data_GSI
#
_chem_comp.id GSI
_chem_comp.name
2-(5-chlorothiophen-2-yl)-N-[(3S)-1-(4-{2-[(dimethylamino)methyl]-1H-imidazol-1-yl}-2-fluorophenyl)-2-oxopyrrolidin-3-yl]ethanesulfonamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C22 H25 Cl F N5 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-11-16
_chem_comp.pdbx_modified_date 2019-01-15
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 526.047
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GSI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VH0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GSI CL1 CL1 CL 0 0 N N N N N N 13.822 7.275 26.215 13.822 7.275 26.215 CL1 GSI 1
GSI C1 C1 C 0 1 Y N N N N N 12.099 7.504 26.229 12.099 7.504 26.229 C1 GSI 2
GSI C2 C2 C 0 1 Y N N N N N 11.250 7.032 27.294 11.250 7.032 27.294 C2 GSI 3
GSI C3 C3 C 0 1 Y N N N N N 9.887 7.357 26.987 9.887 7.357 26.987 C3 GSI 4
GSI S2 S2 S 0 1 Y N N N N N 11.277 8.277 24.955 11.277 8.277 24.955 S2 GSI 5
GSI C4 C4 C 0 1 Y N N N N N 9.759 8.039 25.729 9.759 8.039 25.729 C4 GSI 6
GSI C5 C5 C 0 1 N N N N N N 8.456 8.451 25.212 8.456 8.451 25.212 C5 GSI 7
GSI C6 C6 C 0 1 N N N N N N 8.234 8.908 23.962 8.234 8.908 23.962 C6 GSI 8
GSI S1 S1 S 0 1 N N N N N N 6.570 9.320 23.664 6.570 9.320 23.664 S1 GSI 9
GSI O2 O2 O 0 1 N N N N N N 6.574 10.581 23.002 6.574 10.581 23.002 O2 GSI 10
GSI O1 O1 O 0 1 N N N N N N 5.852 9.025 24.849 5.852 9.025 24.849 O1 GSI 11
GSI N1 N1 N 0 1 N N N N N N 6.010 8.386 22.476 6.010 8.386 22.476 N1 GSI 12
GSI C12 C12 C 0 1 N N S N N N 5.927 6.952 22.602 5.927 6.952 22.602 C12 GSI 13
GSI C13 C13 C 0 1 N N N N N N 4.583 6.459 22.064 4.583 6.459 22.064 C13 GSI 14
GSI C14 C14 C 0 1 N N N N N N 4.973 5.114 21.443 4.973 5.114 21.443 C14 GSI 15
GSI C50 C50 C 0 1 N N N N N N 6.965 6.258 21.738 6.965 6.258 21.738 C50 GSI 16
GSI O3 O3 O 0 1 N N N N N N 8.133 6.598 21.595 8.133 6.598 21.595 O3 GSI 17
GSI N2 N2 N 0 1 N N N N N N 6.393 5.208 21.139 6.393 5.208 21.139 N2 GSI 18
GSI C15 C15 C 0 1 Y N N N N N 7.057 4.315 20.345 7.057 4.315 20.345 C15 GSI 19
GSI C21 C21 C 0 1 Y N N N N N 6.965 2.929 20.635 6.965 2.929 20.635 C21 GSI 20
GSI C24 C24 C 0 1 Y N N N N N 7.661 2.026 19.805 7.661 2.026 19.805 C24 GSI 21
GSI C27 C27 C 0 1 Y N N N N N 8.411 2.481 18.705 8.411 2.481 18.705 C27 GSI 22
GSI C26 C26 C 0 1 Y N N N N N 8.505 3.865 18.423 8.505 3.865 18.423 C26 GSI 23
GSI C22 C22 C 0 1 Y N N N N N 7.825 4.756 19.261 7.825 4.756 19.261 C22 GSI 24
GSI F1 F1 F 0 1 N N N N N N 7.887 6.078 19.015 7.887 6.078 19.015 F1 GSI 25
GSI N4 N4 N 0 1 Y N N N N N 9.100 1.592 17.868 9.100 1.592 17.868 N4 GSI 26
