data_GGZ
#
_chem_comp.id GGZ
_chem_comp.name
"(2S,3AR,4R,6R,6AR)-4-(6-AMINO-9H-PURIN-9-YL)-6-({[(R)-HYDROXY(SULFOOXY)PHOSPHORYL]OXY}METHYL)TETRAHYDROFURO[3,4-D][1,3,2]DIOXAPHOSPHOL-2-OL 2-OXIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 N5 O12 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-04-05
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 489.249
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GGZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GGZ C2 C2 C 0 1 Y N N N N N 20.583 -8.082 20.910 2.000 1.980 -3.099 C2 GGZ 1
GGZ C4 C4 C 0 1 Y N N N N N 19.377 -9.789 19.917 2.272 1.694 -0.923 C4 GGZ 2
GGZ C5 C5 C 0 1 Y N N N N N 20.551 -10.615 19.872 2.579 3.031 -0.728 C5 GGZ 3
GGZ C6 C6 C 0 1 Y N N N N N 21.724 -10.065 20.392 2.576 3.847 -1.855 C6 GGZ 4
GGZ C8 C8 C 0 1 N N N N N N 19.051 -11.490 19.135 2.685 2.121 1.196 C8 GGZ 5
GGZ N1 N1 N 0 1 Y N N N N N 21.713 -8.815 20.913 2.280 3.305 -3.061 N1 GGZ 6
GGZ O3P O3P O 0 1 N N N N N N 13.979 -8.387 22.363 -2.100 -2.246 0.247 O3P GGZ 7
GGZ P1 P1 P 0 1 N N N N N N 14.058 -8.885 20.935 -0.622 -2.846 0.504 P1 GGZ 8
GGZ "O2'" O2* O 0 1 N N N N N N 15.286 -9.929 20.834 0.175 -1.634 1.233 "O2'" GGZ 9
GGZ O1P O1P O 0 1 N N N N N N 12.868 -9.431 20.201 -0.570 -4.178 1.189 O1P GGZ 10
GGZ "O3'" O3* O 0 1 N N N N N N 14.723 -7.773 19.995 0.090 -2.760 -0.953 "O3'" GGZ 11
GGZ "C3'" C3* C 0 1 N N N N N N 16.095 -8.013 19.741 1.038 -1.695 -0.957 "C3'" GGZ 12
GGZ "C4'" C4* C 0 1 N N N N N N 16.380 -8.093 18.261 2.438 -2.191 -0.636 "C4'" GGZ 13
GGZ "C5'" C5* C 0 1 N N N N N N 17.402 -6.993 18.052 3.219 -2.615 -1.866 "C5'" GGZ 14
GGZ "O5'" O5* O 0 1 N N N N N N 17.666 -6.969 16.666 4.506 -3.047 -1.460 "O5'" GGZ 15
GGZ P2 P2 P 0 1 N N N N N N 17.984 -5.560 15.973 5.802 -2.270 -2.042 P2 GGZ 16
GGZ O4P O4P O 0 1 N N N N N N 18.019 -5.713 14.482 7.142 -2.767 -1.581 O4P GGZ 17
GGZ O5P O5P O 0 1 N N N N N N 17.108 -4.492 16.590 5.592 -2.322 -3.647 O5P GGZ 18
GGZ O6P O6P O 0 1 N N N N N N 19.477 -5.363 16.515 5.448 -0.730 -1.683 O6P GGZ 19
GGZ S2 S2 S 0 1 N N N N N N 20.551 -4.316 15.890 6.480 0.369 -2.310 S2 GGZ 20
GGZ OS3 OS3 O 0 1 N N N N N N 19.817 -3.103 15.566 6.469 0.253 -3.756 OS3 GGZ 21
GGZ OS2 OS2 O 0 1 N N N N N N 21.548 -4.157 16.982 5.766 1.784 -1.928 OS2 GGZ 22
GGZ OS1 OS1 O 0 1 N N N N N N 21.105 -4.996 14.717 7.728 0.299 -1.572 OS1 GGZ 23
GGZ "C2'" C2* C 0 1 N N N N N N 16.458 -9.382 20.284 0.735 -0.780 0.222 "C2'" GGZ 24
GGZ "C1'" C1* C 0 1 N N N N N N 16.959 -10.208 19.122 2.104 -0.277 0.656 "C1'" GGZ 25
GGZ "O4'" O4* O 0 1 N N N N N N 16.942 -9.385 17.956 3.100 -1.090 0.003 "O4'" GGZ 26
