data_H0A
#
_chem_comp.id H0A
_chem_comp.name 1-[(2S)-2-(4-methoxyphenyl)-2,3,6,7-tetrahydro-1H-azepin-1-yl]ethan-1-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H19 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-06-08
_chem_comp.pdbx_modified_date 2019-03-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 245.317
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H0A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QH8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H0A C4 C1 C 0 1 Y N N N N N 34.403 -43.357 76.576 0.403 -0.529 0.260 C4 H0A 1
H0A C5 C2 C 0 1 N N S N N N 35.590 -42.838 75.817 -1.077 -0.617 0.531 C5 H0A 2
H0A C6 C3 C 0 1 N N N N N N 35.345 -42.815 74.312 -1.701 -1.676 -0.385 C6 H0A 3
H0A C7 C4 C 0 1 N N N N N N 36.553 -42.303 73.518 -3.013 -2.126 0.216 C7 H0A 4
H0A C8 C5 C 0 1 N N N N N N 37.834 -43.163 73.424 -4.046 -1.341 0.209 C8 H0A 5
H0A C10 C6 C 0 1 N N N N N N 37.031 -44.815 75.279 -3.116 0.931 0.517 C10 H0A 6
H0A C13 C7 C 0 1 Y N N N N N 34.297 -44.658 77.118 1.260 -0.079 1.248 C13 H0A 7
H0A O1 O1 O 0 1 N N N N N N 38.259 -44.167 77.668 0.221 1.471 -0.513 O1 H0A 8
H0A C11 C8 C 0 1 N N N N N N 37.444 -43.347 77.307 -0.933 1.682 -0.206 C11 H0A 9
H0A C12 C9 C 0 1 N N N N N N 37.242 -42.131 78.195 -1.513 3.065 -0.360 C12 H0A 10
H0A N N1 N 0 1 N N N N N N 36.759 -43.637 76.159 -1.697 0.681 0.273 N H0A 11
H0A C9 C10 C 0 1 N N N N N N 37.789 -44.584 73.948 -3.960 0.039 -0.401 C9 H0A 12
H0A C3 C11 C 0 1 Y N N N N N 33.336 -42.468 76.767 0.902 -0.904 -0.974 C3 H0A 13
H0A C2 C12 C 0 1 Y N N N N N 32.189 -42.863 77.477 2.259 -0.829 -1.222 C2 H0A 14
H0A C14 C13 C 0 1 Y N N N N N 33.154 -45.058 77.823 2.617 -0.002 1.004 C14 H0A 15
H0A C1 C14 C 0 1 Y N N N N N 32.089 -44.165 78.013 3.121 -0.378 -0.233 C1 H0A 16
H0A O O2 O 0 1 N N N N N N 30.971 -44.599 78.714 4.456 -0.304 -0.475 O H0A 17
H0A C C15 C 0 1 N N N N N N 29.897 -43.738 79.126 5.283 0.170 0.589 C H0A 18
H0A H1 H1 H 0 1 N N N N N N 35.770 -41.802 76.140 -1.239 -0.897 1.572 H1 H0A 19
H0A H2 H2 H 0 1 N N N N N N 34.486 -42.159 74.106 -1.879 -1.247 -1.371 H2 H0A 20
H0A H3 H3 H 0 1 N N N N N N 35.114 -43.837 73.978 -1.026 -2.527 -0.473 H3 H0A 21
H0A H4 H4 H 0 1 N N N N N N 36.509 -41.343 73.025 -3.091 -3.109 0.656 H4 H0A 22
H0A H5 H5 H 0 1 N N N N N N 38.740 -42.761 72.995 -4.977 -1.677 0.643 H5 H0A 23
H0A H6 H6 H 0 1 N N N N N N 36.059 -45.262 75.025 -3.351 0.707 1.557 H6 H0A 24
