0.398 0.033 C10 GGU 8
GGU C14 C9 C 0 1 Y N N N N N -14.017 0.239 24.394 -5.067 1.532 -0.058 C14 GGU 9
GGU N1 N1 N 0 1 Y N N N N N -7.803 -2.893 23.833 1.098 -1.698 0.091 N1 GGU 10
GGU O1 O1 O 0 1 N N N N N N -5.216 -2.602 23.741 3.603 -1.705 0.081 O1 GGU 11
GGU C7 C10 C 0 1 Y N N N N N -7.980 -1.678 23.343 1.110 -0.373 0.008 C7 GGU 12
GGU N2 N2 N 0 1 Y N N N N N -8.818 -3.608 24.379 0.010 -2.373 0.154 N2 GGU 13
GGU C8 C11 C 0 1 Y N N N N N -10.020 -3.112 24.455 -1.183 -1.798 0.125 C8 GGU 14
GGU N3 N3 N 0 1 N N N N N N -10.966 -3.884 24.998 -2.333 -2.575 0.186 N3 GGU 15
GGU C11 C12 C 0 1 Y N N N N N -11.594 -1.116 24.119 -2.600 0.277 -0.001 C11 GGU 16
GGU C12 C13 C 0 1 Y N N N N N -12.354 -1.199 25.258 -3.583 -0.153 -0.891 C12 GGU 17
GGU C13 C14 C 0 1 Y N N N N N -13.556 -0.570 25.380 -4.810 0.480 -0.918 C13 GGU 18
GGU C15 C15 C 0 1 Y N N N N N -13.312 0.322 23.268 -4.097 1.960 0.831 C15 GGU 19
GGU C16 C16 C 0 1 Y N N N N N -12.133 -0.331 23.113 -2.865 1.338 0.863 C16 GGU 20
GGU H1 H1 H 0 1 N N N N N N -3.383 -1.248 22.571 5.743 -0.202 -0.037 H1 GGU 21
GGU H2 H2 H 0 1 N N N N N N -3.699 0.688 21.193 5.750 2.251 -0.200 H2 GGU 22
GGU H3 H3 H 0 1 N N N N N N -5.903 1.557 20.770 3.630 3.496 -0.265 H3 GGU 23
GGU H4 H4 H 0 1 N N N N N N -7.866 0.400 21.674 1.487 2.295 -0.168 H4 GGU 24
GGU H5 H5 H 0 1 N N N N N N -9.417 -0.123 23.017 -0.106 1.411 -0.097 H5 GGU 25
GGU H6 H6 H 0 1 N N N N N N -14.931 0.801 24.519 -6.028 2.024 -0.083 H6 GGU 26
GGU H7 H7 H 0 1 N N N N N N -6.035 -2.957 24.067 3.609 -2.039 0.989 H7 GGU 27
GGU H8 H8 H 0 1 N N N N N N -10.567 -4.760 25.269 -3.205 -2.151 0.165 H8 GGU 28
GGU H9 H9 H 0 1 N N N N N N -11.347 -3.428 25.803 -2.263 -3.540 0.250 H9 GGU 29
GGU H10 H10 H 0 1 N N N N N N -11.986 -1.784 26.088 -3.386 -0.979 -1.557 H10 GGU 30
GGU H11 H11 H 0 1 N N N N N N -14.148 -0.717 26.271 -5.569 0.153 -1.612 H11 GGU 31
GGU H12 H12 H 0 1 N N N N N N -13.689 0.926 22.456 -4.304 2.782 1.500 H12 GGU 32
GGU H13 H13 H 0 1 N N N N N N -11.600 -0.236 22.179 -2.109 1.673 1.557 H13 GGU 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GGU C4 C3 DOUB Y N 1
GGU C4 C5 SING Y N 2
GGU C3 C2 SING Y N 3
GGU C5 C6 DOUB Y N 4
GGU C2 C1 DOUB Y N 5
GGU C6 C1 SING Y N 6
GGU C6 C7 SING N N 7
GGU C1 O1 SING N N 8
GGU C16 C15 DOUB Y N 9
GGU C16 C11 SING Y N 10
GGU C15 C14 SING Y N 11
GGU C7 C9 DOUB Y N 12
GGU C7 N1 SING Y N 13
GGU C9 C10 SING Y N 14
GGU N1 N2 DOUB Y N 15
GGU C10 C11 SING N N 16
GGU C10 C8 DOUB Y N 17
GGU C11 C12 DOUB Y N 18
GGU N2 C8 SING Y N 19
GGU C14 C13 DOUB Y N 20
GGU C8 N3 SING N N 21
GGU C12 C13 SING Y N 22
GGU C2 H1 SING N N 23
GGU C3 H2 SING N N 24
GGU C4 H3 SING N N 25
GGU C5 H4 SING N N 26
GGU C9 H5 SING N N 27
GGU C14 H6 SING N N 28
GGU O1 H7 SING N N 29
GGU N3 H8 SING N N 30
GGU N3 H9 SING N N 31