GSI C9 C9 C 0 1 Y N N N N N 10.205 0.897 18.284 10.205 0.897 18.284 C9 GSI 27
GSI C7 C7 C 0 1 Y N N N N N 10.652 0.120 17.188 10.652 0.120 17.188 C7 GSI 28
GSI N3 N3 N 0 1 Y N N N N N 9.791 0.376 16.167 9.791 0.376 16.167 N3 GSI 29
GSI C8 C8 C 0 1 Y N N N N N 8.854 1.263 16.575 8.854 1.263 16.575 C8 GSI 30
GSI C10 C10 C 0 1 N N N N N N 7.737 1.794 15.687 7.737 1.794 15.687 C10 GSI 31
GSI N5 N5 N 0 1 N N N N N N 7.111 0.745 14.851 7.111 0.745 14.851 N5 GSI 32
GSI C11 C11 C 0 1 N N N N N N 6.414 -0.254 15.679 6.414 -0.254 15.679 C11 GSI 33
GSI C16 C16 C 0 1 N N N N N N 6.170 1.371 13.911 6.170 1.371 13.911 C16 GSI 34
GSI H2 H2 H 0 1 N N N N N N 11.586 6.516 28.181 11.586 6.516 28.181 H2 GSI 35
GSI H3 H3 H 0 1 N N N N N N 9.052 7.116 27.628 9.052 7.116 27.628 H3 GSI 36
GSI H5C1 1H5C H 0 0 N N N N N N 7.826 7.553 25.296 7.826 7.553 25.296 H5C1 GSI 37
GSI H5C2 2H5C H 0 0 N N N N N N 8.271 9.359 25.805 8.271 9.359 25.805 H5C2 GSI 38
GSI H6C1 1H6C H 0 0 N N N N N N 8.844 9.811 23.813 8.844 9.811 23.813 H6C1 GSI 39
GSI H6C2 2H6C H 0 0 N N N N N N 8.501 8.100 23.265 8.501 8.100 23.265 H6C2 GSI 40
GSI H1 H1 H 0 1 N N N N N N 5.072 8.694 22.314 5.072 8.694 22.315 H1 GSI 41
GSI H12 H12 H 0 1 N N N N N N 6.073 6.725 23.668 6.073 6.725 23.668 H12 GSI 42
GSI H131 1H13 H 0 0 N N N N N N 3.833 6.346 22.861 3.833 6.346 22.861 H131 GSI 43
GSI H132 2H13 H 0 0 N N N N N N 4.106 7.153 21.356 4.107 7.153 21.356 H132 GSI 44
GSI H141 1H14 H 0 0 N N N N N N 4.781 4.292 22.148 4.781 4.292 22.148 H141 GSI 45
GSI H142 2H14 H 0 0 N N N N N N 4.383 4.904 20.539 4.383 4.904 20.539 H142 GSI 46
GSI H21 H21 H 0 1 N N N N N N 6.378 2.575 21.469 6.378 2.575 21.469 H21 GSI 47
GSI H24 H24 H 0 1 N N N N N N 7.618 0.968 20.017 7.618 0.968 20.017 H24 GSI 48
GSI H26 H26 H 0 1 N N N N N N 9.085 4.223 17.585 9.085 4.223 17.585 H26 GSI 49
GSI H9 H9 H 0 1 N N N N N N 10.652 0.935 19.266 10.652 0.935 19.266 H9 GSI 50
GSI H7 H7 H 0 1 N N N N N N 11.505 -0.542 17.167 11.505 -0.542 17.167 H7 GSI 51
GSI H101 1H10 H 0 0 N N N N N N 6.960 2.230 16.333 6.960 2.230 16.333 H101 GSI 52
GSI H102 2H10 H 0 0 N N N N N N 8.181 2.536 15.007 8.181 2.536 15.007 H102 GSI 53
GSI H111 1H11 H 0 0 N N N N N N 6.240 -1.165 15.087 6.240 -1.165 15.087 H111 GSI 54
GSI H112 2H11 H 0 0 N N N N N N 7.032 -0.499 16.556 7.032 -0.499 16.556 H112 GSI 55
GSI H113 3H11 H 0 0 N N N N N N 5.449 0.156 16.013 5.449 0.156 16.013 H113 GSI 56
GSI H161 1H16 H 0 0 N N N N N N 5.202 1.527 14.410 5.202 1.527 14.410 H161 GSI 57