H0A H7 H7 H 0 1 N N N N N N 37.622 -45.531 75.869 -3.341 1.978 0.311 H7 H0A 25
H0A H8 H8 H 0 1 N N N N N N 35.111 -45.356 76.987 0.867 0.213 2.211 H8 H0A 26
H0A H9 H9 H 0 1 N N N N N N 37.907 -42.200 79.069 -0.752 3.736 -0.759 H9 H0A 27
H0A H10 H10 H 0 1 N N N N N N 37.477 -41.219 77.627 -2.360 3.029 -1.045 H10 H0A 28
H0A H11 H11 H 0 1 N N N N N N 36.196 -42.093 78.533 -1.846 3.429 0.611 H11 H0A 29
H0A H12 H12 H 0 1 N N N N N N 37.308 -45.207 73.179 -3.490 -0.024 -1.383 H12 H0A 30
H0A H13 H13 H 0 1 N N N N N N 38.827 -44.918 74.094 -4.962 0.458 -0.499 H13 H0A 31
H0A H14 H14 H 0 1 N N N N N N 33.396 -41.468 76.364 0.231 -1.255 -1.743 H14 H0A 32
H0A H15 H15 H 0 1 N N N N N N 31.377 -42.164 77.614 2.649 -1.122 -2.186 H15 H0A 33
H0A H16 H16 H 0 1 N N N N N N 33.093 -46.060 78.222 3.286 0.350 1.775 H16 H0A 34
H0A H17 H17 H 0 1 N N N N N N 29.139 -44.328 79.662 4.979 1.180 0.864 H17 H0A 35
H0A H18 H18 H 0 1 N N N N N N 30.290 -42.955 79.791 5.178 -0.488 1.452 H18 H0A 36
H0A H19 H19 H 0 1 N N N N N N 29.440 -43.272 78.240 6.324 0.179 0.264 H19 H0A 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H0A C8 C7 DOUB N N 1
H0A C8 C9 SING N N 2
H0A C7 C6 SING N N 3
H0A C9 C10 SING N N 4
H0A C6 C5 SING N N 5
H0A C10 N SING N N 6
H0A C5 N SING N N 7
H0A C5 C4 SING N N 8
H0A N C11 SING N N 9
H0A C4 C3 DOUB Y N 10
H0A C4 C13 SING Y N 11
H0A C3 C2 SING Y N 12
H0A C13 C14 DOUB Y N 13
H0A C11 O1 DOUB N N 14
H0A C11 C12 SING N N 15
H0A C2 C1 DOUB Y N 16
H0A C14 C1 SING Y N 17
H0A C1 O SING N N 18
H0A O C SING N N 19
H0A C5 H1 SING N N 20
H0A C6 H2 SING N N 21
H0A C6 H3 SING N N 22
H0A C7 H4 SING N N 23
H0A C8 H5 SING N N 24
H0A C10 H6 SING N N 25
H0A C10 H7 SING N N 26
H0A C13 H8 SING N N 27
H0A C12 H9 SING N N 28
H0A C12 H10 SING N N 29
H0A C12 H11 SING N N 30
H0A C9 H12 SING N N 31
H0A C9 H13 SING N N 32
H0A C3 H14 SING N N 33
H0A C2 H15 SING N N 34
H0A C14 H16 SING N N 35
H0A C H17 SING N N 36
H0A C H18 SING N N 37
H0A C H19 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H0A SMILES ACDLabs 12.01 c1(ccc(cc1)OC)C2N(CCC=CC2)C(=O)C
H0A InChI InChI 1.03 InChI=1S/C15H19NO2/c1-12(17)16-11-5-3-4-6-15(16)13-7-9-14(18-2)10-8-13/h3-4,7-10,15H,5-6,11H2,1-2H3/t15-/m0/s1
H0A InChIKey InChI 1.03 GDQRKUSTNBZDEQ-HNNXBMFYSA-N
H0A SMILES_CANONICAL CACTVS 3.385 COc1ccc(cc1)[C@@H]2CC=CCCN2C(C)=O
H0A SMILES CACTVS 3.385 COc1ccc(cc1)[CH]2CC=CCCN2C(C)=O
