data_GOS
#
_chem_comp.id GOS
_chem_comp.name D-Glucitol-1,6-bisphosphate
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H16 O12 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 1,6-di-O-phosphono-D-glucitol
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-04-20
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 342.132
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GOS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5VJE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GOS C1 C1 C 0 1 N N N N N N -6.806 -33.033 61.365 3.132 -0.367 0.088 C1 GOS 1
GOS C2 C2 C 0 1 N N S N N N -6.198 -34.396 61.634 1.862 0.268 -0.484 C2 GOS 2
GOS C3 C3 C 0 1 N N R N N N -4.676 -34.282 61.608 0.640 -0.524 -0.016 C3 GOS 3
GOS C4 C4 C 0 1 N N R N N N -4.139 -34.580 60.209 -0.635 0.181 -0.484 C4 GOS 4
GOS C5 C5 C 0 1 N N R N N N -3.075 -33.553 59.899 -1.856 -0.540 0.089 C5 GOS 5
GOS C6 C6 C 0 1 N N N N N N -2.293 -33.786 58.611 -3.131 0.165 -0.379 C6 GOS 6
GOS O1 O1 O 0 1 N N N N N N -8.136 -33.240 60.927 4.279 0.301 -0.442 O1 GOS 7
GOS O11 O2 O 0 1 N N N N N N -10.244 -32.540 59.794 6.036 0.181 1.510 O11 GOS 8
GOS O12 O3 O 0 1 N N N N N N -8.050 -31.448 59.212 5.996 -1.546 -0.331 O12 GOS 9
GOS O13 O4 O 0 1 N N N N N N -9.104 -30.963 61.404 6.820 0.762 -0.932 O13 GOS 10
GOS O2 O5 O 0 1 N N N N N N -6.728 -34.853 62.884 1.758 1.618 -0.028 O2 GOS 11
GOS O3 O6 O 0 1 N N N N N N -4.056 -35.203 62.498 0.643 -0.605 1.411 O3 GOS 12
GOS O4 O7 O 0 1 N N N N N N -3.616 -35.901 60.185 -0.624 1.536 -0.028 O4 GOS 13
GOS O5 O8 O 0 1 N N N N N N -3.802 -32.356 59.737 -1.866 -1.895 -0.367 O5 GOS 14
GOS O6 O9 O 0 1 N N N N N N -1.340 -32.731 58.464 -4.265 -0.437 0.248 O6 GOS 15
GOS O61 O10 O 0 1 N N N N N N -1.177 -32.297 55.947 -6.057 0.029 -1.467 O61 GOS 16
GOS O62 O11 O 0 1 N N N N N N 0.203 -34.098 57.022 -6.800 -0.925 0.749 O62 GOS 17
GOS O63 O12 O 0 1 N N N N N N 0.700 -31.688 57.475 -5.955 1.556 0.540 O63 GOS 18
GOS P1 P1 P 0 1 N N N N N N -8.925 -31.991 60.310 5.787 -0.107 -0.055 P1 GOS 19
GOS P6 P2 P 0 1 N N N N N N -0.374 -32.700 57.180 -5.776 0.055 -0.014 P6 GOS 20
GOS H12 H1 H 0 1 N N N N N N -6.231 -32.512 60.586 3.126 -0.274 1.174 H12 GOS 21
GOS H11 H2 H 0 1 N N N N N N -6.803 -32.432 62.286 3.166 -1.421 -0.186 H11 GOS 22
GOS H21 H3 H 0 1 N N N N N N -6.507 -35.080 60.830 1.909 0.255 -1.573 H21 GOS 23
GOS H31 H4 H 0 1 N N N N N N -4.397 -33.253 61.878 0.675 -1.529 -0.437 H31 GOS 24
GOS H41 H5 H 0 1 N N N N N N -4.959 -34.479 59.483 -0.680 0.165 -1.572 H41 GOS 25
GOS H51 H6 H 0 1 N N N N N N -2.375 -33.480 60.744 -1.810 -0.524 1.178 H51 GOS 26
GOS H61 H7 H 0 1 N N N N N N -2.982 -33.787 57.753 -3.083 1.219 -0.108 H61 GOS 27
GOS H62 H8 H 0 1 N N N N N N -1.771 -34.753 58.663 -3.221 0.071 -1.461 H62 GOS 28
GOS H1 H9 H 0 1 N N N N N N -10.281 -32.440 58.850 5.917 1.107 1.763 H1 GOS 29
GOS H2 H10 H 0 1 N N N N N N -8.625 -30.174 61.179 7.750 0.569 -0.750 H2 GOS 30
GOS H22 H11 H 0 1 N N N N N N -6.368 -35.708 63.087 1.713 1.706 0.933 H22 GOS 31
GOS H32 H12 H 0 1 N N N N N N -4.367 -35.048 63.382 0.613 0.254 1.854 H32 GOS 32
GOS H42 H13 H 0 1 N N N N N N -4.309 -36.520 60.383 -0.585 1.626 0.934 H42 GOS 33
