data_H1O
#
_chem_comp.id H1O
_chem_comp.name 2-(1-methylindol-4-yl)-7-(3,4,5-trimethoxyphenyl)-1~{H}-benzimidazole
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H23 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-20
_chem_comp.pdbx_modified_date 2021-10-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 413.468
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H1O
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7DBA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H1O C01 C1 C 0 1 Y N N N N N 17.520 66.577 48.104 3.694 -2.767 0.769 C01 H1O 1
H1O C02 C2 C 0 1 Y N N N N N 17.034 65.322 47.759 5.025 -2.406 0.714 C02 H1O 2
H1O C03 C3 C 0 1 Y N N N N N 16.927 64.953 46.393 5.383 -1.097 0.410 C03 H1O 3
H1O C04 C4 C 0 1 Y N N N N N 17.305 65.834 45.413 4.379 -0.144 0.159 C04 H1O 4
H1O C05 C5 C 0 1 Y N N N N N 17.801 67.114 45.766 3.024 -0.523 0.217 C05 H1O 5
H1O C06 C6 C 0 1 Y N N N N N 17.905 67.475 47.107 2.696 -1.842 0.519 C06 H1O 6
H1O C08 C7 C 0 1 Y N N N N N 16.578 63.929 44.479 6.390 0.862 -0.032 C08 H1O 7
H1O C09 C8 C 0 1 Y N N N N N 17.085 65.187 44.163 5.072 1.112 -0.120 C09 H1O 8
H1O C10 C9 C 0 1 Y N N N N N 18.222 68.096 44.676 1.962 0.468 -0.044 C10 H1O 9
H1O C12 C10 C 0 1 Y N N N N N 18.364 69.112 42.746 -0.033 1.391 -0.302 C12 H1O 10
H1O C13 C11 C 0 1 Y N N N N N 19.204 69.727 43.638 0.970 2.351 -0.516 C13 H1O 11
H1O C15 C12 C 0 1 Y N N N N N 18.274 69.588 41.412 -1.379 1.755 -0.415 C15 H1O 12
H1O C16 C13 C 0 1 Y N N N N N 19.038 70.680 41.009 -1.712 3.067 -0.732 C16 H1O 13
H1O C17 C14 C 0 1 Y N N N N N 19.895 71.308 41.918 -0.718 4.011 -0.937 C17 H1O 14
H1O C18 C15 C 0 1 Y N N N N N 19.984 70.842 43.225 0.610 3.665 -0.836 C18 H1O 15
H1O C19 C16 C 0 1 Y N N N N N 17.338 68.902 40.419 -2.444 0.747 -0.197 C19 H1O 16
H1O C20 C17 C 0 1 Y N N N N N 16.124 68.393 40.850 -3.503 1.026 0.666 C20 H1O 17
H1O C21 C18 C 0 1 Y N N N N N 15.274 67.771 39.949 -4.496 0.083 0.869 C21 H1O 18
H1O C22 C19 C 0 1 Y N N N N N 15.639 67.658 38.617 -4.439 -1.141 0.211 C22 H1O 19
H1O C23 C20 C 0 1 Y N N N N N 16.854 68.166 38.186 -3.384 -1.421 -0.651 C23 H1O 20
H1O C24 C21 C 0 1 Y N N N N N 17.703 68.789 39.087 -2.392 -0.478 -0.860 C24 H1O 21
H1O C27 C22 C 0 1 N N N N N N 14.057 66.813 41.712 -5.524 1.632 2.353 C27 H1O 22
H1O C28 C23 C 0 1 N N N N N N 14.731 65.639 37.846 -6.546 -2.017 -0.463 C28 H1O 23
