data_H1T
#
_chem_comp.id H1T
_chem_comp.name
"[[[[bis($l^{1}-oxidanyl)-[$l^{1}-oxidanyl-[tris($l^{1}-oxidanyl)vanadiooxy]vanadio]oxy-vanadio]oxy-bis($l^{1}-oxidanyl)vanadio]oxy-oxidanylidene-vanadio]-[bis($l^{1}-oxidanyl)vanadio]-$l^{3}-oxidanyl]-tetrakis($l^{1}-oxidanyl)vanadium"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "O20 V7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-11-05
_chem_comp.pdbx_modified_date 2019-03-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 676.579
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H1T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 6HWR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H1T O10 O1 O 0 1 N N N N N N -62.031 -42.753 3.043 ? ? ? O10 H1T 1
H1T O11 O2 O 0 1 N N N N N N -65.382 -45.212 4.196 ? ? ? O11 H1T 2
H1T O12 O3 O 0 1 N N N N N N -60.959 -47.031 -0.172 ? ? ? O12 H1T 3
H1T O13 O4 O 0 1 N N N N N N -63.962 -41.003 3.531 ? ? ? O13 H1T 4
H1T O15 O5 O 0 1 N N N N N N -63.358 -47.749 0.128 ? ? ? O15 H1T 5
H1T O14 O6 O 0 1 N N N N N N -66.246 -44.874 1.553 ? ? ? O14 H1T 6
H1T O01 O7 O 0 1 N N N N N N -61.806 -42.998 8.963 ? ? ? O01 H1T 7
H1T O02 O8 O 0 1 N N N N N N -61.085 -45.157 10.247 ? ? ? O02 H1T 8
H1T O03 O9 O 0 1 N N N N N N -63.704 -44.656 10.870 ? ? ? O03 H1T 9
H1T O04 O10 O 0 1 N N N N N N -62.600 -45.928 8.207 ? ? ? O04 H1T 10
H1T O05 O11 O 0 1 N N N N N N -65.514 -46.214 9.138 ? ? ? O05 H1T 11
H1T O06 O12 O 0 1 N N N N N N -64.634 -45.488 6.571 ? ? ? O06 H1T 12
H1T O07 O13 O 0 1 N N N N N N -64.231 -43.967 8.592 ? ? ? O07 H1T 13
H1T O08 O14 O 0 1 N N N N N N -61.584 -49.683 0.349 ? ? ? O08 H1T 14
H1T O09 O15 O 0 1 N N N N N N -65.680 -47.622 1.252 ? ? ? O09 H1T 15
H1T O16 O16 O 0 1 N N N N N N -63.896 -45.869 2.057 ? ? ? O16 H1T 16
H1T O17 O17 O 0 1 N N N N N N -63.717 -43.072 5.244 ? ? ? O17 H1T 17
H1T O18 O18 O 0 1 N N N N N N -64.572 -43.381 2.658 ? ? ? O18 H1T 18
H1T O19 O19 O 0 1 N N N N N N -61.764 -47.992 2.188 ? ? ? O19 H1T 19
H1T O20 O20 O 0 1 N N N N N N -65.291 -41.273 6.777 ? ? ? O20 H1T 20
H1T V07 V1 V 0 1 N N N N N N -65.544 -45.030 8.113 ? ? ? P01 H1T 21
H1T V02 V2 V 0 1 N N N N N N -61.852 -48.126 0.653 ? ? ? P02 H1T 22
H1T V03 V3 V 0 1 N N N N N N -64.436 -46.743 0.787 ? ? ? P03 H1T 23
H1T V04 V4 V 0 1 N N N N N N -63.549 -42.571 3.623 ? ? ? P04 H1T 24
H1T V05 V5 V 0 1 N N N N N N -65.091 -44.921 2.670 ? ? ? P05 H1T 25
H1T V06 V6 V 0 1 N N N N N N -64.453 -42.660 6.685 ? ? ? P06 H1T 26
H1T V01 V7 V 0 1 N N N N N N -62.578 -44.611 9.394 ? ? ? V01 H1T 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H1T O10 V04 SING N N 1
H1T O11 V05 SING N N 2
H1T O12 V02 SING N N 3
H1T O13 V04 SING N N 4
H1T O15 V02 SING N N 5
H1T O15 V03 SING N N 6
H1T O14 V05 SING N N 7
H1T O01 V01 SING N N 8