GOS H52 H14 H 0 1 N N N N N N -4.303 -32.180 60.525 -1.906 -1.986 -1.329 H52 GOS 34
GOS H3 H15 H 0 1 N N N N N N -0.051 -34.452 56.178 -7.730 -0.688 0.635 H3 GOS 35
GOS H4 H16 H 0 1 N N N N N N 0.666 -30.992 56.830 -5.786 1.648 1.488 H4 GOS 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GOS O61 P6 DOUB N N 1
GOS O62 P6 SING N N 2
GOS P6 O63 SING N N 3
GOS P6 O6 SING N N 4
GOS O6 C6 SING N N 5
GOS C6 C5 SING N N 6
GOS O12 P1 DOUB N N 7
GOS O5 C5 SING N N 8
GOS O11 P1 SING N N 9
GOS C5 C4 SING N N 10
GOS O4 C4 SING N N 11
GOS C4 C3 SING N N 12
GOS P1 O1 SING N N 13
GOS P1 O13 SING N N 14
GOS O1 C1 SING N N 15
GOS C1 C2 SING N N 16
GOS C3 C2 SING N N 17
GOS C3 O3 SING N N 18
GOS C2 O2 SING N N 19
GOS C1 H12 SING N N 20
GOS C1 H11 SING N N 21
GOS C2 H21 SING N N 22
GOS C3 H31 SING N N 23
GOS C4 H41 SING N N 24
GOS C5 H51 SING N N 25
GOS C6 H61 SING N N 26
GOS C6 H62 SING N N 27
GOS O11 H1 SING N N 28
GOS O13 H2 SING N N 29
GOS O2 H22 SING N N 30
GOS O3 H32 SING N N 31
GOS O4 H42 SING N N 32
GOS O5 H52 SING N N 33
GOS O62 H3 SING N N 34
GOS O63 H4 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GOS SMILES ACDLabs 12.01 C(C(O)C(O)C(C(COP(=O)(O)O)O)O)OP(O)(=O)O
GOS InChI InChI 1.03 InChI=1S/C6H16O12P2/c7-3(1-17-19(11,12)13)5(9)6(10)4(8)2-18-20(14,15)16/h3-10H,1-2H2,(H2,11,12,13)(H2,14,15,16)/t3-,4+,5-,6-/m1/s1
GOS InChIKey InChI 1.03 WOYYTQHMNDWRCW-JGWLITMVSA-N
GOS SMILES_CANONICAL CACTVS 3.385 O[C@@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O
GOS SMILES CACTVS 3.385 O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O
GOS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C([C@H]([C@H]([C@@H]([C@H](COP(=O)(O)O)O)O)O)O)OP(=O)(O)O
GOS SMILES "OpenEye OEToolkits" 2.0.6 C(C(C(C(C(COP(=O)(O)O)O)O)O)O)OP(=O)(O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GOS "SYSTEMATIC NAME" ACDLabs 12.01 1,6-di-O-phosphono-D-glucitol
GOS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{S},3~{R},4~{R},5~{R})-2,3,4,5-tetrakis(oxidanyl)-6-phosphonooxy-hexyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GOS 'Create component' 2017-04-20 RCSB
GOS 'Initial release' 2018-04-11 RCSB
GOS 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id GOS
_pdbx_chem_comp_synonyms.name 1,6-di-O-phosphono-D-glucitol
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id GOS
_pdbe_chem_comp_synonyms.name 1,6-di-O-phosphono-D-glucitol
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GOS C1 C 7.702 -0.375 1
GOS C2 C 9.002 0.375 2
GOS C3 C 10.301 -0.375 3
GOS C4 C 11.600 0.375 4
GOS C5 C 12.899 -0.375 5
GOS C6 C 14.198 0.375 6
GOS O1 O 6.404 0.375 7
GOS O11 O 4.354 0.924 8
GOS O12 O 3.805 -1.125 9
GOS O13 O 5.854 -1.674 10
GOS O2 O 9.002 1.875 11
GOS O3 O 10.301 -1.875 12
GOS O4 O 11.600 1.875 13
GOS O5 O 12.899 -1.875 14
GOS O6 O 15.497 -0.375 15
GOS O61 O 18.095 1.125 16
GOS O62 O 17.546 -0.924 17
GOS O63 O 16.046 1.674 18
GOS P1 P 5.104 -0.375 19
GOS P6 P 16.796 0.375 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GOS O61 P6 DOUBLE NONE 1
GOS O62 P6 SINGLE NONE 2
GOS P6 O63 SINGLE NONE 3
GOS P6 O6 SINGLE NONE 4
GOS O6 C6 SINGLE NONE 5
GOS C6 C5 SINGLE NONE 6
GOS O12 P1 DOUBLE NONE 7
GOS C5 O5 SINGLE BEGINWEDGE 8