H1O C30 C24 C 0 1 N N N N N N 18.593 68.213 36.612 -2.218 -2.838 -2.163 C30 H1O 24
H1O C31 C25 C 0 1 N N N N N N 16.008 62.639 46.495 7.905 -1.081 0.464 C31 H1O 25
H1O N07 N1 N 0 1 Y N N N N N 16.494 63.814 45.793 6.594 -0.452 0.285 N07 H1O 26
H1O N11 N2 N 0 1 Y N N N N N 17.768 68.098 43.432 0.617 0.210 -0.009 N11 H1O 27
H1O N14 N3 N 0 1 Y N N N N N 19.097 69.077 44.829 2.162 1.730 -0.340 N14 H1O 28
H1O O25 O1 O 0 1 N N N N N N 14.782 67.029 37.708 -5.417 -2.066 0.412 O25 H1O 29
H1O O26 O2 O 0 1 N N N N N N 14.047 67.257 40.385 -5.529 0.355 1.711 O26 H1O 30
H1O O29 O3 O 0 1 N N N N N N 17.222 68.052 36.840 -3.330 -2.618 -1.293 O29 H1O 31
H1O H1 H1 H 0 1 N N N N N N 17.600 66.858 49.144 3.428 -3.787 1.006 H1 H1O 32
H1O H2 H2 H 0 1 N N N N N N 16.738 64.627 48.531 5.791 -3.142 0.907 H2 H1O 33
H1O H3 H3 H 0 1 N N N N N N 18.284 68.450 47.376 1.660 -2.142 0.565 H3 H1O 34
H1O H4 H4 H 0 1 N N N N N N 16.298 63.169 43.765 7.171 1.591 -0.187 H4 H1O 35
H1O H5 H5 H 0 1 N N N N N N 17.272 65.588 43.178 4.612 2.060 -0.355 H5 H1O 36
H1O H6 H6 H 0 1 N N N N N N 18.969 71.042 39.994 -2.750 3.352 -0.820 H6 H1O 37
H1O H7 H7 H 0 1 N N N N N N 20.488 72.155 41.605 -0.989 5.027 -1.184 H7 H1O 38
H1O H8 H8 H 0 1 N N N N N N 20.646 71.327 43.927 1.376 4.410 -0.998 H8 H1O 39
H1O H9 H9 H 0 1 N N N N N N 15.840 68.481 41.888 -3.547 1.976 1.178 H9 H1O 40
H1O H10 H10 H 0 1 N N N N N N 18.649 69.187 38.751 -1.573 -0.696 -1.529 H10 H1O 41
H1O H11 H11 H 0 1 N N N N N N 13.062 66.426 41.977 -4.621 1.732 2.955 H11 H1O 42
H1O H12 H12 H 0 1 N N N N N N 14.804 66.013 41.825 -5.547 2.418 1.599 H12 H1O 43
H1O H13 H13 H 0 1 N N N N N N 14.314 67.651 42.377 -6.400 1.719 2.995 H13 H1O 44
H1O H14 H14 H 0 1 N N N N N N 14.039 65.221 37.100 -7.247 -2.807 -0.195 H14 H1O 45
H1O H15 H15 H 0 1 N N N N N N 15.735 65.218 37.691 -7.036 -1.048 -0.369 H15 H1O 46
H1O H16 H16 H 0 1 N N N N N N 14.378 65.384 38.856 -6.215 -2.159 -1.492 H16 H1O 47
H1O H17 H17 H 0 1 N N N N N N 18.801 68.110 35.537 -1.292 -2.769 -1.593 H17 H1O 48
H1O H18 H18 H 0 1 N N N N N N 18.906 69.211 36.952 -2.297 -3.829 -2.610 H18 H1O 49
H1O H19 H19 H 0 1 N N N N N N 19.150 67.445 37.168 -2.218 -2.084 -2.950 H19 H1O 50
H1O H20 H20 H 0 1 N N N N N N 16.047 62.817 47.580 8.207 -0.999 1.508 H20 H1O 51
