data_GYX
#
_chem_comp.id GYX
_chem_comp.name N-[(3-acetamidophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H31 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-09
_chem_comp.pdbx_modified_date 2020-10-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 429.554
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GYX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7D7T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GYX C19 C1 C 0 1 Y N N N N N -9.827 -31.777 1.552 4.911 -0.616 -0.587 C19 GYX 1
GYX C21 C2 C 0 1 N N N N N N -10.635 -27.100 -2.048 -0.545 3.521 0.031 C21 GYX 2
GYX C22 C3 C 0 1 N N N N N N -11.406 -26.148 -2.958 -1.644 2.802 -0.755 C22 GYX 3
GYX C23 C4 C 0 1 Y N N N N N -13.934 -27.463 -5.500 -4.201 0.314 0.387 C23 GYX 4
GYX C24 C5 C 0 1 Y N N N N N -15.327 -27.286 -5.539 -4.098 0.484 1.734 C24 GYX 5
GYX C25 C6 C 0 1 Y N N N N N -16.155 -28.186 -6.236 -4.736 -0.384 2.617 C25 GYX 6
GYX C26 C7 C 0 1 Y N N N N N -15.617 -29.278 -6.919 -5.483 -1.426 2.159 C26 GYX 7
GYX C27 C8 C 0 1 Y N N N N N -14.209 -29.459 -6.901 -5.613 -1.633 0.775 C27 GYX 8
GYX C10 C9 C 0 1 Y N N N N N -8.689 -31.026 1.246 3.594 -0.964 -0.819 C10 GYX 9
GYX C11 C10 C 0 1 Y N N N N N -7.426 -31.606 1.293 3.156 -2.245 -0.539 C11 GYX 10
GYX C12 C11 C 0 1 Y N N N N N -7.313 -32.954 1.616 4.035 -3.182 -0.027 C12 GYX 11
GYX C13 C12 C 0 1 Y N N N N N -8.455 -33.708 1.905 5.352 -2.841 0.206 C13 GYX 12
GYX C14 C13 C 0 1 Y N N N N N -9.734 -33.141 1.871 5.795 -1.555 -0.073 C14 GYX 13
GYX C16 C14 C 0 1 N N N N N N -12.332 -33.565 2.166 7.445 0.047 0.538 C16 GYX 14
GYX C17 C15 C 0 1 N N N N N N -13.464 -34.535 2.544 8.890 0.454 0.671 C17 GYX 15
GYX C01 C16 C 0 1 N N N N N N -13.656 -24.957 -4.666 -4.475 2.362 -0.985 C01 GYX 16
GYX C02 C17 C 0 1 N N R N N N -12.977 -26.416 -4.684 -3.502 1.263 -0.552 C02 GYX 17
GYX C04 C18 C 0 1 N N N N N N -13.387 -27.621 -2.624 -1.444 0.838 0.650 C04 GYX 18
GYX C05 C19 C 0 1 N N N N N N -12.674 -28.180 -1.378 -0.339 1.498 1.477 C05 GYX 19
GYX C06 C20 C 0 1 N N N N N N -11.496 -27.467 -0.970 0.431 2.486 0.596 C06 GYX 20
GYX C07 C21 C 0 1 N N N N N N -10.662 -28.205 0.090 1.090 1.743 -0.537 C07 GYX 21
GYX C09 C22 C 0 1 N N N N N N -8.778 -29.530 0.935 2.633 0.055 -1.377 C09 GYX 22
GYX C28 C23 C 0 1 Y N N N N N -13.392 -28.581 -6.232 -4.958 -0.754 -0.123 C28 GYX 23
GYX C29 C24 C 0 1 Y N N N N N -11.991 -28.801 -6.243 -5.089 -0.961 -1.507 C29 GYX 24
GYX C30 C25 C 0 1 Y N N N N N -11.477 -29.875 -6.940 -5.839 -1.999 -1.965 C30 GYX 25