GSI H162 2H16 H 0 0 N N N N N N 6.572 2.340 13.580 6.573 2.340 13.580 H162 GSI 58
GSI H163 3H16 H 0 0 N N N N N N 6.031 0.714 13.040 6.031 0.714 13.040 H163 GSI 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GSI CL1 C1 SING N N 1
GSI C1 C2 DOUB Y N 2
GSI C1 S2 SING Y N 3
GSI C2 C3 SING Y N 4
GSI C3 C4 DOUB Y N 5
GSI S2 C4 SING Y N 6
GSI C4 C5 SING N N 7
GSI C5 C6 SING N N 8
GSI C6 S1 SING N N 9
GSI S1 O2 DOUB N N 10
GSI S1 O1 DOUB N N 11
GSI S1 N1 SING N N 12
GSI N1 C12 SING N N 13
GSI C12 C13 SING N N 14
GSI C12 C50 SING N N 15
GSI C13 C14 SING N N 16
GSI C14 N2 SING N N 17
GSI C50 O3 DOUB N N 18
GSI C50 N2 SING N N 19
GSI N2 C15 SING N N 20
GSI C15 C21 SING Y N 21
GSI C15 C22 DOUB Y N 22
GSI C21 C24 DOUB Y N 23
GSI C24 C27 SING Y N 24
GSI C27 C26 DOUB Y N 25
GSI C27 N4 SING Y N 26
GSI C26 C22 SING Y N 27
GSI C22 F1 SING N N 28
GSI N4 C9 SING Y N 29
GSI N4 C8 SING Y N 30
GSI C9 C7 DOUB Y N 31
GSI C7 N3 SING Y N 32
GSI N3 C8 DOUB Y N 33
GSI C8 C10 SING N N 34
GSI C10 N5 SING N N 35
GSI N5 C11 SING N N 36
GSI N5 C16 SING N N 37
GSI C2 H2 SING N N 38
GSI C3 H3 SING N N 39
GSI C5 H5C1 SING N N 40
GSI C5 H5C2 SING N N 41
GSI C6 H6C1 SING N N 42
GSI C6 H6C2 SING N N 43
GSI N1 H1 SING N N 44
GSI C12 H12 SING N N 45
GSI C13 H131 SING N N 46
GSI C13 H132 SING N N 47
GSI C14 H141 SING N N 48
GSI C14 H142 SING N N 49
GSI C21 H21 SING N N 50
GSI C24 H24 SING N N 51
GSI C26 H26 SING N N 52
GSI C9 H9 SING N N 53
GSI C7 H7 SING N N 54
GSI C10 H101 SING N N 55
GSI C10 H102 SING N N 56
GSI C11 H111 SING N N 57
GSI C11 H112 SING N N 58
GSI C11 H113 SING N N 59
GSI C16 H161 SING N N 60
GSI C16 H162 SING N N 61
GSI C16 H163 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GSI SMILES ACDLabs 10.04 Clc1sc(cc1)CCS(=O)(=O)NC4C(=O)N(c3ccc(n2ccnc2CN(C)C)cc3F)CC4
GSI SMILES_CANONICAL CACTVS 3.341 CN(C)Cc1nccn1c2ccc(N3CC[C@H](N[S](=O)(=O)CCc4sc(Cl)cc4)C3=O)c(F)c2
GSI SMILES CACTVS 3.341 CN(C)Cc1nccn1c2ccc(N3CC[CH](N[S](=O)(=O)CCc4sc(Cl)cc4)C3=O)c(F)c2
GSI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CN(C)Cc1nccn1c2ccc(c(c2)F)N3CC[C@@H](C3=O)NS(=O)(=O)CCc4ccc(s4)Cl
GSI SMILES "OpenEye OEToolkits" 1.5.0 CN(C)Cc1nccn1c2ccc(c(c2)F)N3CCC(C3=O)NS(=O)(=O)CCc4ccc(s4)Cl
GSI InChI InChI 1.03 InChI=1S/C22H25ClFN5O3S2/c1-27(2)14-21-25-9-11-28(21)15-3-5-19(17(24)13-15)29-10-7-18(22(29)30)26-34(31,32)12-8-16-4-6-20(23)33-16/h3-6,9,11,13,18,26H,7-8,10,12,14H2,1-2H3/t18-/m0/s1
GSI InChIKey InChI 1.03 JENHCPNBBPPGMN-SFHVURJKSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GSI "SYSTEMATIC NAME" ACDLabs 10.04 2-(5-chlorothiophen-2-yl)-N-[(3S)-1-(4-{2-[(dimethylamino)methyl]-1H-imidazol-1-yl}-2-fluorophenyl)-2-oxopyrrolidin-3-yl]ethanesulfonamide