H1O H21 H21 H 0 1 N N N N N N 14.970 62.435 46.194 7.844 -2.133 0.184 H21 H1O 52
H1O H22 H22 H 0 1 N N N N N N 16.639 61.774 46.243 8.638 -0.579 -0.167 H22 H1O 53
H1O H23 H23 H 0 1 N N N N N N 17.097 67.459 43.057 0.199 -0.644 0.185 H23 H1O 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H1O C30 O29 SING N N 1
H1O O29 C23 SING N N 2
H1O O25 C28 SING N N 3
H1O O25 C22 SING N N 4
H1O C23 C22 DOUB Y N 5
H1O C23 C24 SING Y N 6
H1O C22 C21 SING Y N 7
H1O C24 C19 DOUB Y N 8
H1O C21 O26 SING N N 9
H1O C21 C20 DOUB Y N 10
H1O O26 C27 SING N N 11
H1O C19 C20 SING Y N 12
H1O C19 C15 SING N N 13
H1O C16 C15 DOUB Y N 14
H1O C16 C17 SING Y N 15
H1O C15 C12 SING Y N 16
H1O C17 C18 DOUB Y N 17
H1O C12 N11 SING Y N 18
H1O C12 C13 DOUB Y N 19
H1O C18 C13 SING Y N 20
H1O N11 C10 SING Y N 21
H1O C13 N14 SING Y N 22
H1O C09 C08 DOUB Y N 23
H1O C09 C04 SING Y N 24
H1O C08 N07 SING Y N 25
H1O C10 N14 DOUB Y N 26
H1O C10 C05 SING N N 27
H1O C04 C05 DOUB Y N 28
H1O C04 C03 SING Y N 29
H1O C05 C06 SING Y N 30
H1O N07 C03 SING Y N 31
H1O N07 C31 SING N N 32
H1O C03 C02 DOUB Y N 33
H1O C06 C01 DOUB Y N 34
H1O C02 C01 SING Y N 35
H1O C01 H1 SING N N 36
H1O C02 H2 SING N N 37
H1O C06 H3 SING N N 38
H1O C08 H4 SING N N 39
H1O C09 H5 SING N N 40
H1O C16 H6 SING N N 41
H1O C17 H7 SING N N 42
H1O C18 H8 SING N N 43
H1O C20 H9 SING N N 44
H1O C24 H10 SING N N 45
H1O C27 H11 SING N N 46
H1O C27 H12 SING N N 47
H1O C27 H13 SING N N 48
H1O C28 H14 SING N N 49
H1O C28 H15 SING N N 50
H1O C28 H16 SING N N 51
H1O C30 H17 SING N N 52
H1O C30 H18 SING N N 53
H1O C30 H19 SING N N 54
H1O C31 H20 SING N N 55
H1O C31 H21 SING N N 56
H1O C31 H22 SING N N 57
H1O N11 H23 SING N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H1O InChI InChI 1.03 InChI=1S/C25H23N3O3/c1-28-12-11-17-18(8-6-10-20(17)28)25-26-19-9-5-7-16(23(19)27-25)15-13-21(29-2)24(31-4)22(14-15)30-3/h5-14H,1-4H3,(H,26,27)
H1O InChIKey InChI 1.03 YVHIIGJCOXHSPF-UHFFFAOYSA-N
H1O SMILES_CANONICAL CACTVS 3.385 COc1cc(cc(OC)c1OC)c2cccc3nc([nH]c23)c4cccc5n(C)ccc45
H1O SMILES CACTVS 3.385 COc1cc(cc(OC)c1OC)c2cccc3nc([nH]c23)c4cccc5n(C)ccc45
H1O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cn1ccc2c1cccc2c3[nH]c4c(cccc4n3)c5cc(c(c(c5)OC)OC)OC
H1O SMILES "OpenEye OEToolkits" 2.0.7 Cn1ccc2c1cccc2c3[nH]c4c(cccc4n3)c5cc(c(c(c5)OC)OC)OC
#
_pdbx_chem_comp_identifier.comp_id H1O