GYX C31 C26 C 0 1 Y N N N N N -12.299 -30.772 -7.596 -6.483 -2.864 -1.081 C31 GYX 26
GYX C32 C27 C 0 1 Y N N N N N -13.671 -30.568 -7.581 -6.375 -2.698 0.265 C32 GYX 27
GYX N03 N1 N 0 1 N N N N N N -12.642 -26.699 -3.445 -2.351 1.869 0.132 N03 GYX 28
GYX N08 N2 N 0 1 N N N N N N -9.453 -28.957 -0.225 1.993 0.777 -0.275 N08 GYX 29
GYX N15 N3 N 0 1 N N N N N N -10.914 -33.982 2.194 7.131 -1.207 0.157 N15 GYX 30
GYX O18 O1 O 0 1 N N N N N N -12.638 -32.458 1.845 6.565 0.847 0.775 O18 GYX 31
GYX O20 O2 O 0 1 N N N N N N -11.006 -28.166 1.236 0.807 2.013 -1.685 O20 GYX 32
GYX H1 H1 H 0 1 N N N N N N -10.796 -31.299 1.543 5.253 0.384 -0.810 H1 GYX 33
GYX H2 H2 H 0 1 N N N N N N -10.337 -27.997 -2.611 -0.010 4.202 -0.631 H2 GYX 34
GYX H3 H3 H 0 1 N N N N N N -9.738 -26.599 -1.656 -0.992 4.085 0.849 H3 GYX 35
GYX H4 H4 H 0 1 N N N N N N -10.771 -25.900 -3.821 -2.349 3.536 -1.147 H4 GYX 36
GYX H5 H5 H 0 1 N N N N N N -11.631 -25.232 -2.393 -1.198 2.250 -1.582 H5 GYX 37
GYX H6 H6 H 0 1 N N N N N N -15.770 -26.445 -5.026 -3.511 1.303 2.123 H6 GYX 38
GYX H7 H7 H 0 1 N N N N N N -17.224 -28.029 -6.242 -4.638 -0.227 3.681 H7 GYX 39
GYX H8 H8 H 0 1 N N N N N N -16.257 -29.969 -7.448 -5.975 -2.089 2.856 H8 GYX 40
GYX H9 H9 H 0 1 N N N N N N -6.545 -31.018 1.082 2.126 -2.514 -0.721 H9 GYX 41
GYX H10 H10 H 0 1 N N N N N N -6.339 -33.421 1.644 3.690 -4.182 0.191 H10 GYX 42
GYX H11 H11 H 0 1 N N N N N N -8.347 -34.752 2.160 6.038 -3.574 0.607 H11 GYX 43
GYX H12 H12 H 0 1 N N N N N N -14.433 -34.022 2.452 9.390 0.338 -0.291 H12 GYX 44
GYX H13 H13 H 0 1 N N N N N N -13.444 -35.403 1.869 8.946 1.496 0.986 H13 GYX 45
GYX H14 H14 H 0 1 N N N N N N -13.325 -34.874 3.581 9.378 -0.177 1.413 H14 GYX 46
GYX H15 H15 H 0 1 N N N N N N -13.009 -24.258 -4.117 -5.328 1.912 -1.492 H15 GYX 47
GYX H16 H16 H 0 1 N N N N N N -13.787 -24.601 -5.698 -4.820 2.908 -0.107 H16 GYX 48
GYX H17 H17 H 0 1 N N N N N N -14.637 -25.015 -4.171 -3.969 3.048 -1.664 H17 GYX 49
GYX H18 H18 H 0 1 N N N N N N -12.067 -26.314 -5.294 -3.157 0.717 -1.430 H18 GYX 50
GYX H19 H19 H 0 1 N N N N N N -14.295 -27.102 -2.282 -0.998 0.295 -0.184 H19 GYX 51
GYX H20 H20 H 0 1 N N N N N N -13.669 -28.476 -3.257 -2.003 0.144 1.278 H20 GYX 52
GYX H21 H21 H 0 1 N N N N N N -13.388 -28.162 -0.542 -0.783 2.030 2.319 H21 GYX 53
GYX H22 H22 H 0 1 N N N N N N -12.385 -29.220 -1.591 0.344 0.733 1.849 H22 GYX 54
GYX H23 H23 H 0 1 N N N N N N -11.833 -26.535 -0.493 1.191 2.990 1.193 H23 GYX 55
GYX H24 H24 H 0 1 N N N N N N -7.737 -29.181 0.871 3.177 0.760 -2.007 H24 GYX 56