GGZ N9 N9 N 0 1 N N N N N N 18.366 -10.488 19.400 2.344 1.125 0.318 N9 GGZ 27
GGZ N7 N7 N 0 1 N N N N N N 20.256 -11.840 19.303 2.834 3.283 0.596 N7 GGZ 28
GGZ N6 N6 N 0 1 N N N N N N 22.900 -10.730 20.415 2.876 5.217 -1.750 N6 GGZ 29
GGZ N3 N3 N 0 1 Y N N N N N 19.409 -8.536 20.435 1.971 1.091 -2.082 N3 GGZ 30
GGZ H2 H2 H 0 1 N N N N N N 20.621 -7.079 21.309 1.767 1.579 -4.079 H2 GGZ 31
GGZ H8 H8 H 0 1 N N N N N N 18.474 -12.254 18.636 2.809 1.939 2.255 H8 GGZ 32
GGZ HO3P HO3P H 0 0 N N N N N N 13.962 -9.128 22.957 -2.836 -2.538 0.826 HO3P GGZ 33
GGZ "H3'" H3* H 0 1 N N N N N N 16.661 -7.191 20.204 1.001 -1.148 -1.905 "H3'" GGZ 34
GGZ "H4'" H4* H 0 1 N N N N N N 15.493 -7.974 17.621 2.416 -3.031 0.069 "H4'" GGZ 35
GGZ "H5'1" 1H5* H 0 0 N N N N N N 17.004 -6.024 18.389 3.325 -1.773 -2.553 "H5'1" GGZ 36
GGZ "H5'2" 2H5* H 0 0 N N N N N N 18.318 -7.179 18.633 2.708 -3.436 -2.372 "H5'2" GGZ 37
GGZ HO5P HO5P H 0 0 N N N N N N 16.924 -4.716 17.495 6.301 -1.975 -4.229 HO5P GGZ 38
GGZ HOS2 HOS2 H 0 0 N N N N N N 22.422 -4.123 16.611 5.454 1.861 -0.996 HOS2 GGZ 39
GGZ "H2'" H2* H 0 1 N N N N N N 17.239 -9.347 21.058 0.002 0.002 -0.001 "H2'" GGZ 40
GGZ "H1'" H1* H 0 1 N N N N N N 16.355 -11.117 18.983 2.255 -0.346 1.738 "H1'" GGZ 41
GGZ HN61 1HN6 H 0 0 N N N N N N 23.609 -10.158 20.827 3.501 5.531 -1.032 HN61 GGZ 42
GGZ HN62 2HN6 H 0 0 N N N N N N 23.041 -11.658 20.070 2.390 5.873 -2.331 HN62 GGZ 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GGZ C2 N3 DOUB Y N 1
GGZ C2 N1 SING Y N 2
GGZ C2 H2 SING N N 3
GGZ C4 N9 SING N N 4
GGZ C4 C5 DOUB Y N 5
GGZ C4 N3 SING Y N 6
GGZ C5 N7 SING N N 7
GGZ C5 C6 SING Y N 8
GGZ C6 N6 SING N N 9
GGZ C6 N1 DOUB Y N 10
GGZ C8 N7 DOUB N N 11
GGZ C8 N9 SING N N 12
GGZ C8 H8 SING N N 13
GGZ O3P P1 SING N N 14
GGZ O3P HO3P SING N N 15
GGZ P1 "O3'" SING N N 16
GGZ P1 O1P DOUB N N 17
GGZ P1 "O2'" SING N N 18
GGZ "O2'" "C2'" SING N N 19
GGZ "O3'" "C3'" SING N N 20
GGZ "C3'" "C4'" SING N N 21
GGZ "C3'" "C2'" SING N N 22
GGZ "C3'" "H3'" SING N N 23
GGZ "C4'" "O4'" SING N N 24
GGZ "C4'" "C5'" SING N N 25
GGZ "C4'" "H4'" SING N N 26
GGZ "C5'" "O5'" SING N N 27
GGZ "C5'" "H5'1" SING N N 28
GGZ "C5'" "H5'2" SING N N 29
GGZ "O5'" P2 SING N N 30
GGZ P2 O4P DOUB N N 31
GGZ P2 O6P SING N N 32
GGZ P2 O5P SING N N 33
GGZ O5P HO5P SING N N 34
GGZ O6P S2 SING N N 35
GGZ S2 OS1 DOUB N N 36
GGZ S2 OS3 DOUB N N 37
GGZ S2 OS2 SING N N 38
GGZ OS2 HOS2 SING N N 39
GGZ "C2'" "C1'" SING N N 40
GGZ "C2'" "H2'" SING N N 41
GGZ "C1'" "O4'" SING N N 42
GGZ "C1'" N9 SING N N 43
GGZ "C1'" "H1'" SING N N 44