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 2-(1-methylindol-4-yl)-7-(3,4,5-trimethoxyphenyl)-1~{H}-benzimidazole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H1O 'Create component' 2020-10-20 PDBJ
H1O 'Initial release' 2021-10-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
H1O C01 C 14.241 -4.378 1
H1O C02 C 14.991 -3.079 2
H1O C03 C 14.241 -1.780 3
H1O C04 C 12.741 -1.780 4
H1O C05 C 11.991 -3.079 5
H1O C06 C 12.741 -4.378 6
H1O C08 C 13.491 0.514 7
H1O C09 C 12.284 -0.361 8
H1O C10 C 10.491 -3.079 9
H1O C12 C 8.196 -2.329 10
H1O C13 C 8.196 -3.829 11
H1O C15 C 6.897 -1.579 12
H1O C16 C 5.598 -2.329 13
H1O C17 C 5.598 -3.829 14
H1O C18 C 6.897 -4.580 15
H1O C19 C 6.897 -0.080 16
H1O C20 C 8.196 0.670 17
H1O C21 C 8.196 2.171 18
H1O C22 C 6.897 2.921 19
H1O C23 C 5.598 2.171 20
H1O C24 C 5.598 0.670 21
H1O C27 C 9.495 4.420 22
H1O C28 C 5.598 5.170 23
H1O C30 C 3.000 2.171 24
H1O C31 C 16.124 0.105 25
H1O N07 N 14.698 -0.361 26
H1O N11 N 9.616 -1.872 27
H1O N14 N 9.616 -4.287 28
H1O O25 O 6.897 4.420 29
H1O O26 O 9.495 2.921 30
H1O O29 O 4.299 2.921 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
H1O C30 O29 SINGLE NONE 1
H1O O29 C23 SINGLE NONE 2
H1O O25 C28 SINGLE NONE 3
H1O O25 C22 SINGLE NONE 4
H1O C23 C22 DOUBLE NONE 5
H1O C23 C24 SINGLE NONE 6
H1O C22 C21 SINGLE NONE 7
H1O C24 C19 DOUBLE NONE 8
H1O C21 O26 SINGLE NONE 9
H1O C21 C20 DOUBLE NONE 10
H1O O26 C27 SINGLE NONE 11
H1O C19 C20 SINGLE NONE 12
H1O C19 C15 SINGLE NONE 13
H1O C16 C15 DOUBLE NONE 14
H1O C16 C17 SINGLE NONE 15
H1O C15 C12 SINGLE NONE 16
H1O C17 C18 DOUBLE NONE 17
H1O C12 N11 SINGLE NONE 18
H1O C12 C13 DOUBLE NONE 19
H1O C18 C13 SINGLE NONE 20
H1O N11 C10 SINGLE NONE 21
H1O C13 N14 SINGLE NONE 22
H1O C09 C08 DOUBLE NONE 23
H1O C09 C04 SINGLE NONE 24
H1O C08 N07 SINGLE NONE 25
H1O C10 N14 DOUBLE NONE 26
H1O C10 C05 SINGLE NONE 27
H1O C04 C05 DOUBLE NONE 28
H1O C04 C03 SINGLE NONE 29
H1O C05 C06 SINGLE NONE 30
H1O N07 C03 SINGLE NONE 31
H1O N07 C31 SINGLE NONE 32
H1O C03 C02 DOUBLE NONE 33
H1O C06 C01 DOUBLE NONE 34
H1O C02 C01 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
H1O MurckoScaffold S1 scaffold 'c1ccc(-c2cccc3nc(-c4cccc5[nH]ccc45)[nH]c23)cc1' InChI=1S/C21H15N3/c1-2-6-14(7-3-1)15-8-4-11-19-20(15)24-21(23-19)17-9-5-10-18-16(17)12-13-22-18/h1-13,22H,(H,23,24) BFBMNQXTRYXOBG-UHFFFAOYSA-N