GOS O11 P1 SINGLE NONE 9
GOS C5 C4 SINGLE NONE 10
GOS C4 O4 SINGLE BEGINDASH 11
GOS C4 C3 SINGLE NONE 12
GOS P1 O1 SINGLE NONE 13
GOS P1 O13 SINGLE NONE 14
GOS O1 C1 SINGLE NONE 15
GOS C1 C2 SINGLE NONE 16
GOS C3 C2 SINGLE NONE 17
GOS C3 O3 SINGLE BEGINDASH 18
GOS C2 O2 SINGLE BEGINDASH 19
#
_pdbe_chem_comp_substructure.comp_id GOS
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GOS O1 F1 1
GOS P1 F1 1
GOS O12 F1 1
GOS O11 F1 1
GOS O13 F1 1
GOS O6 F1 2
GOS P6 F1 2
GOS O61 F1 2
GOS O62 F1 2
GOS O63 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id GOS
_pdbe_chem_comp_rdkit_properties.exactmw 342.012
_pdbe_chem_comp_rdkit_properties.amw 342.130
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.417
_pdbe_chem_comp_rdkit_properties.tpsa 214.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.351
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.019
_pdbe_chem_comp_rdkit_properties.chi0v 10.582
_pdbe_chem_comp_rdkit_properties.chi1v 6.857
_pdbe_chem_comp_rdkit_properties.chi2v 1.749
_pdbe_chem_comp_rdkit_properties.chi3v 1.749
_pdbe_chem_comp_rdkit_properties.chi4v 0.883
_pdbe_chem_comp_rdkit_properties.chi0n 24.793
_pdbe_chem_comp_rdkit_properties.chi1n 11.201
_pdbe_chem_comp_rdkit_properties.chi2n 1.119
_pdbe_chem_comp_rdkit_properties.chi3n 1.119
_pdbe_chem_comp_rdkit_properties.chi4n 0.494
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.060
_pdbe_chem_comp_rdkit_properties.kappa1 5.929
_pdbe_chem_comp_rdkit_properties.kappa2 7.896
_pdbe_chem_comp_rdkit_properties.kappa3 9.080
_pdbe_chem_comp_rdkit_properties.Phi 2.340
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GOS UniChem ChEMBL CHEMBL404748
GOS UniChem ZINC ZINC000013682453
GOS UniChem PubChem 44448097
GOS UniChem BRENDA 139240
GOS UniChem BRENDA 14461
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GOS C1 -2.492 0.266 0.261 ETKDGv3 1
GOS C2 -2.099 -0.964 -0.571 ETKDGv3 2
GOS C3 -0.819 -1.662 -0.029 ETKDGv3 3
GOS C4 0.452 -0.765 -0.068 ETKDGv3 4
GOS C5 1.700 -1.522 0.450 ETKDGv3 5
GOS C6 2.938 -0.609 0.505 ETKDGv3 6
GOS O1 -3.726 0.763 -0.205 ETKDGv3 7
GOS O11 -5.673 2.673 0.247 ETKDGv3 8
GOS O12 -3.134 3.235 0.507 ETKDGv3 9
GOS O13 -4.194 1.725 2.370 ETKDGv3 10
GOS O2 -3.168 -1.877 -0.545 ETKDGv3 11
GOS O3 -0.594 -2.865 -0.722 ETKDGv3 12
GOS O4 0.684 -0.325 -1.384 ETKDGv3 13
GOS O5 1.442 -2.015 1.740 ETKDGv3 14
GOS O6 3.345 -0.275 -0.802 ETKDGv3 15
GOS O61 5.848 0.066 -0.037 ETKDGv3 16
GOS O62 4.281 2.157 0.188 ETKDGv3 17
GOS O63 5.142 1.232 -2.263 ETKDGv3 18
GOS P1 -4.144 2.130 0.726 ETKDGv3 19
GOS P6 4.686 0.773 -0.700 ETKDGv3 20
GOS H12 -2.571 -0.039 1.329 ETKDGv3 21
GOS H11 -1.706 1.044 0.147 ETKDGv3 22
GOS H21 -1.923 -0.624 -1.619 ETKDGv3 23
GOS H31 -1.018 -1.929 1.033 ETKDGv3 24
GOS H41 0.298 0.104 0.614 ETKDGv3 25
GOS H51 1.918 -2.371 -0.241 ETKDGv3 26
GOS H61 3.752 -1.162 1.026 ETKDGv3 27
GOS H62 2.685 0.302 1.095 ETKDGv3 28
GOS H1 -5.596 2.814 -0.730 ETKDGv3 29
GOS H2 -4.504 2.549 2.824 ETKDGv3 30
GOS H22 -3.118 -2.410 -1.382 ETKDGv3 31
GOS H32 -0.455 -2.639 -1.679 ETKDGv3 32
GOS H42 0.264 0.570 -1.474 ETKDGv3 33
GOS H52 2.077 -2.762 1.898 ETKDGv3 34
GOS H3 5.082 2.737 0.131 ETKDGv3 35
GOS H4 4.340 1.676 -2.638 ETKDGv3 36
#