data_GNM
#
_chem_comp.id GNM
_chem_comp.name "8-bromo-4-oxo-1,4-dihydroquinoline-3-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H6 Br N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-05-30
_chem_comp.pdbx_modified_date 2019-05-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 268.064
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GNM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6DJH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GNM C10 C1 C 0 1 Y N N N N N -7.571 -15.650 29.856 2.169 1.816 -0.009 C10 GNM 1
GNM C13 C2 C 0 1 Y N N N N N -7.687 -13.604 31.767 -0.540 1.252 0.004 C13 GNM 2
GNM C02 C3 C 0 1 N N N N N N -7.001 -11.734 35.040 -3.747 -0.921 -0.001 C02 GNM 3
GNM C04 C4 C 0 1 N N N N N N -7.023 -12.766 33.919 -2.337 -0.507 -0.001 C04 GNM 4
GNM C05 C5 C 0 1 N N N N N N -6.314 -13.949 34.094 -1.329 -1.449 -0.007 C05 GNM 5
GNM C07 C6 C 0 1 Y N N N N N -6.957 -14.737 32.020 0.394 0.202 -0.002 C07 GNM 6
GNM C08 C7 C 0 1 Y N N N N N -6.892 -15.766 31.063 1.755 0.502 -0.003 C08 GNM 7
GNM C11 C8 C 0 1 Y N N N N N -8.315 -14.501 29.594 1.245 2.851 -0.008 C11 GNM 8
GNM C12 C9 C 0 1 Y N N N N N -8.375 -13.481 30.542 -0.105 2.577 -0.002 C12 GNM 9
GNM C14 C10 C 0 1 N N N N N N -7.733 -12.576 32.731 -1.977 0.920 0.005 C14 GNM 10
GNM N06 N1 N 0 1 N N N N N N -6.282 -14.898 33.174 -0.034 -1.109 -0.007 N06 GNM 11
GNM O01 O1 O 0 1 N N N N N N -7.292 -10.538 34.812 -4.034 -2.103 -0.006 O01 GNM 12
GNM O03 O2 O 0 1 N N N N N N -6.682 -12.092 36.205 -4.723 0.009 0.005 O03 GNM 13
GNM O15 O3 O 0 1 N N N N N N -8.363 -11.586 32.524 -2.829 1.791 0.010 O15 GNM 14
GNM BR9 BR1 BR 0 0 N N N N N N -5.848 -17.350 31.475 3.031 -0.893 0.004 BR09 GNM 15
GNM H1 H1 H 0 1 N N N N N N -7.522 -16.445 29.126 3.225 2.044 -0.009 H1 GNM 16
GNM H4 H4 H 0 1 N N N N N N -8.844 -14.401 28.658 1.585 3.876 -0.013 H4 GNM 17
GNM H5 H5 H 0 1 N N N N N N -8.952 -12.591 30.337 -0.823 3.384 -0.002 H5 GNM 18
GNM H6 H6 H 0 1 N N N N N N -6.711 -11.341 36.787 -5.635 -0.312 0.005 H6 GNM 19
GNM H2 H2 H 0 1 N N N N N N -5.757 -15.734 33.335 0.632 -1.814 -0.012 H2 GNM 20
GNM H3 H3 H 0 1 N N N N N N -5.770 -14.098 35.015 -1.593 -2.497 -0.011 H3 GNM 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GNM C11 C10 SING Y N 1
GNM C11 C12 DOUB Y N 2
GNM C10 C08 DOUB Y N 3
GNM C12 C13 SING Y N 4
GNM C08 BR9 SING N N 5
GNM C08 C07 SING Y N 6
GNM C13 C07 DOUB Y N 7
GNM C13 C14 SING N N 8
GNM C07 N06 SING N N 9
GNM O15 C14 DOUB N N 10
GNM C14 C04 SING N N 11
GNM N06 C05 SING N N 12
GNM C04 C05 DOUB N N 13
GNM C04 C02 SING N N 14