H1O benzimidazole F1 fragment 'c1ccc2[nH]cnc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)8-5-9-7/h1-5H,(H,8,9) HYZJCKYKOHLVJF-UHFFFAOYSA-N
H1O imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
H1O indole F3 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
H1O phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
H1O pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
H1O C01 S1 1
H1O C02 S1 1
H1O C03 S1 1
H1O C04 S1 1
H1O C05 S1 1
H1O C06 S1 1
H1O C08 S1 1
H1O C09 S1 1
H1O C10 S1 1
H1O C12 S1 1
H1O C13 S1 1
H1O C15 S1 1
H1O C16 S1 1
H1O C17 S1 1
H1O C18 S1 1
H1O C19 S1 1
H1O C20 S1 1
H1O C21 S1 1
H1O C22 S1 1
H1O C23 S1 1
H1O C24 S1 1
H1O N07 S1 1
H1O N11 S1 1
H1O N14 S1 1
H1O C12 F1 1
H1O N11 F1 1
H1O C10 F1 1
H1O N14 F1 1
H1O C13 F1 1
H1O C18 F1 1
H1O C17 F1 1
H1O C16 F1 1
H1O C15 F1 1
H1O C12 F2 1
H1O C13 F2 1
H1O N14 F2 1
H1O C10 F2 1
H1O N11 F2 1
H1O C03 F3 1
H1O C04 F3 1
H1O C09 F3 1
H1O C08 F3 1
H1O N07 F3 1
H1O C05 F3 1
H1O C06 F3 1
H1O C01 F3 1
H1O C02 F3 1
H1O C01 F4 1
H1O C06 F4 1
H1O C05 F4 1
H1O C04 F4 1
H1O C03 F4 1
H1O C02 F4 1
H1O C12 F4 2
H1O C15 F4 2
H1O C16 F4 2
H1O C17 F4 2
H1O C18 F4 2
H1O C13 F4 2
H1O C19 F4 3
H1O C24 F4 3
H1O C23 F4 3
H1O C22 F4 3
H1O C21 F4 3
H1O C20 F4 3
H1O C03 F5 1
H1O C04 F5 1
H1O C09 F5 1
H1O C08 F5 1
H1O N07 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id H1O
_pdbe_chem_comp_rdkit_properties.exactmw 413.174
_pdbe_chem_comp_rdkit_properties.amw 413.477
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.160
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 211.930
_pdbe_chem_comp_rdkit_properties.tpsa 61.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.410
_pdbe_chem_comp_rdkit_properties.CrippenMR 114.213
_pdbe_chem_comp_rdkit_properties.chi0v 15.066
_pdbe_chem_comp_rdkit_properties.chi1v 8.290
_pdbe_chem_comp_rdkit_properties.chi2v 4.306
_pdbe_chem_comp_rdkit_properties.chi3v 4.306
_pdbe_chem_comp_rdkit_properties.chi4v 2.967
_pdbe_chem_comp_rdkit_properties.chi0n 38.066
_pdbe_chem_comp_rdkit_properties.chi1n 19.737
_pdbe_chem_comp_rdkit_properties.chi2n 4.306
_pdbe_chem_comp_rdkit_properties.chi3n 4.306
_pdbe_chem_comp_rdkit_properties.chi4n 2.967
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.930
_pdbe_chem_comp_rdkit_properties.kappa1 6.293
_pdbe_chem_comp_rdkit_properties.kappa2 7.395