H1T O02 V01 SING N N 9
H1T O03 V01 SING N N 10
H1T O04 V01 SING N N 11
H1T O05 V07 SING N N 12
H1T O06 V07 SING N N 13
H1T O07 V07 SING N N 14
H1T O07 V06 SING N N 15
H1T O07 V01 SING N N 16
H1T O08 V02 SING N N 17
H1T O09 V03 SING N N 18
H1T O16 V03 SING N N 19
H1T O16 V05 SING N N 20
H1T O17 V04 SING N N 21
H1T O17 V06 SING N N 22
H1T O18 V04 SING N N 23
H1T O18 V05 SING N N 24
H1T O19 V02 SING N N 25
H1T O20 V06 DOUB N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H1T InChI InChI 1.03 InChI=1S/14H2O.6O.7V/h14*1H2;;;;;;;;;;;;;/q;;;;;;;;;;;;;;;;;;;;;+1;3*+2;+3;+4/p-14
H1T InChIKey InChI 1.03 MFPKOXVPJRIEPC-UHFFFAOYSA-A
H1T SMILES_CANONICAL CACTVS 3.385 O.O.O.O.O.O.O.O.O.O.O.O.O.O.[V]O[V].[V]O[V]O[V]O[V]O[V]=O
H1T SMILES CACTVS 3.385 O.O.O.O.O.O.O.O.O.O.O.O.O.O.[V]O[V].[V]O[V]O[V]O[V]O[V]=O
H1T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 O=[V](O[V]([O])([O])O[V]([O])([O])O[V]([O])O[V]([O])([O])[O])O([V]([O])[O])[V]([O])([O])([O])[O]
H1T SMILES "OpenEye OEToolkits" 2.0.6 O=[V](O[V]([O])([O])O[V]([O])([O])O[V]([O])O[V]([O])([O])[O])O([V]([O])[O])[V]([O])([O])([O])[O]
#
_pdbx_chem_comp_identifier.comp_id H1T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"[[[[bis($l^{1}-oxidanyl)-[$l^{1}-oxidanyl-[tris($l^{1}-oxidanyl)vanadiooxy]vanadio]oxy-vanadio]oxy-bis($l^{1}-oxidanyl)vanadio]oxy-oxidanylidene-vanadio]-[bis($l^{1}-oxidanyl)vanadio]-$l^{3}-oxidanyl]-tetrakis($l^{1}-oxidanyl)vanadium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H1T 'Create component' 2018-11-05 EBI
H1T 'Other modification' 2018-11-05 EBI
H1T 'Initial release' 2019-04-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
H1T O10 O 0.866 -3.715 1
H1T O11 O 4.413 -0.163 2
H1T O12 O 1.811 4.335 3
H1T O13 O 2.366 -3.714 4
H1T O15 O 0.312 2.834 5
H1T O14 O 3.662 1.135 6
H1T O01 O -3.710 -0.633 7
H1T O02 O -3.166 1.044 8
H1T O03 O -1.403 1.046 9
H1T O04 O -0.857 -0.631 10
H1T O05 O -4.880 -1.671 11
H1T O06 O -3.579 -3.919 12
H1T O07 O -2.282 -1.669 13
H1T O08 O 1.060 5.633 14
H1T O09 O 2.910 2.836 15
H1T O16 O 1.613 0.585 16
H1T O17 O 0.316 -1.666 17
H1T O18 O 2.914 -1.664 18
H1T O19 O -0.989 5.083 19
H1T O20 O -0.981 -3.917 20
H1T V07 V -3.581 -2.419 21
H1T V02 V 0.311 4.334 22
H1T V03 V 1.612 2.085 23
H1T V04 V 1.615 -2.415 24
H1T V05 V 2.913 -0.164 25
H1T V06 V -0.983 -2.417 26
H1T V01 V -2.283 -0.169 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
H1T O10 V04 SINGLE NONE 1
H1T O11 V05 SINGLE NONE 2
H1T O12 V02 SINGLE NONE 3
H1T O13 V04 SINGLE NONE 4
H1T O15 V02 SINGLE NONE 5
H1T O15 V03 SINGLE NONE 6
H1T O14 V05 SINGLE NONE 7
H1T O01 V01 SINGLE NONE 8
H1T O02 V01 SINGLE NONE 9
H1T O03 V01 SINGLE NONE 10
H1T O04 V01 SINGLE NONE 11
H1T O05 V07 SINGLE NONE 12
H1T O06 V07 SINGLE NONE 13
