data_GQI
#
_chem_comp.id GQI
_chem_comp.name "(2R)-2-azanyl-3-[(E)-(2-oxidanyl-2-oxidanylidene-ethylidene)amino]oxysulfanyl-propanoic acid"
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C5 H8 N2 O5 S"
_chem_comp.mon_nstd_parent_comp_id CYS
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-05-17
_chem_comp.pdbx_modified_date 2023-05-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 208.192
_chem_comp.one_letter_code C
_chem_comp.three_letter_code GQI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7XQA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GQI C4 C1 C 0 1 N N N N N N -1.082 -30.531 99.086 4.250 -0.356 0.055 C4 GQI 1
GQI C C C 0 1 N N N N N N -1.915 -28.266 106.932 -3.842 -0.488 0.072 C GQI 2
GQI N N N 0 1 N N N N N N -2.116 -26.183 105.646 -1.580 -1.207 0.593 N GQI 3
GQI N2 N2 N 0 1 N N N N N N -2.405 -29.509 100.763 1.984 0.425 -0.055 N2 GQI 4
GQI C3 C3 C 0 1 N N N N N N -1.228 -29.698 100.340 2.822 -0.537 -0.268 C3 GQI 5
GQI CA CA C 0 1 N N R N N N -2.227 -27.665 105.554 -2.464 -0.039 0.487 CA GQI 6
GQI CB CB C 0 1 N N N N N N -1.287 -28.208 104.483 -1.907 0.929 -0.559 CB GQI 7
GQI S1 S1 S 0 1 N N N N N N -1.971 -29.470 103.370 -0.249 1.469 -0.060 S1 GQI 8
GQI O1 O1 O 0 1 N N N N N N -2.397 -28.759 101.940 0.613 0.252 -0.365 O1 GQI 9
GQI O2 O2 O 0 1 N N N N N N -2.133 -30.835 98.505 4.639 0.697 0.520 O2 GQI 10
GQI O3 O3 O 0 1 N N N N N N 0.067 -30.857 98.763 5.122 -1.360 -0.162 O3 GQI 11
GQI O4 O4 O 0 1 N N N N N N -1.307 -27.530 107.753 -3.993 -1.563 -0.458 O4 GQI 12
GQI HN2 HN2 H 0 1 N Y N N N N -2.738 -25.845 106.352 -1.891 -1.831 1.323 HN2 GQI 13
GQI H H H 0 1 N N N N N N -1.177 -25.933 105.882 -1.511 -1.690 -0.290 H GQI 14
GQI H6 H6 H 0 1 N N N N N N -0.370 -29.285 100.849 2.476 -1.472 -0.681 H6 GQI 15
GQI HA H8 H 0 1 N N N N N N -3.259 -27.932 105.283 -2.521 0.463 1.453 HA GQI 16
GQI H9 H9 H 0 1 N N N N N N -0.417 -28.648 104.993 -1.851 0.427 -1.525 H9 GQI 17
GQI H10 H10 H 0 1 N N N N N N -0.959 -27.359 103.865 -2.563 1.796 -0.638 H10 GQI 18
GQI H11 H11 H 0 1 N N N N N N 0.036 -31.393 97.979 6.047 -1.195 0.065 H11 GQI 19
GQI OXT OXT O 0 1 N Y N N N N ? ? ? -4.901 0.307 0.292 OXT GQI 20
GQI HXT HXT H 0 1 N Y N N N N ? ? ? -5.765 -0.024 0.009 HXT GQI 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GQI O2 C4 DOUB N N 1
GQI O3 C4 SING N N 2
GQI C4 C3 SING N N 3
GQI C3 N2 DOUB N E 4
GQI N2 O1 SING N N 5
GQI O1 S1 SING N N 6
GQI S1 CB SING N N 7
GQI CB CA SING N N 8
GQI CA N SING N N 9
GQI CA C SING N N 10
GQI C O4 DOUB N N 11
GQI N HN2 SING N N 12
GQI N H SING N N 13
GQI C3 H6 SING N N 14
GQI CA HA SING N N 15
GQI CB H9 SING N N 16
GQI CB H10 SING N N 17
GQI O3 H11 SING N N 18
GQI C OXT SING N N 19
GQI OXT HXT SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GQI InChI InChI 1.03 InChI=1S/C5H8N2O5S/c6-3(5(10)11)2-13-12-7-1-4(8)9/h1,3H,2,6H2,(H,8,9)(H,10,11)/b7-1+/t3-/m0/s1
GQI InChIKey InChI 1.03 UKPHWYCUZNYAML-COCXTYOSSA-N
GQI SMILES_CANONICAL CACTVS 3.385 N[C@@H](CSO/N=C/C(O)=O)C(O)=O
GQI SMILES CACTVS 3.385 N[CH](CSON=CC(O)=O)C(O)=O
GQI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C([C@@H](C(=O)O)N)SO/N=C/C(=O)O
GQI SMILES "OpenEye OEToolkits" 2.0.7 C(C(C(=O)O)N)SON=CC(=O)O