GGZ N6 HN61 SING N N 45
GGZ N6 HN62 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GGZ SMILES ACDLabs 10.04 O=P3(OC4C(OC(n1c2ncnc(N)c2nc1)C4O3)COP(=O)(O)OS(=O)(=O)O)O
GGZ SMILES_CANONICAL CACTVS 3.341 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[S](O)(=O)=O)[C@H]4O[P@@](O)(=O)O[C@@H]34
GGZ SMILES CACTVS 3.341 Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[S](O)(=O)=O)[CH]4O[P](O)(=O)O[CH]34
GGZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO[P@@](=O)(O)OS(=O)(=O)O)O[P@@](=O)(O4)O)N
GGZ SMILES "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(O)OS(=O)(=O)O)OP(=O)(O4)O)N
GGZ InChI InChI 1.03 InChI=1S/C10H13N5O12P2S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7-6(25-29(18,19)26-7)4(24-10)1-23-28(16,17)27-30(20,21)22/h2-4,6-7,10H,1H2,(H,16,17)(H,18,19)(H2,11,12,13)(H,20,21,22)/t4-,6-,7-,10-/m1/s1
GGZ InChIKey InChI 1.03 BOTWXJFMSRDLBQ-KQYNXXCUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GGZ "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3aR,4R,6R,6aR)-4-(6-amino-9H-purin-9-yl)-6-({[(R)-hydroxy(sulfooxy)phosphoryl]oxy}methyl)tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-2-ol 2-oxide"
GGZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,2R,4R,5R,7S)-4-(6-aminopurin-9-yl)-7-hydroxy-7-oxo-3,6,8-trioxa-7$l^{5}-phosphabicyclo[3.3.0]octan-2-yl]methyl sulfo hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GGZ 'Create component' 2007-04-05 PDBJ
GGZ 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GGZ C2 C 4.582 -3.236 1
GGZ C4 C 7.180 -3.236 2
GGZ C5 C 7.180 -4.736 3
GGZ C6 C 5.880 -5.486 4
GGZ C8 C 9.474 -3.986 5
GGZ N1 N 4.582 -4.736 6
GGZ O3P O 14.003 0.733 7
GGZ P1 P 12.788 -0.146 8
GGZ "O2'" O 11.911 -1.352 9
GGZ O1P O 14.000 -1.030 10
GGZ "O3'" O 11.915 1.062 11
GGZ "C3'" C 10.495 0.608 12
GGZ "C4'" C 9.069 1.074 13
GGZ "C5'" C 8.608 2.501 14
GGZ "O5'" O 7.141 2.816 15
GGZ P2 P 6.680 4.243 16
GGZ O4P O 5.253 3.782 17
GGZ O5P O 8.108 4.704 18
GGZ O6P O 6.219 5.670 19
GGZ S2 S 4.753 5.985 20
GGZ OS3 O 5.067 7.451 21
GGZ OS2 O 4.438 4.518 22
GGZ OS1 O 3.286 6.299 23
GGZ "C2'" C 10.492 -0.892 24
GGZ "C1'" C 9.065 -1.353 25
GGZ "O4'" O 8.185 -0.138 26
GGZ N9 N 8.599 -2.779 27
GGZ N7 N 8.599 -5.194 28
GGZ N6 N 5.880 -6.986 29
GGZ N3 N 5.880 -2.486 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GGZ C2 N3 DOUBLE NONE 1
GGZ C2 N1 SINGLE NONE 2
GGZ C4 N9 SINGLE NONE 3
GGZ C4 C5 DOUBLE NONE 4
GGZ C4 N3 SINGLE NONE 5
GGZ C5 N7 SINGLE NONE 6
GGZ C5 C6 SINGLE NONE 7
GGZ C6 N6 SINGLE NONE 8
GGZ C6 N1 DOUBLE NONE 9
GGZ C8 N7 DOUBLE NONE 10
GGZ C8 N9 SINGLE NONE 11