GNM O01 C02 DOUB N N 15
GNM C02 O03 SING N N 16
GNM C10 H1 SING N N 17
GNM C11 H4 SING N N 18
GNM C12 H5 SING N N 19
GNM O03 H6 SING N N 20
GNM N06 H2 SING N N 21
GNM C05 H3 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GNM SMILES ACDLabs 12.01 c2c(c1c(C(C(C(O)=O)=CN1)=O)cc2)Br
GNM InChI InChI 1.03 InChI=1S/C10H6BrNO3/c11-7-3-1-2-5-8(7)12-4-6(9(5)13)10(14)15/h1-4H,(H,12,13)(H,14,15)
GNM InChIKey InChI 1.03 NKUGXZLINWIUOR-UHFFFAOYSA-N
GNM SMILES_CANONICAL CACTVS 3.385 OC(=O)C1=CNc2c(Br)cccc2C1=O
GNM SMILES CACTVS 3.385 OC(=O)C1=CNc2c(Br)cccc2C1=O
GNM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc2c(c(c1)Br)NC=C(C2=O)C(=O)O
GNM SMILES "OpenEye OEToolkits" 2.0.6 c1cc2c(c(c1)Br)NC=C(C2=O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GNM "SYSTEMATIC NAME" ACDLabs 12.01 "8-bromo-4-oxo-1,4-dihydroquinoline-3-carboxylic acid"
GNM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "8-bromanyl-4-oxidanylidene-1~{H}-quinoline-3-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GNM 'Create component' 2018-05-30 RCSB
GNM 'Initial release' 2019-05-29 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GNM C10 C 3.000 -0.755 1
GNM C13 C 5.700 0.776 2
GNM C02 C 9.597 1.526 3
GNM C04 C 8.298 0.776 4
GNM C05 C 8.298 -0.724 5
GNM C07 C 5.700 -0.724 6
GNM C08 C 4.359 -1.526 7
GNM C11 C 3.000 0.807 8
GNM C12 C 4.359 1.578 9
GNM C14 C 6.999 1.526 10
GNM N06 N 6.999 -1.474 11
GNM O01 O 10.896 0.776 12
GNM O03 O 9.597 3.026 13
GNM O15 O 6.999 3.026 14
GNM BR9 Br 4.376 -3.026 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GNM C11 C10 DOUBLE NONE 1
GNM C11 C12 SINGLE NONE 2
GNM C10 C08 SINGLE NONE 3
GNM C12 C13 DOUBLE NONE 4
GNM C08 BR9 SINGLE NONE 5
GNM C08 C07 DOUBLE NONE 6
GNM C13 C07 SINGLE NONE 7
GNM C13 C14 SINGLE NONE 8
GNM C07 N06 SINGLE NONE 9
GNM O15 C14 DOUBLE NONE 10
GNM C14 C04 SINGLE NONE 11
GNM N06 C05 SINGLE NONE 12
GNM C04 C05 DOUBLE NONE 13
GNM C04 C02 SINGLE NONE 14
GNM O01 C02 DOUBLE NONE 15
GNM C02 O03 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GNM MurckoScaffold S1 scaffold 'O=c1cc[nH]c2ccccc12' InChI=1S/C9H7NO/c11-9-5-6-10-8-4-2-1-3-7(8)9/h1-6H,(H,10,11) PMZDQRJGMBOQBF-UHFFFAOYSA-N
GNM phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GNM pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
GNM quinoline F3 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GNM C10 S1 1
GNM C13 S1 1
GNM C04 S1 1
GNM C05 S1 1
GNM C07 S1 1
GNM C08 S1 1
GNM C11 S1 1
GNM C12 S1 1
GNM C14 S1 1
GNM N06 S1 1
GNM O15 S1 1
GNM C10 F1 1
GNM C11 F1 1
GNM C12 F1 1
GNM C13 F1 1
GNM C07 F1 1
GNM C08 F1 1
