data_GSP
#
_chem_comp.id GSP
_chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 N5 O13 P3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 539.246
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GSP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1GIA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GSP PG PG P 0 1 N N N N N N 37.221 -32.274 12.474 -1.026 -0.484 6.915 PG GSP 1
GSP O3B O3B O 0 1 N N N N N N 37.514 -31.584 10.994 -1.015 -1.198 5.472 O3B GSP 2
GSP S1G S1G S 0 1 N N N N N N 38.939 -32.825 13.146 -1.772 1.216 6.761 S1G GSP 3
GSP O2G O2G O 0 1 N N N N N N 36.396 -31.275 13.244 -1.900 -1.363 7.942 O2G GSP 4
GSP O3G O3G O 0 1 N N N N N N 36.476 -33.475 12.007 0.482 -0.360 7.463 O3G GSP 5
GSP PB PB P 0 1 N N S N N N 36.539 -30.736 10.068 -0.128 -0.270 4.500 PB GSP 6
GSP O1B O1B O 0 1 N N N N N N 36.062 -31.672 9.055 -0.735 1.076 4.415 O1B GSP 7
GSP O2B O2B O 0 1 N N N N N N 35.474 -29.962 10.831 1.365 -0.150 5.089 O2B GSP 8
GSP PA PA P 0 1 N N S N N N 37.707 -28.074 9.474 0.823 0.046 2.117 PA GSP 9
GSP O1A O1A O 0 1 N N N N N N 36.469 -27.480 8.953 0.201 1.388 2.069 O1A GSP 10
GSP O2A O2A O 0 1 N N N N N N 38.124 -27.746 10.879 2.300 0.161 2.746 O2A GSP 11
GSP O3A O3A O 0 1 N N N N N N 37.499 -29.683 9.305 -0.074 -0.928 3.031 O3A GSP 12
GSP "O5'" O5* O 0 1 N N N N N N 38.916 -27.799 8.441 0.919 -0.554 0.627 "O5'" GSP 13
GSP "C5'" C5* C 0 1 N N N N N N 40.290 -27.982 8.746 1.724 0.350 -0.131 "C5'" GSP 14
GSP "C4'" C4* C 0 1 N N R N N N 41.124 -26.932 8.112 1.857 -0.164 -1.566 "C4'" GSP 15
GSP "O4'" O4* O 0 1 N N N N N N 40.934 -26.927 6.670 0.559 -0.236 -2.196 "O4'" GSP 16
GSP "C3'" C3* C 0 1 N N S N N N 40.695 -25.538 8.607 2.659 0.836 -2.427 "C3'" GSP 17
GSP "O3'" O3* O 0 1 N N N N N N 41.853 -24.747 8.895 4.023 0.424 -2.534 "O3'" GSP 18
GSP "C2'" C2* C 0 1 N N R N N N 39.943 -24.929 7.393 1.965 0.783 -3.809 "C2'" GSP 19
GSP "O2'" O2* O 0 1 N N N N N N 40.086 -23.530 7.331 2.881 0.339 -4.812 "O2'" GSP 20
GSP "C1'" C1* C 0 1 N N R N N N 40.647 -25.588 6.205 0.825 -0.240 -3.615 "C1'" GSP 21
GSP N9 N9 N 0 1 Y N N N N N 39.749 -25.681 5.036 -0.366 0.176 -4.358 N9 GSP 22
GSP C8 C8 C 0 1 Y N N N N N 38.509 -26.289 4.920 -1.361 0.989 -3.898 C8 GSP 23
GSP N7 N7 N 0 1 Y N N N N N 37.992 -26.231 3.746 -2.263 1.148 -4.822 N7 GSP 24
GSP C5 C5 C 0 1 Y N N N N N 39.028 -25.685 2.977 -1.902 0.451 -5.926 C5 GSP 25
GSP C6 C6 C 0 1 N N N N N N 39.130 -25.486 1.542 -2.480 0.259 -7.203 C6 GSP 26
GSP O6 O6 O 0 1 N N N N N N 38.359 -25.823 0.637 -3.539 0.788 -7.495 O6 GSP 27