GGZ P1 O3P SINGLE BEGINDASH 12
GGZ P1 "O3'" SINGLE NONE 13
GGZ P1 O1P DOUBLE NONE 14
GGZ P1 "O2'" SINGLE NONE 15
GGZ "O2'" "C2'" SINGLE NONE 16
GGZ "O3'" "C3'" SINGLE NONE 17
GGZ "C3'" "C4'" SINGLE NONE 18
GGZ "C3'" "C2'" SINGLE NONE 19
GGZ "C4'" "O4'" SINGLE NONE 20
GGZ "C4'" "C5'" SINGLE BEGINDASH 21
GGZ "C5'" "O5'" SINGLE NONE 22
GGZ "O5'" P2 SINGLE NONE 23
GGZ P2 O4P DOUBLE NONE 24
GGZ P2 O6P SINGLE NONE 25
GGZ P2 O5P SINGLE BEGINWEDGE 26
GGZ O6P S2 SINGLE NONE 27
GGZ S2 OS1 DOUBLE NONE 28
GGZ S2 OS3 DOUBLE NONE 29
GGZ S2 OS2 SINGLE NONE 30
GGZ "C2'" "C1'" SINGLE NONE 31
GGZ "C1'" "O4'" SINGLE NONE 32
GGZ "C1'" N9 SINGLE BEGINDASH 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GGZ MurckoScaffold S1 scaffold 'O=[PH]1O[C@H]2[C@H](n3cnc4cncnc43)OC[C@H]2O1' InChI=1S/C9H9N4O4P/c14-18-16-6-2-15-9(7(6)17-18)13-4-12-5-1-10-3-11-8(5)13/h1,3-4,6-7,9,18H,2H2/t6-,7-,9-/m1/s1 VQFAXFHZLZTZLB-ZXFLCMHBSA-N
GGZ adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
GGZ imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
GGZ phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
GGZ purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
GGZ pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
GGZ ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GGZ C2 S1 1
GGZ C4 S1 1
GGZ C5 S1 1
GGZ C6 S1 1
GGZ C8 S1 1
GGZ N1 S1 1
GGZ P1 S1 1
GGZ "O2'" S1 1
GGZ O1P S1 1
GGZ "O3'" S1 1
GGZ "C3'" S1 1
GGZ "C4'" S1 1
GGZ "C2'" S1 1
GGZ "C1'" S1 1
GGZ "O4'" S1 1
GGZ N9 S1 1
GGZ N7 S1 1
GGZ N3 S1 1
GGZ N1 F1 1
GGZ C6 F1 1
GGZ C5 F1 1
GGZ C4 F1 1
GGZ N3 F1 1
GGZ C2 F1 1
GGZ N9 F1 1
GGZ C8 F1 1
GGZ N7 F1 1
GGZ N6 F1 1
GGZ C4 F2 1
GGZ C5 F2 1
GGZ N7 F2 1
GGZ C8 F2 1
GGZ N9 F2 1
GGZ O3P F3 1
GGZ P1 F3 1
GGZ O1P F3 1
GGZ "O3'" F3 1
GGZ "O2'" F3 1
GGZ "O5'" F3 2
GGZ P2 F3 2
GGZ O4P F3 2
GGZ O6P F3 2
GGZ O5P F3 2
GGZ N7 F4 1
GGZ C8 F4 1
GGZ N9 F4 1
GGZ C4 F4 1
GGZ C5 F4 1
GGZ C6 F4 1
GGZ N1 F4 1
GGZ C2 F4 1
GGZ N3 F4 1
GGZ C5 F5 1
GGZ C4 F5 1
GGZ N3 F5 1
GGZ C2 F5 1
GGZ N1 F5 1
GGZ C6 F5 1
GGZ "C2'" F6 1
GGZ "C3'" F6 1
GGZ "C4'" F6 1
GGZ "O4'" F6 1
GGZ "C1'" F6 1
GGZ "C5'" F6 1
GGZ "O5'" F6 1
GGZ "O3'" F6 1
GGZ "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GGZ
_pdbe_chem_comp_rdkit_properties.exactmw 488.976
_pdbe_chem_comp_rdkit_properties.amw 489.252
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 43
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 185.078
_pdbe_chem_comp_rdkit_properties.tpsa 244.740
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.682
_pdbe_chem_comp_rdkit_properties.CrippenMR 88.598
_pdbe_chem_comp_rdkit_properties.chi0v 16.043