H1T O07 V07 SINGLE NONE 14
H1T O07 V06 SINGLE NONE 15
H1T O07 V01 SINGLE NONE 16
H1T O08 V02 SINGLE NONE 17
H1T O09 V03 SINGLE NONE 18
H1T O16 V03 SINGLE NONE 19
H1T O16 V05 SINGLE NONE 20
H1T O17 V04 SINGLE NONE 21
H1T O17 V06 SINGLE NONE 22
H1T O18 V04 SINGLE NONE 23
H1T O18 V05 SINGLE NONE 24
H1T O19 V02 SINGLE NONE 25
H1T O20 V06 SINGLE NONE 26
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id H1T
_pdbe_chem_comp_rdkit_properties.exactmw 669.528
_pdbe_chem_comp_rdkit_properties.amw 676.574
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 20
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 27
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 179.163
_pdbe_chem_comp_rdkit_properties.tpsa 338.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.141
_pdbe_chem_comp_rdkit_properties.CrippenMR 15.723
_pdbe_chem_comp_rdkit_properties.chi0v 21.072
_pdbe_chem_comp_rdkit_properties.chi1v 19.572
_pdbe_chem_comp_rdkit_properties.chi2v 20.967
_pdbe_chem_comp_rdkit_properties.chi3v 20.967
_pdbe_chem_comp_rdkit_properties.chi4v 16.097
_pdbe_chem_comp_rdkit_properties.chi0n 11.295
_pdbe_chem_comp_rdkit_properties.chi1n 4.747
_pdbe_chem_comp_rdkit_properties.chi2n 1.233
_pdbe_chem_comp_rdkit_properties.chi3n 1.233
_pdbe_chem_comp_rdkit_properties.chi4n 0.714
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 3.131
_pdbe_chem_comp_rdkit_properties.kappa1 30.131
_pdbe_chem_comp_rdkit_properties.kappa2 10.378
_pdbe_chem_comp_rdkit_properties.kappa3 13.314
_pdbe_chem_comp_rdkit_properties.Phi 11.581
#
_pdbe_chem_comp_external_mappings.comp_id H1T
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id H1T
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
H1T O10 -0.246 1.055 -1.018 ETKDGv3 1
H1T O11 -1.337 -1.876 3.744 ETKDGv3 2
H1T O12 -6.370 0.378 2.215 ETKDGv3 3
H1T O13 -0.320 -1.807 0.402 ETKDGv3 4
H1T O15 -5.201 0.431 -0.811 ETKDGv3 5
H1T O14 -3.361 0.522 4.230 ETKDGv3 6
H1T O01 3.965 -0.398 -3.241 ETKDGv3 7
H1T O02 4.129 -2.958 -3.034 ETKDGv3 8
H1T O03 6.025 -1.982 -1.574 ETKDGv3 9
H1T O04 3.026 -2.209 -0.894 ETKDGv3 10
H1T O05 6.670 1.524 -2.431 ETKDGv3 11
H1T O06 6.333 2.080 0.745 ETKDGv3 12
H1T O07 4.531 -0.115 -0.796 ETKDGv3 13
H1T O08 -7.190 -1.949 0.160 ETKDGv3 14
H1T O09 -2.729 -1.447 -1.520 ETKDGv3 15
H1T O16 -3.601 -1.144 1.540 ETKDGv3 16
H1T O17 1.976 0.337 1.132 ETKDGv3 17
H1T O18 -1.101 0.878 2.032 ETKDGv3 18
H1T O19 -8.277 1.005 -0.274 ETKDGv3 19
H1T O20 1.875 1.272 -1.978 ETKDGv3 20
H1T V07 6.297 0.726 -0.655 ETKDGv3 21
H1T V02 -6.701 -0.047 0.325 ETKDGv3 22
H1T V03 -3.489 -0.215 -0.159 ETKDGv3 23
H1T V04 0.077 0.097 0.691 ETKDGv3 24
H1T V05 -2.314 -0.419 2.830 ETKDGv3 25
H1T V06 2.990 1.009 -0.406 ETKDGv3 26
H1T V01 4.345 -1.807 -1.253 ETKDGv3 27
#