_pdbe_chem_comp_rdkit_properties.kappa3 2.990
_pdbe_chem_comp_rdkit_properties.Phi 1.501
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
H1O UniChem ChEMBL CHEMBL4852240
H1O UniChem PDBe H1O
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
H1O C01 3.335 3.038 0.301 ETKDGv3 1
H1O C02 4.760 2.762 0.606 ETKDGv3 2
H1O C03 5.169 1.492 0.561 ETKDGv3 3
H1O C04 4.269 0.405 0.252 ETKDGv3 4
H1O C05 2.965 0.610 -0.016 ETKDGv3 5
H1O C06 2.489 2.028 0.006 ETKDGv3 6
H1O C08 6.312 -0.448 0.745 ETKDGv3 7
H1O C09 5.073 -0.811 0.397 ETKDGv3 8
H1O C10 2.020 -0.487 -0.322 ETKDGv3 9
H1O C12 0.145 -1.626 -0.637 ETKDGv3 10
H1O C13 1.183 -2.387 -0.897 ETKDGv3 11
H1O C15 -1.238 -2.156 -0.655 ETKDGv3 12
H1O C16 -1.393 -3.467 -0.951 ETKDGv3 13
H1O C17 -0.210 -4.328 -1.246 ETKDGv3 14
H1O C18 1.031 -3.813 -1.222 ETKDGv3 15
H1O C19 -2.402 -1.277 -0.390 ETKDGv3 16
H1O C20 -2.472 0.059 -1.021 ETKDGv3 17
H1O C21 -3.505 0.891 -0.781 ETKDGv3 18
H1O C22 -4.610 0.441 0.128 ETKDGv3 19
H1O C23 -4.553 -0.780 0.690 ETKDGv3 20
H1O C24 -3.397 -1.673 0.417 ETKDGv3 21
H1O C27 -2.571 2.727 -2.222 ETKDGv3 22
H1O C28 -5.980 2.550 -0.053 ETKDGv3 23
H1O C30 -5.667 -2.441 2.189 ETKDGv3 24
H1O C31 7.539 1.657 1.542 ETKDGv3 25
H1O N07 6.463 0.974 0.835 ETKDGv3 26
H1O N11 0.596 -0.343 -0.244 ETKDGv3 27
H1O N14 2.398 -1.672 -0.706 ETKDGv3 28
H1O O25 -5.730 1.237 0.433 ETKDGv3 29
H1O O26 -3.565 2.166 -1.368 ETKDGv3 30
H1O O29 -5.602 -1.180 1.533 ETKDGv3 31
H1O H1 2.974 4.059 0.312 ETKDGv3 32
H1O H2 5.438 3.568 0.854 ETKDGv3 33
H1O H3 1.458 2.262 -0.226 ETKDGv3 34
H1O H4 7.106 -1.149 0.965 ETKDGv3 35
H1O H5 4.741 -1.835 0.299 ETKDGv3 36
H1O H6 -2.381 -3.910 -1.001 ETKDGv3 37
H1O H7 -0.355 -5.375 -1.480 ETKDGv3 38
H1O H8 1.896 -4.431 -1.426 ETKDGv3 39
H1O H9 -1.675 0.348 -1.692 ETKDGv3 40
H1O H10 -3.346 -2.644 0.892 ETKDGv3 41
H1O H11 -2.882 3.751 -2.514 ETKDGv3 42
H1O H12 -2.466 2.113 -3.141 ETKDGv3 43
H1O H13 -1.599 2.790 -1.688 ETKDGv3 44
H1O H14 -5.176 3.241 0.276 ETKDGv3 45
H1O H15 -6.941 2.911 0.368 ETKDGv3 46
H1O H16 -6.069 2.540 -1.160 ETKDGv3 47
H1O H17 -4.802 -2.560 2.874 ETKDGv3 48
H1O H18 -6.601 -2.493 2.784 ETKDGv3 49
H1O H19 -5.677 -3.261 1.439 ETKDGv3 50
H1O H20 7.279 1.751 2.617 ETKDGv3 51
H1O H21 8.483 1.080 1.443 ETKDGv3 52
H1O H22 7.697 2.666 1.109 ETKDGv3 53
H1O H23 0.044 0.429 0.190 ETKDGv3 54
#