GSP N1 N1 N 0 1 N N N N N N 40.312 -24.833 1.213 -1.827 -0.519 -8.093 N1 GSP 28
GSP C2 C2 C 0 1 N N N N N N 41.311 -24.534 2.099 -0.646 -1.110 -7.754 C2 GSP 29
GSP N2 N2 N 0 1 N N N N N N 42.330 -23.811 1.690 -0.008 -1.900 -8.677 N2 GSP 30
GSP N3 N3 N 0 1 N N N N N N 41.260 -24.824 3.393 -0.098 -0.940 -6.572 N3 GSP 31
GSP C4 C4 C 0 1 Y N N N N N 40.065 -25.317 3.772 -0.685 -0.177 -5.641 C4 GSP 32
GSP HOG2 2HOG H 0 0 N N N N N N 36.228 -31.670 14.091 -1.880 -0.901 8.791 HOG2 GSP 33
GSP HOG3 3HOG H 0 0 N N N N N N 36.308 -33.870 12.854 0.831 -1.260 7.528 HOG3 GSP 34
GSP HOB2 2HOB H 0 0 N N N N N N 34.891 -29.455 10.277 1.723 -1.047 5.128 HOB2 GSP 35
GSP HOA2 2HOA H 0 0 N N N N N N 38.924 -28.130 11.216 2.669 -0.732 2.759 HOA2 GSP 36
GSP "H5'1" 1H5* H 0 0 N N N N N N 40.462 -28.033 9.846 2.713 0.423 0.321 "H5'1" GSP 37
GSP "H5'2" 2H5* H 0 0 N N N N N N 40.638 -29.004 8.470 1.255 1.334 -0.140 "H5'2" GSP 38
GSP "H4'" H4* H 0 1 N N N N N N 42.184 -27.151 8.376 2.337 -1.142 -1.574 "H4'" GSP 39
GSP "H3'" H3* H 0 1 N N N N N N 40.075 -25.578 9.533 2.596 1.839 -2.005 "H3'" GSP 40
GSP "HO3'" *HO3 H 0 0 N N N N N N 41.588 -23.887 9.200 4.472 1.083 -3.080 "HO3'" GSP 41
GSP "H2'" H2* H 0 1 N N N N N N 38.843 -25.108 7.433 1.559 1.760 -4.070 "H2'" GSP 42
GSP "HO2'" *HO2 H 0 0 N N N N N N 39.625 -23.157 6.588 3.598 0.987 -4.842 "HO2'" GSP 43
GSP "H1'" H1* H 0 1 N N N N N N 41.546 -25.010 5.887 1.146 -1.230 -3.938 "H1'" GSP 44
GSP H8 H8 H 0 1 N N N N N N 37.956 -26.797 5.728 -1.395 1.433 -2.914 H8 GSP 45
GSP HN1 HN1 H 0 1 N N N N N N 40.458 -24.550 0.243 -2.204 -0.665 -8.975 HN1 GSP 46
GSP HN21 1HN2 H 0 0 N N N N N N 43.074 -23.588 2.350 0.834 -2.324 -8.451 HN21 GSP 47
GSP HN22 2HN2 H 0 0 N N N N N N 41.976 -22.942 1.288 -0.401 -2.039 -9.552 HN22 GSP 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GSP PG O3B SING N N 1
GSP PG S1G DOUB N N 2
GSP PG O2G SING N N 3
GSP PG O3G SING N N 4
GSP O3B PB SING N N 5
GSP O2G HOG2 SING N N 6
GSP O3G HOG3 SING N N 7
GSP PB O1B DOUB N N 8
GSP PB O2B SING N N 9
GSP PB O3A SING N N 10
GSP O2B HOB2 SING N N 11
GSP PA O1A DOUB N N 12
GSP PA O2A SING N N 13
GSP PA O3A SING N N 14
GSP PA "O5'" SING N N 15
GSP O2A HOA2 SING N N 16
GSP "O5'" "C5'" SING N N 17
GSP "C5'" "C4'" SING N N 18
GSP "C5'" "H5'1" SING N N 19
GSP "C5'" "H5'2" SING N N 20
GSP "C4'" "O4'" SING N N 21
GSP "C4'" "C3'" SING N N 22
GSP "C4'" "H4'" SING N N 23
GSP "O4'" "C1'" SING N N 24
GSP "C3'" "O3'" SING N N 25
GSP "C3'" "C2'" SING N N 26
GSP "C3'" "H3'" SING N N 27