H0A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(=O)N1CCC=CC[C@H]1c2ccc(cc2)OC
H0A SMILES "OpenEye OEToolkits" 2.0.6 CC(=O)N1CCC=CCC1c2ccc(cc2)OC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H0A "SYSTEMATIC NAME" ACDLabs 12.01 1-[(2S)-2-(4-methoxyphenyl)-2,3,6,7-tetrahydro-1H-azepin-1-yl]ethan-1-one
H0A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 1-[(2~{S})-2-(4-methoxyphenyl)-2,3,6,7-tetrahydroazepin-1-yl]ethanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H0A 'Create component' 2018-06-08 RCSB
H0A 'Initial release' 2019-03-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
H0A C4 C 7.915 -0.382 1
H0A C5 C 9.087 0.553 2
H0A C6 C 8.754 2.015 3
H0A C7 C 9.689 3.188 4
H0A C8 C 11.189 3.188 5
H0A C10 C 11.790 0.553 6
H0A C13 C 6.518 0.166 7
H0A O1 O 9.140 -2.348 8
H0A C11 C 10.439 -1.598 9
H0A C12 C 11.738 -2.348 10
H0A N N 10.439 -0.098 11
H0A C9 C 12.124 2.015 12
H0A C3 C 8.138 -1.866 13
H0A C2 C 6.965 -2.801 14
H0A C14 C 5.346 -0.769 15
H0A C1 C 5.569 -2.253 16
H0A O O 4.396 -3.188 17
H0A C C 3.000 -2.640 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
H0A C8 C7 DOUBLE NONE 1
H0A C8 C9 SINGLE NONE 2
H0A C7 C6 SINGLE NONE 3
H0A C9 C10 SINGLE NONE 4
H0A C6 C5 SINGLE NONE 5
H0A C10 N SINGLE NONE 6
H0A C5 N SINGLE NONE 7
H0A C5 C4 SINGLE BEGINDASH 8
H0A N C11 SINGLE NONE 9
H0A C4 C3 SINGLE NONE 10
H0A C4 C13 DOUBLE NONE 11
H0A C3 C2 DOUBLE NONE 12
H0A C13 C14 SINGLE NONE 13
H0A C11 O1 DOUBLE NONE 14
H0A C11 C12 SINGLE NONE 15
H0A C2 C1 SINGLE NONE 16
H0A C14 C1 DOUBLE NONE 17
H0A C1 O SINGLE NONE 18
H0A O C SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
H0A MurckoScaffold S1 scaffold 'C1=CC[C@@H](c2ccccc2)NCC1' InChI=1S/C12H15N/c1-3-7-11(8-4-1)12-9-5-2-6-10-13-12/h1-5,7-8,12-13H,6,9-10H2/t12-/m0/s1 CAXHUISUYFEVQE-LBPRGKRZSA-N
H0A amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
H0A phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
H0A C4 S1 1
H0A C5 S1 1
H0A C6 S1 1
H0A C7 S1 1
H0A C8 S1 1
H0A C10 S1 1
H0A C13 S1 1
H0A N S1 1
H0A C9 S1 1
H0A C3 S1 1
H0A C2 S1 1
H0A C14 S1 1
H0A C1 S1 1
H0A N F1 1
H0A C11 F1 1
H0A O1 F1 1
H0A C12 F1 1
H0A C4 F2 1
H0A C3 F2 1
H0A C2 F2 1
H0A C1 F2 1
H0A C14 F2 1
H0A C13 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id H0A
_pdbe_chem_comp_rdkit_properties.exactmw 245.142
_pdbe_chem_comp_rdkit_properties.amw 245.322
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.750