GNM C05 F2 1
GNM C04 F2 1
GNM C14 F2 1
GNM C13 F2 1
GNM C07 F2 1
GNM N06 F2 1
GNM C11 F3 1
GNM C12 F3 1
GNM C13 F3 1
GNM C07 F3 1
GNM C08 F3 1
GNM C10 F3 1
GNM N06 F3 1
GNM C05 F3 1
GNM C04 F3 1
GNM C14 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GNM
_pdbe_chem_comp_rdkit_properties.exactmw 266.953
_pdbe_chem_comp_rdkit_properties.amw 268.066
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 101.257
_pdbe_chem_comp_rdkit_properties.tpsa 70.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.406
_pdbe_chem_comp_rdkit_properties.CrippenMR 56.864
_pdbe_chem_comp_rdkit_properties.chi0v 8.636
_pdbe_chem_comp_rdkit_properties.chi1v 4.542
_pdbe_chem_comp_rdkit_properties.chi2v 2.316
_pdbe_chem_comp_rdkit_properties.chi3v 2.316
_pdbe_chem_comp_rdkit_properties.chi4v 1.458
_pdbe_chem_comp_rdkit_properties.chi0n 13.050
_pdbe_chem_comp_rdkit_properties.chi1n 6.604
_pdbe_chem_comp_rdkit_properties.chi2n 1.742
_pdbe_chem_comp_rdkit_properties.chi3n 1.742
_pdbe_chem_comp_rdkit_properties.chi4n 1.072
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.620
_pdbe_chem_comp_rdkit_properties.kappa1 4.937
_pdbe_chem_comp_rdkit_properties.kappa2 3.507
_pdbe_chem_comp_rdkit_properties.kappa3 1.545
_pdbe_chem_comp_rdkit_properties.Phi 1.154
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GNM UniChem ChEMBL CHEMBL426699
GNM UniChem PDBe GNM
GNM UniChem ZINC ZINC000000151634
GNM UniChem eMolecules 3912087
GNM UniChem eMolecules 7648891
GNM UniChem 'PubChem TPHARMA' 17426633
GNM UniChem ACTor 35973-17-2
GNM UniChem 'EPA CompTox Dashboard' DTXSID30352761
GNM UniChem ChemicalBook CB3272680
GNM UniChem ChemicalBook CB6301208
GNM UniChem PubChem 735364
GNM UniChem Mcule MCULE-6660379419
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GNM C10 -3.052 0.437 -1.171 ETKDGv3 1
GNM C13 -0.739 -0.327 0.250 ETKDGv3 2
GNM C02 3.062 -0.496 1.246 ETKDGv3 3
GNM C04 1.806 -0.132 0.536 ETKDGv3 4
GNM C05 1.852 0.721 -0.507 ETKDGv3 5
GNM C07 -0.626 0.615 -0.889 ETKDGv3 6
GNM C08 -1.735 0.981 -1.569 ETKDGv3 7
GNM C11 -3.150 -0.412 -0.143 ETKDGv3 8
GNM C12 -1.942 -0.814 0.602 ETKDGv3 9
GNM C14 0.498 -0.700 0.967 ETKDGv3 10
GNM N06 0.677 1.112 -1.233 ETKDGv3 11
GNM O01 4.169 -0.014 0.879 ETKDGv3 12
GNM O03 3.039 -1.375 2.325 ETKDGv3 13
GNM O15 0.440 -1.499 1.941 ETKDGv3 14
GNM BR9 -1.691 2.193 -3.055 ETKDGv3 15
GNM H1 -3.942 0.728 -1.714 ETKDGv3 16
GNM H4 -4.116 -0.807 0.145 ETKDGv3 17
GNM H5 -2.048 -1.503 1.431 ETKDGv3 18
GNM H6 3.891 -1.627 2.811 ETKDGv3 19
GNM H2 0.807 1.777 -2.026 ETKDGv3 20
GNM H3 2.799 1.139 -0.827 ETKDGv3 21
#