GGU C12 H10 SING N N 32
GGU C13 H11 SING N N 33
GGU C15 H12 SING N N 34
GGU C16 H13 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GGU SMILES ACDLabs 12.01 Oc1ccccc1c1cc(c(N)nn1)c1ccccc1
GGU InChI InChI 1.03 InChI=1S/C16H13N3O/c17-16-13(11-6-2-1-3-7-11)10-14(18-19-16)12-8-4-5-9-15(12)20/h1-10,20H,(H2,17,19)
GGU InChIKey InChI 1.03 SDAWPVIWTVUTCC-UHFFFAOYSA-N
GGU SMILES_CANONICAL CACTVS 3.385 Nc1nnc(cc1c2ccccc2)c3ccccc3O
GGU SMILES CACTVS 3.385 Nc1nnc(cc1c2ccccc2)c3ccccc3O
GGU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)c2cc(nnc2N)c3ccccc3O
GGU SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)c2cc(nnc2N)c3ccccc3O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GGU "SYSTEMATIC NAME" ACDLabs 12.01 2-(6-amino-5-phenylpyridazin-3-yl)phenol
GGU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 2-(6-azanyl-5-phenyl-pyridazin-3-yl)phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GGU 'Create component' 2021-12-21 RCSB
GGU 'Initial release' 2022-08-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GGU C1 C 5.598 -3.660 1
GGU C2 C 4.299 -4.410 2
GGU C3 C 3.000 -3.660 3
GGU C4 C 3.000 -2.160 4
GGU C5 C 4.299 -1.410 5
GGU C6 C 5.598 -2.160 6
GGU C9 C 6.897 0.090 7
GGU C10 C 8.196 0.840 8
GGU C14 C 8.196 5.340 9
GGU N1 N 8.196 -2.160 10
GGU O1 O 6.897 -4.410 11
GGU C7 C 6.897 -1.410 12
GGU N2 N 9.495 -1.410 13
GGU C8 C 9.495 0.090 14
GGU N3 N 10.794 0.840 15
GGU C11 C 8.196 2.340 16
GGU C12 C 6.897 3.090 17
GGU C13 C 6.897 4.590 18
GGU C15 C 9.495 4.590 19
GGU C16 C 9.495 3.090 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GGU C4 C3 DOUBLE NONE 1
GGU C4 C5 SINGLE NONE 2
GGU C3 C2 SINGLE NONE 3
GGU C5 C6 DOUBLE NONE 4
GGU C2 C1 DOUBLE NONE 5
GGU C6 C1 SINGLE NONE 6
GGU C6 C7 SINGLE NONE 7
GGU C1 O1 SINGLE NONE 8
GGU C16 C15 SINGLE NONE 9
GGU C16 C11 DOUBLE NONE 10
GGU C15 C14 DOUBLE NONE 11
GGU C7 C9 DOUBLE NONE 12
GGU C7 N1 SINGLE NONE 13
GGU C9 C10 SINGLE NONE 14
GGU N1 N2 DOUBLE NONE 15
GGU C10 C11 SINGLE NONE 16
GGU C10 C8 DOUBLE NONE 17
GGU C11 C12 SINGLE NONE 18
GGU N2 C8 SINGLE NONE 19
GGU C14 C13 SINGLE NONE 20
GGU C8 N3 SINGLE NONE 21
GGU C12 C13 DOUBLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GGU MurckoScaffold S1 scaffold c1ccc(-c2cnnc(-c3ccccc3)c2)cc1 InChI=1S/C16H12N2/c1-3-7-13(8-4-1)15-11-16(18-17-12-15)14-9-5-2-6-10-14/h1-12H RTNPJCQBMCRDSE-UHFFFAOYSA-N
GGU phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GGU pyridazine F2 fragment c1ccnnc1 InChI=1S/C4H4N2/c1-2-4-6-5-3-1/h1-4H PBMFSQRYOILNGV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GGU C1 S1 1
GGU C2 S1 1
GGU C3 S1 1
GGU C4 S1 1
GGU C5 S1 1
GGU C6 S1 1
GGU C9 S1 1
GGU C10 S1 1
GGU C14 S1 1
GGU N1 S1 1
GGU C7 S1 1
GGU N2 S1 1
GGU C8 S1 1
GGU C11 S1 1
GGU C12 S1 1
GGU C13 S1 1
GGU C15 S1 1
GGU C16 S1 1
GGU C1 F1 1