_pdbe_chem_comp_rdkit_properties.tpsa 29.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.418
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.620
_pdbe_chem_comp_rdkit_properties.chi0v 8.764
_pdbe_chem_comp_rdkit_properties.chi1v 4.533
_pdbe_chem_comp_rdkit_properties.chi2v 1.841
_pdbe_chem_comp_rdkit_properties.chi3v 1.841
_pdbe_chem_comp_rdkit_properties.chi4v 1.114
_pdbe_chem_comp_rdkit_properties.chi0n 27.764
_pdbe_chem_comp_rdkit_properties.chi1n 14.033
_pdbe_chem_comp_rdkit_properties.chi2n 1.841
_pdbe_chem_comp_rdkit_properties.chi3n 1.841
_pdbe_chem_comp_rdkit_properties.chi4n 1.114
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.770
_pdbe_chem_comp_rdkit_properties.kappa1 2.868
_pdbe_chem_comp_rdkit_properties.kappa2 5.715
_pdbe_chem_comp_rdkit_properties.kappa3 2.726
_pdbe_chem_comp_rdkit_properties.Phi 0.911
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
H0A UniChem PDBe H0A
H0A UniChem PubChem 138753225
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
H0A C4 0.763 -0.504 0.026 ETKDGv3 1
H0A C5 -0.683 -0.910 0.300 ETKDGv3 2
H0A C6 -1.137 -2.215 -0.428 ETKDGv3 3
H0A C7 -2.408 -2.083 -1.240 ETKDGv3 4
H0A C8 -3.562 -1.613 -0.730 ETKDGv3 5
H0A C10 -2.878 0.234 0.847 ETKDGv3 6
H0A C13 1.493 0.051 1.013 ETKDGv3 7
H0A O1 -1.145 0.729 -2.151 ETKDGv3 8
H0A C11 -1.450 1.146 -1.002 ETKDGv3 9
H0A C12 -1.699 2.607 -0.802 ETKDGv3 10
H0A N -1.617 0.217 0.087 ETKDGv3 11
H0A C9 -3.664 -1.079 0.676 ETKDGv3 12
H0A C3 1.370 -0.613 -1.330 ETKDGv3 13
H0A C2 2.624 -0.201 -1.549 ETKDGv3 14
H0A C14 2.881 0.497 0.770 ETKDGv3 15
H0A C1 3.429 0.377 -0.454 ETKDGv3 16
H0A O 4.742 0.784 -0.742 ETKDGv3 17
H0A C 5.637 1.360 0.205 ETKDGv3 18
H0A H1 -0.728 -1.163 1.386 ETKDGv3 19
H0A H2 -1.312 -3.007 0.332 ETKDGv3 20
H0A H3 -0.342 -2.626 -1.081 ETKDGv3 21
H0A H4 -2.392 -2.410 -2.276 ETKDGv3 22
H0A H5 -4.445 -1.590 -1.362 ETKDGv3 23
H0A H6 -2.656 0.392 1.925 ETKDGv3 24
H0A H7 -3.525 1.077 0.519 ETKDGv3 25
H0A H8 1.075 0.184 2.003 ETKDGv3 26
H0A H9 -0.981 3.200 -1.408 ETKDGv3 27
H0A H10 -2.733 2.856 -1.118 ETKDGv3 28
H0A H11 -1.565 2.875 0.267 ETKDGv3 29
H0A H12 -4.732 -0.895 0.920 ETKDGv3 30
H0A H13 -3.291 -1.842 1.392 ETKDGv3 31
H0A H14 0.803 -1.011 -2.160 ETKDGv3 32
H0A H15 3.051 -0.285 -2.540 ETKDGv3 33
H0A H16 3.434 0.921 1.596 ETKDGv3 34
H0A H17 5.825 0.647 1.036 ETKDGv3 35
H0A H18 6.601 1.582 -0.297 ETKDGv3 36
H0A H19 5.217 2.308 0.601 ETKDGv3 37
#