GYX H25 H25 H 0 1 N N N N N N -9.264 -29.076 1.811 1.872 -0.451 -1.971 H25 GYX 57
GYX H26 H26 H 0 1 N N N N N N -11.331 -28.133 -5.710 -4.596 -0.298 -2.204 H26 GYX 58
GYX H27 H27 H 0 1 N N N N N N -10.407 -30.018 -6.974 -5.938 -2.156 -3.029 H27 GYX 59
GYX H28 H28 H 0 1 N N N N N N -11.878 -31.621 -8.114 -7.069 -3.683 -1.471 H28 GYX 60
GYX H29 H29 H 0 1 N N N N N N -14.326 -31.259 -8.091 -6.879 -3.376 0.938 H29 GYX 61
GYX H31 H31 H 0 1 N N N N N N -9.114 -29.071 -1.159 2.219 0.561 0.643 H31 GYX 62
GYX H32 H32 H 0 1 N N N N N N -10.731 -34.929 2.458 7.831 -1.869 0.042 H32 GYX 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GYX C31 C32 DOUB Y N 1
GYX C31 C30 SING Y N 2
GYX C32 C27 SING Y N 3
GYX C30 C29 DOUB Y N 4
GYX C26 C27 DOUB Y N 5
GYX C26 C25 SING Y N 6
GYX C27 C28 SING Y N 7
GYX C29 C28 SING Y N 8
GYX C25 C24 DOUB Y N 9
GYX C28 C23 DOUB Y N 10
GYX C24 C23 SING Y N 11
GYX C23 C02 SING N N 12
GYX C02 C01 SING N N 13
GYX C02 N03 SING N N 14
GYX N03 C22 SING N N 15
GYX N03 C04 SING N N 16
GYX C22 C21 SING N N 17
GYX C04 C05 SING N N 18
GYX C21 C06 SING N N 19
GYX C05 C06 SING N N 20
GYX C06 C07 SING N N 21
GYX N08 C07 SING N N 22
GYX N08 C09 SING N N 23
GYX C07 O20 DOUB N N 24
GYX C09 C10 SING N N 25
GYX C10 C11 DOUB Y N 26
GYX C10 C19 SING Y N 27
GYX C11 C12 SING Y N 28
GYX C19 C14 DOUB Y N 29
GYX C12 C13 DOUB Y N 30
GYX O18 C16 DOUB N N 31
GYX C14 C13 SING Y N 32
GYX C14 N15 SING N N 33
GYX C16 N15 SING N N 34
GYX C16 C17 SING N N 35
GYX C19 H1 SING N N 36
GYX C21 H2 SING N N 37
GYX C21 H3 SING N N 38
GYX C22 H4 SING N N 39
GYX C22 H5 SING N N 40
GYX C24 H6 SING N N 41
GYX C25 H7 SING N N 42
GYX C26 H8 SING N N 43
GYX C11 H9 SING N N 44
GYX C12 H10 SING N N 45
GYX C13 H11 SING N N 46
GYX C17 H12 SING N N 47
GYX C17 H13 SING N N 48
GYX C17 H14 SING N N 49
GYX C01 H15 SING N N 50
GYX C01 H16 SING N N 51
GYX C01 H17 SING N N 52
GYX C02 H18 SING N N 53
GYX C04 H19 SING N N 54
GYX C04 H20 SING N N 55
GYX C05 H21 SING N N 56
GYX C05 H22 SING N N 57
GYX C06 H23 SING N N 58
GYX C09 H24 SING N N 59
GYX C09 H25 SING N N 60
GYX C29 H26 SING N N 61
GYX C30 H27 SING N N 62
GYX C31 H28 SING N N 63
GYX C32 H29 SING N N 64
GYX N08 H31 SING N N 65
GYX N15 H32 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GYX InChI InChI 1.03 InChI=1S/C27H31N3O2/c1-19(25-12-6-9-22-8-3-4-11-26(22)25)30-15-13-23(14-16-30)27(32)28-18-21-7-5-10-24(17-21)29-20(2)31/h3-12,17,19,23H,13-16,18H2,1-2H3,(H,28,32)(H,29,31)/t19-/m1/s1
GYX InChIKey InChI 1.03 YQRGVYYHRJBSOR-LJQANCHMSA-N