GSP "O3'" "HO3'" SING N N 28
GSP "C2'" "O2'" SING N N 29
GSP "C2'" "C1'" SING N N 30
GSP "C2'" "H2'" SING N N 31
GSP "O2'" "HO2'" SING N N 32
GSP "C1'" N9 SING N N 33
GSP "C1'" "H1'" SING N N 34
GSP N9 C8 SING Y N 35
GSP N9 C4 SING Y N 36
GSP C8 N7 DOUB Y N 37
GSP C8 H8 SING N N 38
GSP N7 C5 SING Y N 39
GSP C5 C6 SING N N 40
GSP C5 C4 DOUB Y N 41
GSP C6 O6 DOUB N N 42
GSP C6 N1 SING N N 43
GSP N1 C2 SING N N 44
GSP N1 HN1 SING N N 45
GSP C2 N2 SING N N 46
GSP C2 N3 DOUB N N 47
GSP N2 HN21 SING N N 48
GSP N2 HN22 SING N N 49
GSP N3 C4 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GSP SMILES ACDLabs 10.04 S=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
GSP SMILES_CANONICAL CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=S)[C@@H](O)[C@H]3O
GSP SMILES CACTVS 3.341 NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O
GSP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=S)(O)O)O)O)N=C(NC2=O)N
GSP SMILES "OpenEye OEToolkits" 1.5.0 c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N=C(NC2=O)N
GSP InChI InChI 1.03 InChI=1S/C10H16N5O13P3S/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(26-9)1-25-29(19,20)27-30(21,22)28-31(23,24)32/h2-3,5-6,9,16-17H,1H2,(H,19,20)(H,21,22)(H2,23,24,32)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
GSP InChIKey InChI 1.03 XOFLBQFBSOEHOG-UUOKFMHZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GSP "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[(S)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]guanosine"
GSP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] dihydroxyphosphinothioyl hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GSP 'Create component' 1999-07-08 EBI
GSP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id GSP
_pdbe_chem_comp_drugbank_details.drugbank_id DB01864
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "5'-Guanosine-Diphosphate-Monothiophosphate"
_pdbe_chem_comp_drugbank_details.description
'Guanosine 5'-(trihydrogen diphosphate), monoanhydride with phosphorothioic acid. A stable GTP analog which enjoys a variety of physiological actions such as stimulation of guanine nucleotide-binding proteins, phosphoinositide hydrolysis, cyclic AMP accumulation, and activation of specific proto-oncogenes.'
_pdbe_chem_comp_drugbank_details.cas_number 37589-80-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
GSP gamma-Thio-GTP DrugBank ?
GSP 'GTP gamma S' DrugBank ?
GSP "Guanosine 5'-(gamma-S)triphosphate" DrugBank ?
GSP "guanosine 5'-[gamma-thio]triphosphate" DrugBank ?