GSI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-(5-chlorothiophen-2-yl)-N-[(3S)-1-[4-[2-(dimethylaminomethyl)imidazol-1-yl]-2-fluoro-phenyl]-2-oxo-pyrrolidin-3-yl]ethanesulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GSI 'Create component' 2007-11-16 EBI
GSI 'Modify aromatic_flag' 2011-06-04 RCSB
GSI 'Modify descriptor' 2011-06-04 RCSB
GSI 'Modify formula' 2019-01-15 EBI
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GSI CL1 Cl 8.923 10.808 1
GSI C1 C 8.611 9.341 2
GSI C2 C 7.240 8.731 3
GSI C3 C 7.397 7.239 4
GSI S2 S 9.614 8.226 5
GSI C4 C 8.864 6.927 6
GSI C5 C 9.475 5.557 7
GSI C6 C 8.593 4.343 8
GSI S1 S 9.203 2.973 9
GSI O2 O 10.573 3.583 10
GSI O1 O 7.833 2.363 11
GSI N1 N 9.813 1.603 12
GSI C12 C 8.931 0.389 13
GSI C13 C 7.431 0.389 14
GSI C14 C 6.968 -1.037 15
GSI C50 C 9.395 -1.037 16
GSI O3 O 10.822 -1.501 17
GSI N2 N 8.181 -1.919 18
GSI C15 C 8.181 -3.419 19
GSI C21 C 9.480 -4.169 20
GSI C24 C 9.480 -5.669 21
GSI C27 C 8.181 -6.419 22
GSI C26 C 6.883 -5.669 23
GSI C22 C 6.883 -4.169 24
GSI F1 F 5.583 -3.419 25
GSI N4 N 8.181 -7.919 26
GSI C9 C 9.395 -8.801 27
GSI C7 C 8.931 -10.227 28
GSI N3 N 7.431 -10.227 29
GSI C8 C 6.968 -8.801 30
GSI C10 C 5.541 -8.337 31
GSI N5 N 4.427 -9.341 32
GSI C11 C 3.000 -8.877 33
GSI C16 C 4.739 -10.808 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GSI CL1 C1 SINGLE NONE 1
GSI C1 C2 DOUBLE NONE 2
GSI C1 S2 SINGLE NONE 3
GSI C2 C3 SINGLE NONE 4
GSI C3 C4 DOUBLE NONE 5
GSI S2 C4 SINGLE NONE 6
GSI C4 C5 SINGLE NONE 7
GSI C5 C6 SINGLE NONE 8
GSI C6 S1 SINGLE NONE 9
GSI S1 O2 DOUBLE NONE 10
GSI S1 O1 DOUBLE NONE 11
GSI S1 N1 SINGLE NONE 12
GSI C12 N1 SINGLE BEGINDASH 13
GSI C12 C13 SINGLE NONE 14
GSI C12 C50 SINGLE NONE 15
GSI C13 C14 SINGLE NONE 16
GSI C14 N2 SINGLE NONE 17
GSI C50 O3 DOUBLE NONE 18
GSI C50 N2 SINGLE NONE 19
GSI N2 C15 SINGLE NONE 20
GSI C15 C21 DOUBLE NONE 21
GSI C15 C22 SINGLE NONE 22
GSI C21 C24 SINGLE NONE 23
GSI C24 C27 DOUBLE NONE 24
GSI C27 C26 SINGLE NONE 25
GSI C27 N4 SINGLE NONE 26
GSI C26 C22 DOUBLE NONE 27
GSI C22 F1 SINGLE NONE 28
GSI N4 C9 SINGLE NONE 29
GSI N4 C8 SINGLE NONE 30
GSI C9 C7 DOUBLE NONE 31
GSI C7 N3 SINGLE NONE 32
GSI N3 C8 DOUBLE NONE 33
GSI C8 C10 SINGLE NONE 34
GSI C10 N5 SINGLE NONE 35
GSI N5 C11 SINGLE NONE 36
GSI N5 C16 SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GSI MurckoScaffold S1 scaffold 'O=C1[C@@H](NS(=O)(=O)CCc2cccs2)CCN1c1ccc(-n2ccnc2)cc1' InChI=1S/C19H20N4O3S2/c24-19-18(21-28(25,26)13-8-17-2-1-12-27-17)7-10-23(19)16-5-3-15(4-6-16)22-11-9-20-14-22/h1-6,9,11-12,14,18,21H,7-8,10,13H2/t18-/m0/s1 GJBOJGMWRULDQV-SFHVURJKSA-N