GYX SMILES_CANONICAL CACTVS 3.385 C[C@@H](N1CCC(CC1)C(=O)NCc2cccc(NC(C)=O)c2)c3cccc4ccccc34
GYX SMILES CACTVS 3.385 C[CH](N1CCC(CC1)C(=O)NCc2cccc(NC(C)=O)c2)c3cccc4ccccc34
GYX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@H](c1cccc2c1cccc2)N3CCC(CC3)C(=O)NCc4cccc(c4)NC(=O)C
GYX SMILES "OpenEye OEToolkits" 2.0.7 CC(c1cccc2c1cccc2)N3CCC(CC3)C(=O)NCc4cccc(c4)NC(=O)C
#
_pdbx_chem_comp_identifier.comp_id GYX
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[(3-acetamidophenyl)methyl]-1-[(1~{R})-1-naphthalen-1-ylethyl]piperidine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GYX 'Create component' 2020-10-09 PDBJ
GYX 'Initial release' 2020-11-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GYX C19 C 5.598 -3.776 1
GYX C21 C 6.897 2.974 2
GYX C22 C 8.196 3.724 3
GYX C23 C 10.794 5.224 4
GYX C24 C 9.495 5.974 5
GYX C25 C 9.495 7.474 6
GYX C26 C 10.794 8.224 7
GYX C27 C 12.093 7.474 8
GYX C10 C 4.299 -3.026 9
GYX C11 C 3.000 -3.776 10
GYX C12 C 3.000 -5.276 11
GYX C13 C 4.299 -6.026 12
GYX C14 C 5.598 -5.276 13
GYX C16 C 6.897 -7.526 14
GYX C17 C 8.196 -8.276 15
GYX C01 C 12.093 2.974 16
GYX C02 C 10.794 3.724 17
GYX C04 C 9.495 1.474 18
GYX C05 C 8.196 0.724 19
GYX C06 C 6.897 1.474 20
GYX C07 C 5.598 0.724 21
GYX C09 C 4.299 -1.526 22
GYX C28 C 12.093 5.974 23
GYX C29 C 13.434 5.172 24
GYX C30 C 14.793 5.943 25
GYX C31 C 14.793 7.505 26
GYX C32 C 13.434 8.276 27
GYX N03 N 9.495 2.974 28
GYX N08 N 5.598 -0.776 29
GYX N15 N 6.897 -6.026 30
GYX O18 O 5.598 -8.276 31
GYX O20 O 4.299 1.474 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GYX C31 C32 DOUBLE NONE 1
GYX C31 C30 SINGLE NONE 2
GYX C32 C27 SINGLE NONE 3
GYX C30 C29 DOUBLE NONE 4
GYX C26 C27 DOUBLE NONE 5
GYX C26 C25 SINGLE NONE 6
GYX C27 C28 SINGLE NONE 7
GYX C29 C28 SINGLE NONE 8
GYX C25 C24 DOUBLE NONE 9
GYX C28 C23 DOUBLE NONE 10
GYX C24 C23 SINGLE NONE 11
GYX C23 C02 SINGLE NONE 12
GYX C02 C01 SINGLE BEGINWEDGE 13
GYX C02 N03 SINGLE NONE 14
GYX N03 C22 SINGLE NONE 15
GYX N03 C04 SINGLE NONE 16
GYX C22 C21 SINGLE NONE 17
GYX C04 C05 SINGLE NONE 18
GYX C21 C06 SINGLE NONE 19
GYX C05 C06 SINGLE NONE 20
GYX C06 C07 SINGLE NONE 21
GYX N08 C07 SINGLE NONE 22
GYX N08 C09 SINGLE NONE 23
GYX C07 O20 DOUBLE NONE 24
GYX C09 C10 SINGLE NONE 25
GYX C10 C11 SINGLE NONE 26
GYX C10 C19 DOUBLE NONE 27
GYX C11 C12 DOUBLE NONE 28
GYX C19 C14 SINGLE NONE 29
GYX C12 C13 SINGLE NONE 30
GYX O18 C16 DOUBLE NONE 31
GYX C14 C13 DOUBLE NONE 32
GYX C14 N15 SINGLE NONE 33
GYX C16 N15 SINGLE NONE 34