GSP "Guanosine 5'-O-(3-thiotriphosphate)" DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id GSP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01864
_pdbe_chem_comp_drugbank_classification.parent 'Purine ribonucleoside diphosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine ribonucleoside diphosphates. These are purine ribobucleotides with diphosphate group linked to the ribose moiety.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
GSP DB01864 'ADP-ribosylation factor 6' Humans P62330 unknown 1
GSP DB01864 'Protein-glutamine gamma-glutamyltransferase E' Humans Q08188 unknown 2
GSP DB01864 'Cell division protein FtsZ' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WN95 unknown 3
GSP DB01864 'Ras-related protein Rab-11A' Humans P62491 unknown 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GSP PG P 19.986 3.710 1
GSP O3B O 18.771 2.830 2
GSP S1G S 21.201 4.589 3
GSP O2G O 20.865 2.495 4
GSP O3G O 19.106 4.925 5
GSP PB P 17.401 3.442 6
GSP O1B O 18.014 4.812 7
GSP O2B O 16.789 2.073 8
GSP PA P 14.817 3.175 9
GSP O1A O 15.697 1.960 10
GSP O2A O 13.938 4.391 11
GSP O3A O 16.032 4.055 12
GSP "O5'" O 13.602 2.296 13
GSP "C5'" C 12.233 2.908 14
GSP "C4'" C 11.018 2.029 15
GSP "O4'" O 11.015 0.529 16
GSP "C3'" C 9.592 2.495 17
GSP "O3'" O 9.131 3.922 18
GSP "C2'" C 8.708 1.283 19
GSP "O2'" O 7.208 1.285 20
GSP "C1'" C 9.588 0.068 21
GSP N9 N 9.122 -1.358 22
GSP C8 C 9.997 -2.565 23
GSP N7 N 9.122 -3.772 24
GSP C5 C 7.702 -3.315 25
GSP C6 C 6.404 -4.065 26
GSP O6 O 6.404 -5.565 27
GSP N1 N 5.104 -3.315 28
GSP C2 C 5.104 -1.815 29
GSP N2 N 3.805 -1.065 30
GSP N3 N 6.404 -1.065 31
GSP C4 C 7.702 -1.815 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GSP PG O3B SINGLE NONE 1
GSP PG S1G DOUBLE NONE 2
GSP PG O2G SINGLE NONE 3
GSP PG O3G SINGLE NONE 4
GSP O3B PB SINGLE NONE 5
GSP PB O1B DOUBLE NONE 6
GSP PB O2B SINGLE BEGINDASH 7
GSP PB O3A SINGLE NONE 8
GSP PA O1A DOUBLE NONE 9
GSP PA O2A SINGLE BEGINWEDGE 10
GSP PA O3A SINGLE NONE 11
GSP PA "O5'" SINGLE NONE 12
GSP "O5'" "C5'" SINGLE NONE 13
GSP "C4'" "C5'" SINGLE BEGINWEDGE 14
GSP "C4'" "O4'" SINGLE NONE 15
GSP "C4'" "C3'" SINGLE NONE 16
GSP "O4'" "C1'" SINGLE NONE 17
GSP "C3'" "O3'" SINGLE BEGINDASH 18
GSP "C3'" "C2'" SINGLE NONE 19
GSP "C2'" "O2'" SINGLE BEGINDASH 20
GSP "C2'" "C1'" SINGLE NONE 21
GSP "C1'" N9 SINGLE BEGINWEDGE 22
GSP N9 C8 SINGLE NONE 23
GSP N9 C4 SINGLE NONE 24
GSP C8 N7 DOUBLE NONE 25
GSP N7 C5 SINGLE NONE 26
GSP C5 C6 SINGLE NONE 27
GSP C5 C4 DOUBLE NONE 28
GSP C6 O6 DOUBLE NONE 29
GSP C6 N1 SINGLE NONE 30
GSP N1 C2 SINGLE NONE 31