_pdbe_chem_comp_rdkit_properties.chi1v 11.138
_pdbe_chem_comp_rdkit_properties.chi2v 5.644
_pdbe_chem_comp_rdkit_properties.chi3v 5.644
_pdbe_chem_comp_rdkit_properties.chi4v 4.127
_pdbe_chem_comp_rdkit_properties.chi0n 26.438
_pdbe_chem_comp_rdkit_properties.chi1n 13.003
_pdbe_chem_comp_rdkit_properties.chi2n 3.056
_pdbe_chem_comp_rdkit_properties.chi3n 3.056
_pdbe_chem_comp_rdkit_properties.chi4n 2.104
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.560
_pdbe_chem_comp_rdkit_properties.kappa1 10.843
_pdbe_chem_comp_rdkit_properties.kappa2 7.249
_pdbe_chem_comp_rdkit_properties.kappa3 4.252
_pdbe_chem_comp_rdkit_properties.Phi 2.620
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GGZ UniChem PDBe GGZ
GGZ UniChem ZINC ZINC000039322404
GGZ UniChem PubChem 12876354
GGZ UniChem BRENDA 115163
GGZ UniChem BRENDA 58916
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GGZ C2 -5.198 0.599 0.108 ETKDGv3 1
GGZ C4 -2.902 1.047 0.390 ETKDGv3 2
GGZ C5 -2.928 2.051 -0.444 ETKDGv3 3
GGZ C6 -4.190 2.416 -1.100 ETKDGv3 4
GGZ C8 -0.846 1.733 -0.009 ETKDGv3 5
GGZ N1 -5.255 1.714 -0.816 ETKDGv3 6
GGZ O3P -1.931 -4.993 -0.438 ETKDGv3 7
GGZ P1 -1.800 -3.734 0.684 ETKDGv3 8
GGZ "O2'" -2.162 -2.262 -0.036 ETKDGv3 9
GGZ O1P -2.705 -3.979 1.870 ETKDGv3 10
GGZ "O3'" -0.210 -3.550 1.188 ETKDGv3 11
GGZ "C3'" 0.208 -2.396 0.506 ETKDGv3 12
GGZ "C4'" 1.003 -1.482 1.449 ETKDGv3 13
GGZ "C5'" 2.313 -0.999 0.812 ETKDGv3 14
GGZ "O5'" 2.028 -0.254 -0.350 ETKDGv3 15
GGZ P2 3.498 0.285 -1.022 ETKDGv3 16
GGZ O4P 4.310 -0.909 -1.475 ETKDGv3 17
GGZ O5P 3.138 1.253 -2.363 ETKDGv3 18
GGZ O6P 4.356 1.190 0.141 ETKDGv3 19
GGZ S2 5.806 1.711 -0.561 ETKDGv3 20
GGZ OS3 6.657 0.534 -0.946 ETKDGv3 21
GGZ OS2 6.646 2.626 0.571 ETKDGv3 22
GGZ OS1 5.543 2.565 -1.771 ETKDGv3 23
GGZ "C2'" -0.970 -1.531 0.100 ETKDGv3 24
GGZ "C1'" -1.062 -0.524 1.240 ETKDGv3 25
GGZ "O4'" 0.219 -0.359 1.802 ETKDGv3 26
GGZ N9 -1.568 0.761 0.765 ETKDGv3 27
GGZ N7 -1.610 2.509 -0.723 ETKDGv3 28
GGZ N6 -4.260 3.499 -2.027 ETKDGv3 29
GGZ N3 -4.069 0.268 0.679 ETKDGv3 30
GGZ H2 -6.092 0.028 0.316 ETKDGv3 31
GGZ H8 0.233 1.804 -0.025 ETKDGv3 32
GGZ HO3P -1.552 -5.783 0.025 ETKDGv3 33
GGZ "H3'" 0.795 -2.703 -0.390 ETKDGv3 34
GGZ "H4'" 1.263 -2.033 2.379 ETKDGv3 35
GGZ "H5'1" 2.939 -1.889 0.573 ETKDGv3 36
GGZ "H5'2" 2.844 -0.371 1.563 ETKDGv3 37
GGZ HO5P 2.564 1.975 -2.003 ETKDGv3 38
GGZ HOS2 5.996 3.308 0.879 ETKDGv3 39
GGZ "H2'" -0.739 -1.018 -0.860 ETKDGv3 40
GGZ "H1'" -1.740 -0.908 2.035 ETKDGv3 41
GGZ HN61 -5.165 3.742 -2.487 ETKDGv3 42
GGZ HN62 -3.409 4.060 -2.255 ETKDGv3 43
#