GSI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
GSI imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
GSI peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
GSI phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GSI thiophen F5 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
GSI Z431570984 F6 fragment CNCCNS(C)(=O)=O.Cl 'InChI=1S/C4H12N2O2S.ClH/c1-5-3-4-6-9(2,7)8;/h5-6H,3-4H2,1-2H3;1H' KOWKLRCTVDADQT-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GSI C1 S1 1
GSI C2 S1 1
GSI C3 S1 1
GSI S2 S1 1
GSI C4 S1 1
GSI C5 S1 1
GSI C6 S1 1
GSI S1 S1 1
GSI O2 S1 1
GSI O1 S1 1
GSI N1 S1 1
GSI C12 S1 1
GSI C13 S1 1
GSI C14 S1 1
GSI C50 S1 1
GSI O3 S1 1
GSI N2 S1 1
GSI C15 S1 1
GSI C21 S1 1
GSI C24 S1 1
GSI C27 S1 1
GSI C26 S1 1
GSI C22 S1 1
GSI N4 S1 1
GSI C9 S1 1
GSI C7 S1 1
GSI N3 S1 1
GSI C8 S1 1
GSI N2 F1 1
GSI C50 F1 1
GSI O3 F1 1
GSI C12 F1 1
GSI C9 F2 1
GSI C7 F2 1
GSI N3 F2 1
GSI C8 F2 1
GSI N4 F2 1
GSI O3 F3 1
GSI C50 F3 1
GSI C12 F3 1
GSI N1 F3 1
GSI C15 F4 1
GSI C21 F4 1
GSI C24 F4 1
GSI C27 F4 1
GSI C26 F4 1
GSI C22 F4 1
GSI C1 F5 1
GSI C2 F5 1
GSI C3 F5 1
GSI C4 F5 1
GSI S2 F5 1
GSI CL1 F6 1
GSI C14 F6 1
GSI N2 F6 1
GSI C50 F6 1
GSI C12 F6 1
GSI N1 F6 1
GSI S1 F6 1
GSI O2 F6 1
GSI O1 F6 1
GSI C6 F6 1
GSI CL1 F6 2
GSI C15 F6 2
GSI N2 F6 2
GSI C50 F6 2
GSI C12 F6 2
GSI N1 F6 2
GSI S1 F6 2
GSI O2 F6 2
GSI O1 F6 2
GSI C6 F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id GSI
_pdbe_chem_comp_rdkit_properties.exactmw 525.107
_pdbe_chem_comp_rdkit_properties.amw 526.059
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.364
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 241.746
_pdbe_chem_comp_rdkit_properties.tpsa 87.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.375
_pdbe_chem_comp_rdkit_properties.CrippenMR 129.609
_pdbe_chem_comp_rdkit_properties.chi0v 18.422
_pdbe_chem_comp_rdkit_properties.chi1v 11.028
_pdbe_chem_comp_rdkit_properties.chi2v 5.391
_pdbe_chem_comp_rdkit_properties.chi3v 5.391
_pdbe_chem_comp_rdkit_properties.chi4v 3.766
_pdbe_chem_comp_rdkit_properties.chi0n 41.033
_pdbe_chem_comp_rdkit_properties.chi1n 20.841
_pdbe_chem_comp_rdkit_properties.chi2n 3.593
_pdbe_chem_comp_rdkit_properties.chi3n 3.593
_pdbe_chem_comp_rdkit_properties.chi4n 2.297
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.310
_pdbe_chem_comp_rdkit_properties.kappa1 8.377
_pdbe_chem_comp_rdkit_properties.kappa2 10.125