GSP C2 N2 SINGLE NONE 32
GSP C2 N3 DOUBLE NONE 33
GSP N3 C4 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GSP MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
GSP imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
GSP phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
GSP purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
GSP pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
GSP ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GSP "C4'" S1 1
GSP "O4'" S1 1
GSP "C3'" S1 1
GSP "C2'" S1 1
GSP "C1'" S1 1
GSP N9 S1 1
GSP C8 S1 1
GSP N7 S1 1
GSP C5 S1 1
GSP C6 S1 1
GSP O6 S1 1
GSP N1 S1 1
GSP C2 S1 1
GSP N3 S1 1
GSP C4 S1 1
GSP C5 F1 1
GSP C4 F1 1
GSP N9 F1 1
GSP C8 F1 1
GSP N7 F1 1
GSP O3B F2 1
GSP PB F2 1
GSP O1B F2 1
GSP O2B F2 1
GSP O3A F2 1
GSP O2A F2 2
GSP PA F2 2
GSP O1A F2 2
GSP O3A F2 2
GSP "O5'" F2 2
GSP N7 F3 1
GSP C8 F3 1
GSP N9 F3 1
GSP C4 F3 1
GSP C5 F3 1
GSP C6 F3 1
GSP N1 F3 1
GSP C2 F3 1
GSP N3 F3 1
GSP C5 F4 1
GSP C6 F4 1
GSP N1 F4 1
GSP C2 F4 1
GSP N3 F4 1
GSP C4 F4 1
GSP "C2'" F5 1
GSP "C3'" F5 1
GSP "C4'" F5 1
GSP "O4'" F5 1
GSP "C1'" F5 1
GSP "C5'" F5 1
GSP "O5'" F5 1
GSP "O3'" F5 1
GSP "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GSP
_pdbe_chem_comp_rdkit_properties.exactmw 538.968
_pdbe_chem_comp_rdkit_properties.amw 539.249
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 18
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 22
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 204.384
_pdbe_chem_comp_rdkit_properties.tpsa 282.030
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.128
_pdbe_chem_comp_rdkit_properties.CrippenMR 102.058
_pdbe_chem_comp_rdkit_properties.chi0v 17.793
_pdbe_chem_comp_rdkit_properties.chi1v 12.629
_pdbe_chem_comp_rdkit_properties.chi2v 7.069
_pdbe_chem_comp_rdkit_properties.chi3v 7.069
_pdbe_chem_comp_rdkit_properties.chi4v 5.343
_pdbe_chem_comp_rdkit_properties.chi0n 30.293
_pdbe_chem_comp_rdkit_properties.chi1n 14.443
_pdbe_chem_comp_rdkit_properties.chi2n 2.954
_pdbe_chem_comp_rdkit_properties.chi3n 2.954
_pdbe_chem_comp_rdkit_properties.chi4n 1.933
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.140
_pdbe_chem_comp_rdkit_properties.kappa1 11.526
_pdbe_chem_comp_rdkit_properties.kappa2 8.901
_pdbe_chem_comp_rdkit_properties.kappa3 5.854
_pdbe_chem_comp_rdkit_properties.Phi 3.206
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GSP UniChem ChEMBL CHEMBL1204628
GSP UniChem DrugBank DB01864
GSP UniChem PDBe GSP
GSP UniChem 'KEGG LIGAND' C01806
GSP UniChem ChEBI 43000
GSP UniChem ZINC ZINC000008217391