GGU C2 F1 1
GGU C3 F1 1
GGU C4 F1 1
GGU C5 F1 1
GGU C6 F1 1
GGU C14 F1 2
GGU C15 F1 2
GGU C16 F1 2
GGU C11 F1 2
GGU C12 F1 2
GGU C13 F1 2
GGU C9 F2 1
GGU C7 F2 1
GGU N1 F2 1
GGU N2 F2 1
GGU C8 F2 1
GGU C10 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GGU
_pdbe_chem_comp_rdkit_properties.exactmw 263.106
_pdbe_chem_comp_rdkit_properties.amw 263.300
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.555
_pdbe_chem_comp_rdkit_properties.tpsa 72.030
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.495
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.903
_pdbe_chem_comp_rdkit_properties.chi0v 9.750
_pdbe_chem_comp_rdkit_properties.chi1v 5.325
_pdbe_chem_comp_rdkit_properties.chi2v 2.352
_pdbe_chem_comp_rdkit_properties.chi3v 2.352
_pdbe_chem_comp_rdkit_properties.chi4v 1.476
_pdbe_chem_comp_rdkit_properties.chi0n 22.750
_pdbe_chem_comp_rdkit_properties.chi1n 11.628
_pdbe_chem_comp_rdkit_properties.chi2n 2.352
_pdbe_chem_comp_rdkit_properties.chi3n 2.352
_pdbe_chem_comp_rdkit_properties.chi4n 1.476
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.880
_pdbe_chem_comp_rdkit_properties.kappa1 4.312
_pdbe_chem_comp_rdkit_properties.kappa2 5.011
_pdbe_chem_comp_rdkit_properties.kappa3 2.188
_pdbe_chem_comp_rdkit_properties.Phi 1.080
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GGU UniChem ChEMBL CHEMBL5177096
GGU UniChem PDBe GGU
GGU UniChem SureChEMBL SCHEMBL18038695
GGU UniChem PubChem 137045897
GGU UniChem BindingDb 394583
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GGU C1 -3.811 -0.446 -0.181 ETKDGv3 1
GGU C2 -4.967 0.200 -0.391 ETKDGv3 2
GGU C3 -5.040 1.667 -0.257 ETKDGv3 3
GGU C4 -3.950 2.364 0.076 ETKDGv3 4
GGU C5 -2.676 1.665 0.336 ETKDGv3 5
GGU C6 -2.596 0.323 0.231 ETKDGv3 6
GGU C9 -0.153 0.042 0.103 ETKDGv3 7
GGU C10 1.085 -0.671 0.485 ETKDGv3 8
GGU C14 4.766 0.712 -1.273 ETKDGv3 9
GGU N1 -1.370 -1.496 1.474 ETKDGv3 10
GGU O1 -3.773 -1.825 -0.389 ETKDGv3 11
GGU C7 -1.336 -0.370 0.582 ETKDGv3 12
GGU N2 -0.305 -2.108 1.822 ETKDGv3 13
GGU C8 0.992 -1.711 1.344 ETKDGv3 14
GGU N3 2.145 -2.406 1.834 ETKDGv3 15
GGU C11 2.368 -0.214 -0.096 ETKDGv3 16
GGU C12 2.778 1.204 0.055 ETKDGv3 17
GGU C13 3.916 1.640 -0.500 ETKDGv3 18
GGU C15 4.396 -0.565 -1.425 ETKDGv3 19
GGU C16 3.138 -1.049 -0.819 ETKDGv3 20
GGU H1 -5.851 -0.349 -0.690 ETKDGv3 21
GGU H2 -5.977 2.179 -0.441 ETKDGv3 22
GGU H3 -4.001 3.441 0.170 ETKDGv3 23
GGU H4 -1.821 2.250 0.652 ETKDGv3 24
GGU H5 -0.098 0.881 -0.581 ETKDGv3 25
GGU H6 5.686 1.068 -1.717 ETKDGv3 26
GGU H7 -2.914 -2.359 -0.354 ETKDGv3 27
GGU H8 2.020 -3.234 2.457 ETKDGv3 28
GGU H9 3.117 -2.070 1.662 ETKDGv3 29
GGU H10 2.160 1.891 0.621 ETKDGv3 30
GGU H11 4.215 2.674 -0.385 ETKDGv3 31
GGU H12 5.015 -1.246 -1.995 ETKDGv3 32
GGU H13 2.843 -2.080 -0.973 ETKDGv3 33
#