#
_pdbx_chem_comp_identifier.comp_id GQI
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{R})-2-azanyl-3-[(~{E})-(2-oxidanyl-2-oxidanylidene-ethylidene)amino]oxysulfanyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GQI 'Create component' 2022-05-17 PDBJ
GQI 'Initial release' 2023-05-31 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GQI C4 C 4.299 -3.518 1
GQI C C 9.495 3.982 2
GQI N N 6.897 3.982 3
GQI N2 N 5.598 -1.268 4
GQI C3 C 5.598 -2.768 5
GQI CA C 8.196 3.232 6
GQI CB C 8.196 1.732 7
GQI S1 S 6.897 0.983 8
GQI O1 O 6.897 -0.517 9
GQI O2 O 4.299 -5.018 10
GQI O3 O 3.000 -2.768 11
GQI O4 O 10.794 3.232 12
GQI OXT O 9.495 5.482 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GQI O2 C4 DOUBLE NONE 1
GQI O3 C4 SINGLE NONE 2
GQI C4 C3 SINGLE ENDUPRIGHT 3
GQI C3 N2 DOUBLE NONE 4
GQI N2 O1 SINGLE ENDUPRIGHT 5
GQI O1 S1 SINGLE NONE 6
GQI S1 CB SINGLE NONE 7
GQI CB CA SINGLE NONE 8
GQI CA N SINGLE BEGINDASH 9
GQI CA C SINGLE NONE 10
GQI C O4 DOUBLE NONE 11
GQI C OXT SINGLE NONE 12
#
_pdbe_chem_comp_substructure.comp_id GQI
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GQI O4 F1 1
GQI C F1 1
GQI CA F1 1
GQI N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GQI
_pdbe_chem_comp_rdkit_properties.exactmw 208.015
_pdbe_chem_comp_rdkit_properties.amw 208.195
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.275
_pdbe_chem_comp_rdkit_properties.tpsa 122.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.866
_pdbe_chem_comp_rdkit_properties.CrippenMR 45.282
_pdbe_chem_comp_rdkit_properties.chi0v 6.660
_pdbe_chem_comp_rdkit_properties.chi1v 3.309
_pdbe_chem_comp_rdkit_properties.chi2v 0.969
_pdbe_chem_comp_rdkit_properties.chi3v 0.969
_pdbe_chem_comp_rdkit_properties.chi4v 0.448
_pdbe_chem_comp_rdkit_properties.chi0n 13.844
_pdbe_chem_comp_rdkit_properties.chi1n 6.278
_pdbe_chem_comp_rdkit_properties.chi2n 0.543
_pdbe_chem_comp_rdkit_properties.chi3n 0.543
_pdbe_chem_comp_rdkit_properties.chi4n 0.174
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.280
_pdbe_chem_comp_rdkit_properties.kappa1 3.843
_pdbe_chem_comp_rdkit_properties.kappa2 6.260
_pdbe_chem_comp_rdkit_properties.kappa3 7.093
_pdbe_chem_comp_rdkit_properties.Phi 1.851
#
_pdbe_chem_comp_external_mappings.comp_id GQI
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id GQI
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GQI C4 3.776 -0.281 0.774 ETKDGv3 1
GQI C -2.504 -1.223 0.224 ETKDGv3 2
GQI N -2.988 0.882 -0.874 ETKDGv3 3
GQI N2 2.071 0.278 -0.818 ETKDGv3 4
GQI C3 2.596 0.479 0.353 ETKDGv3 5
GQI CA -1.913 -0.016 -0.445 ETKDGv3 6
GQI CB -0.923 0.684 0.506 ETKDGv3 7
GQI S1 -0.016 2.032 -0.331 ETKDGv3 8
GQI O1 0.954 0.941 -1.298 ETKDGv3 9
GQI O2 4.292 -1.138 0.007 ETKDGv3 10
GQI O3 4.328 -0.051 2.030 ETKDGv3 11
GQI O4 -3.298 -1.089 1.194 ETKDGv3 12
GQI HN2 -2.590 1.614 -1.505 ETKDGv3 13
GQI H -3.395 1.370 -0.042 ETKDGv3 14
GQI H6 2.181 1.207 1.035 ETKDGv3 15
GQI HA -1.360 -0.364 -1.346 ETKDGv3 16
GQI H9 -1.466 1.114 1.375 ETKDGv3 17
GQI H10 -0.190 -0.053 0.900 ETKDGv3 18
GQI H11 5.143 -0.566 2.341 ETKDGv3 19
GQI OXT -2.157 -2.497 -0.215 ETKDGv3 20
GQI HXT -2.540 -3.323 0.230 ETKDGv3 21
#