GYX C16 C17 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GYX MurckoScaffold S1 scaffold O=C(NCc1ccccc1)C1CCN(Cc2cccc3ccccc23)CC1 InChI=1S/C24H26N2O/c27-24(25-17-19-7-2-1-3-8-19)21-13-15-26(16-14-21)18-22-11-6-10-20-9-4-5-12-23(20)22/h1-12,21H,13-18H2,(H,25,27) SWXIWNCVTFPLDP-UHFFFAOYSA-N
GYX amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
GYX napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
GYX phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GYX C19 S1 1
GYX C21 S1 1
GYX C22 S1 1
GYX C23 S1 1
GYX C24 S1 1
GYX C25 S1 1
GYX C26 S1 1
GYX C27 S1 1
GYX C10 S1 1
GYX C11 S1 1
GYX C12 S1 1
GYX C13 S1 1
GYX C14 S1 1
GYX C02 S1 1
GYX C04 S1 1
GYX C05 S1 1
GYX C06 S1 1
GYX C07 S1 1
GYX C09 S1 1
GYX C28 S1 1
GYX C29 S1 1
GYX C30 S1 1
GYX C31 S1 1
GYX C32 S1 1
GYX N03 S1 1
GYX N08 S1 1
GYX O20 S1 1
GYX N08 F1 1
GYX C07 F1 1
GYX O20 F1 1
GYX C06 F1 1
GYX N15 F1 2
GYX C16 F1 2
GYX O18 F1 2
GYX C17 F1 2
GYX C24 F2 1
GYX C25 F2 1
GYX C26 F2 1
GYX C27 F2 1
GYX C28 F2 1
GYX C23 F2 1
GYX C29 F2 1
GYX C30 F2 1
GYX C31 F2 1
GYX C32 F2 1
GYX C19 F3 1
GYX C10 F3 1
GYX C11 F3 1
GYX C12 F3 1
GYX C13 F3 1
GYX C14 F3 1
GYX C23 F3 2
GYX C28 F3 2
GYX C27 F3 2
GYX C26 F3 2
GYX C25 F3 2
GYX C24 F3 2
GYX C27 F3 3
GYX C32 F3 3
GYX C31 F3 3
GYX C30 F3 3
GYX C29 F3 3
GYX C28 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id GYX
_pdbe_chem_comp_rdkit_properties.exactmw 429.242
_pdbe_chem_comp_rdkit_properties.amw 429.564
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 233.031
_pdbe_chem_comp_rdkit_properties.tpsa 61.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.969
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.690
_pdbe_chem_comp_rdkit_properties.chi0v 15.658
_pdbe_chem_comp_rdkit_properties.chi1v 8.473
_pdbe_chem_comp_rdkit_properties.chi2v 3.667
_pdbe_chem_comp_rdkit_properties.chi3v 3.667
_pdbe_chem_comp_rdkit_properties.chi4v 2.313
_pdbe_chem_comp_rdkit_properties.chi0n 46.658
_pdbe_chem_comp_rdkit_properties.chi1n 23.868
_pdbe_chem_comp_rdkit_properties.chi2n 3.667
_pdbe_chem_comp_rdkit_properties.chi3n 3.667
_pdbe_chem_comp_rdkit_properties.chi4n 2.313
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.180
_pdbe_chem_comp_rdkit_properties.kappa1 5.652
_pdbe_chem_comp_rdkit_properties.kappa2 9.962
_pdbe_chem_comp_rdkit_properties.kappa3 5.168
_pdbe_chem_comp_rdkit_properties.Phi 1.760
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GYX UniChem ChEMBL CHEMBL3233809
GYX UniChem PDBe GYX
GYX UniChem ChEBI 149900
GYX UniChem ZINC ZINC000169312118
GYX UniChem PubChem 86276129
GYX UniChem Nikkaji J3.333.886D
GYX UniChem BindingDb 50007788