_pdbe_chem_comp_rdkit_properties.kappa3 5.663
_pdbe_chem_comp_rdkit_properties.Phi 2.495
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GSI UniChem PDBe GSI
GSI UniChem ZINC ZINC000029130721
GSI UniChem SureChEMBL SCHEMBL6360675
GSI UniChem PubChem 25058127
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GSI CL1 10.871 -1.133 1.739 ETKDGv3 1
GSI C1 9.768 -0.860 0.407 ETKDGv3 2
GSI C2 9.608 -1.681 -0.627 ETKDGv3 3
GSI C3 8.605 -1.215 -1.609 ETKDGv3 4
GSI S2 8.698 0.551 0.250 ETKDGv3 5
GSI C4 8.048 -0.044 -1.297 ETKDGv3 6
GSI C5 6.955 0.622 -2.073 ETKDGv3 7
GSI C6 5.587 0.125 -1.603 ETKDGv3 8
GSI S1 4.272 0.937 -2.502 ETKDGv3 9
GSI O2 4.302 2.413 -2.215 ETKDGv3 10
GSI O1 4.479 0.724 -3.975 ETKDGv3 11
GSI N1 2.730 0.261 -2.055 ETKDGv3 12
GSI C12 2.341 0.687 -0.702 ETKDGv3 13
GSI C13 1.715 2.098 -0.714 ETKDGv3 14
GSI C14 0.374 2.012 0.037 ETKDGv3 15
GSI C50 1.235 -0.154 -0.181 ETKDGv3 16
GSI O3 1.334 -1.396 0.010 ETKDGv3 17
GSI N2 0.090 0.594 0.185 ETKDGv3 18
GSI C15 -1.152 0.050 0.666 ETKDGv3 19
GSI C21 -1.797 0.631 1.693 ETKDGv3 20
GSI C24 -3.068 0.071 2.195 ETKDGv3 21
GSI C27 -3.609 -1.008 1.611 ETKDGv3 22
GSI C26 -2.909 -1.649 0.474 ETKDGv3 23
GSI C22 -1.754 -1.147 0.019 ETKDGv3 24
GSI F1 -1.171 -1.709 -1.068 ETKDGv3 25
GSI N4 -4.841 -1.558 2.097 ETKDGv3 26
GSI C9 -5.128 -2.939 2.259 ETKDGv3 27
GSI C7 -6.435 -3.090 2.380 ETKDGv3 28
GSI N3 -7.090 -1.829 2.256 ETKDGv3 29
GSI C8 -6.141 -0.962 2.091 ETKDGv3 30
GSI C10 -6.430 0.481 1.785 ETKDGv3 31
GSI N5 -6.990 0.627 0.426 ETKDGv3 32
GSI C11 -7.567 1.971 0.265 ETKDGv3 33
GSI C16 -5.951 0.413 -0.597 ETKDGv3 34
GSI H2 10.155 -2.608 -0.735 ETKDGv3 35
GSI H3 8.338 -1.781 -2.492 ETKDGv3 36
GSI H5C1 7.026 1.721 -1.922 ETKDGv3 37
GSI H5C2 7.084 0.412 -3.157 ETKDGv3 38
GSI H6C1 5.469 0.332 -0.519 ETKDGv3 39
GSI H6C2 5.507 -0.971 -1.767 ETKDGv3 40
GSI H1 2.864 -0.777 -2.060 ETKDGv3 41
GSI H12 3.192 0.635 0.012 ETKDGv3 42
GSI H131 1.525 2.436 -1.757 ETKDGv3 43
GSI H132 2.391 2.831 -0.222 ETKDGv3 44
GSI H141 0.472 2.482 1.039 ETKDGv3 45
GSI H142 -0.437 2.510 -0.537 ETKDGv3 46
GSI H21 -1.384 1.501 2.186 ETKDGv3 47
GSI H24 -3.546 0.531 3.050 ETKDGv3 48
GSI H26 -3.350 -2.509 -0.013 ETKDGv3 49
GSI H9 -4.393 -3.733 2.271 ETKDGv3 50
GSI H7 -6.946 -4.034 2.511 ETKDGv3 51
GSI H101 -5.526 1.112 1.912 ETKDGv3 52
GSI H102 -7.169 0.828 2.542 ETKDGv3 53
GSI H111 -8.393 2.123 0.994 ETKDGv3 54
GSI H112 -6.798 2.761 0.417 ETKDGv3 55
GSI H113 -8.007 2.082 -0.749 ETKDGv3 56
GSI H161 -5.587 -0.634 -0.561 ETKDGv3 57
GSI H162 -5.091 1.106 -0.455 ETKDGv3 58
GSI H163 -6.373 0.567 -1.614 ETKDGv3 59
#