GSP UniChem eMolecules 29936666
GSP UniChem PubChem 135398675
GSP UniChem ACTor 37589-80-3
GSP UniChem BRENDA 106233
GSP UniChem BRENDA 106234
GSP UniChem BRENDA 107602
GSP UniChem BRENDA 152888
GSP UniChem BRENDA 153333
GSP UniChem BRENDA 155563
GSP UniChem BRENDA 23783
GSP UniChem BRENDA 30024
GSP UniChem BRENDA 31492
GSP UniChem BRENDA 31823
GSP UniChem BRENDA 32242
GSP UniChem BRENDA 32899
GSP UniChem BRENDA 3473
GSP UniChem BRENDA 44996
GSP UniChem BRENDA 51125
GSP UniChem BRENDA 6532
GSP UniChem 'Probes And Drugs' PD060299
GSP UniChem Nikkaji J228.177E
GSP UniChem SureChEMBL SCHEMBL932313
GSP UniChem 'PubChem TPHARMA' 15432584
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GSP PG 5.295 0.854 -0.904 ETKDGv3 1
GSP O3B 4.935 0.736 -2.565 ETKDGv3 2
GSP S1G 6.967 0.481 -0.675 ETKDGv3 3
GSP O2G 5.010 2.428 -0.347 ETKDGv3 4
GSP O3G 4.364 -0.235 0.001 ETKDGv3 5
GSP PB 3.262 0.986 -2.747 ETKDGv3 6
GSP O1B 2.947 0.999 -4.225 ETKDGv3 7
GSP O2B 2.421 -0.305 -2.035 ETKDGv3 8
GSP PA 1.338 2.346 -1.315 ETKDGv3 9
GSP O1A 0.860 3.722 -0.908 ETKDGv3 10
GSP O2A 0.209 1.644 -2.369 ETKDGv3 11
GSP O3A 2.835 2.508 -2.102 ETKDGv3 12
GSP "O5'" 1.560 1.388 0.080 ETKDGv3 13
GSP "C5'" 0.300 1.112 0.644 ETKDGv3 14
GSP "C4'" 0.485 0.236 1.890 ETKDGv3 15
GSP "O4'" -0.757 0.103 2.552 ETKDGv3 16
GSP "C3'" 1.018 -1.157 1.529 ETKDGv3 17
GSP "O3'" 1.924 -1.598 2.510 ETKDGv3 18
GSP "C2'" -0.233 -1.996 1.555 ETKDGv3 19
GSP "O2'" 0.016 -3.319 1.952 ETKDGv3 20
GSP "C1'" -1.088 -1.268 2.579 ETKDGv3 21
GSP N9 -2.513 -1.450 2.302 ETKDGv3 22
GSP C8 -3.249 -2.670 2.472 ETKDGv3 23
GSP N7 -4.320 -2.745 1.736 ETKDGv3 24
GSP C5 -4.324 -1.525 1.005 ETKDGv3 25
GSP C6 -5.236 -1.089 -0.045 ETKDGv3 26
GSP O6 -6.236 -1.775 -0.382 ETKDGv3 27
GSP N1 -4.940 0.162 -0.685 ETKDGv3 28
GSP C2 -3.769 0.909 -0.278 ETKDGv3 29
GSP N2 -3.461 2.153 -0.906 ETKDGv3 30
GSP N3 -2.987 0.451 0.665 ETKDGv3 31
GSP C4 -3.286 -0.795 1.312 ETKDGv3 32
GSP HOG2 5.434 3.019 -1.019 ETKDGv3 33
GSP HOG3 4.530 -1.121 -0.411 ETKDGv3 34
GSP HOB2 2.782 -1.116 -2.475 ETKDGv3 35
GSP HOA2 -0.670 2.008 -2.091 ETKDGv3 36
GSP "H5'1" -0.348 0.567 -0.078 ETKDGv3 37
GSP "H5'2" -0.202 2.057 0.952 ETKDGv3 38
GSP "H4'" 1.194 0.755 2.573 ETKDGv3 39
GSP "H3'" 1.492 -1.205 0.521 ETKDGv3 40
GSP "HO3'" 2.788 -1.148 2.316 ETKDGv3 41
GSP "H2'" -0.726 -1.972 0.553 ETKDGv3 42
GSP "HO2'" 0.446 -3.767 1.178 ETKDGv3 43
GSP "H1'" -0.869 -1.656 3.600 ETKDGv3 44
GSP H8 -2.935 -3.469 3.130 ETKDGv3 45
GSP HN1 -5.562 0.526 -1.441 ETKDGv3 46
GSP HN21 -4.071 2.526 -1.667 ETKDGv3 47
GSP HN22 -2.628 2.706 -0.607 ETKDGv3 48
#