GYX UniChem BRENDA 200927
GYX UniChem BRENDA 260882
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GYX C19 4.677 -0.413 -0.307 ETKDGv3 1
GYX C21 -0.923 -2.067 -0.771 ETKDGv3 2
GYX C22 -2.058 -1.521 0.105 ETKDGv3 3
GYX C23 -3.950 0.766 0.394 ETKDGv3 4
GYX C24 -4.442 0.158 1.663 ETKDGv3 5
GYX C25 -5.748 -0.021 1.880 ETKDGv3 6
GYX C26 -6.730 0.398 0.869 ETKDGv3 7
GYX C27 -6.319 0.988 -0.262 ETKDGv3 8
GYX C10 4.483 -1.501 -1.074 ETKDGv3 9
GYX C11 5.294 -2.718 -0.832 ETKDGv3 10
GYX C12 6.203 -2.736 0.148 ETKDGv3 11
GYX C13 6.413 -1.540 0.988 ETKDGv3 12
GYX C14 5.707 -0.418 0.766 ETKDGv3 13
GYX C16 5.732 2.085 1.174 ETKDGv3 14
GYX C17 5.743 3.194 2.175 ETKDGv3 15
GYX C01 -2.036 2.263 0.847 ETKDGv3 16
GYX C02 -2.440 0.920 0.206 ETKDGv3 17
GYX C04 -0.248 -0.006 0.910 ETKDGv3 18
GYX C05 0.529 -1.299 1.194 ETKDGv3 19
GYX C06 0.314 -2.366 0.094 ETKDGv3 20
GYX C07 1.543 -2.545 -0.763 ETKDGv3 21
GYX C09 3.411 -1.506 -2.129 ETKDGv3 22
GYX C28 -4.864 1.216 -0.510 ETKDGv3 23
GYX C29 -4.506 1.952 -1.754 ETKDGv3 24
GYX C30 -5.452 2.328 -2.624 ETKDGv3 25
GYX C31 -6.882 2.043 -2.389 ETKDGv3 26
GYX C32 -7.295 1.422 -1.280 ETKDGv3 27
GYX N03 -1.713 -0.242 0.798 ETKDGv3 28
GYX N08 2.092 -1.444 -1.505 ETKDGv3 29
GYX N15 5.912 0.729 1.609 ETKDGv3 30
GYX O18 5.650 2.362 -0.053 ETKDGv3 31
GYX O20 2.098 -3.677 -0.815 ETKDGv3 32
GYX H1 4.051 0.458 -0.449 ETKDGv3 33
GYX H2 -0.694 -1.321 -1.562 ETKDGv3 34
GYX H3 -1.259 -3.000 -1.274 ETKDGv3 35
GYX H4 -2.310 -2.278 0.879 ETKDGv3 36
GYX H5 -2.962 -1.427 -0.535 ETKDGv3 37
GYX H6 -3.740 -0.148 2.428 ETKDGv3 38
GYX H7 -6.088 -0.471 2.804 ETKDGv3 39
GYX H8 -7.783 0.231 1.057 ETKDGv3 40
GYX H9 5.145 -3.602 -1.439 ETKDGv3 41
GYX H10 6.789 -3.628 0.329 ETKDGv3 42
GYX H11 7.153 -1.575 1.778 ETKDGv3 43
GYX H12 5.206 2.878 3.095 ETKDGv3 44
GYX H13 6.791 3.449 2.433 ETKDGv3 45
GYX H14 5.239 4.093 1.761 ETKDGv3 46
GYX H15 -2.701 3.080 0.492 ETKDGv3 47
GYX H16 -1.002 2.546 0.560 ETKDGv3 48
GYX H17 -2.108 2.203 1.954 ETKDGv3 49
GYX H18 -2.177 0.958 -0.871 ETKDGv3 50
GYX H19 0.147 0.465 -0.016 ETKDGv3 51
GYX H20 -0.053 0.686 1.757 ETKDGv3 52
GYX H21 1.609 -1.059 1.319 ETKDGv3 53
GYX H22 0.177 -1.704 2.169 ETKDGv3 54
GYX H23 0.123 -3.334 0.613 ETKDGv3 55
GYX H24 3.548 -0.621 -2.789 ETKDGv3 56
GYX H25 3.481 -2.410 -2.772 ETKDGv3 57
GYX H26 -3.488 2.233 -1.977 ETKDGv3 58
GYX H27 -5.169 2.867 -3.519 ETKDGv3 59
GYX H28 -7.610 2.358 -3.126 ETKDGv3 60
GYX H29 -8.353 1.241 -1.136 ETKDGv3 61
GYX H31 1.567 -0.544 -1.557 ETKDGv3 62
GYX H32 6.274 0.575 2.578 ETKDGv3 63
#