data_H2V
#
_chem_comp.id H2V
_chem_comp.name
'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] aminoethanethioate'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C13 H26 N3 O8 P S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "S-glycyl-4'-phosphopantetheine"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-09-21
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 415.400
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H2V
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4H2V
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H2V C C C 0 1 N N N N N N 93.452 34.873 8.314 -5.540 -1.411 -2.004 C H2V 1
H2V N N N 0 1 N N N N N N 89.108 36.631 9.495 -1.421 -1.763 -0.262 N H2V 2
H2V O O O 0 1 N N N N N N 91.590 34.647 6.389 -5.158 1.070 -0.596 O H2V 3
H2V P P P 0 1 N N N N N N 92.156 33.789 5.177 -5.641 2.321 0.294 P H2V 4
H2V S S S 0 1 N N N N N N 85.232 37.179 16.135 7.175 0.301 0.885 S H2V 5
H2V C1 C1 C 0 1 N N N N N N 92.484 36.041 8.101 -4.304 -1.122 -1.150 C1 H2V 6
H2V N1 N1 N 0 1 N N N N N N 87.989 35.951 13.442 3.333 -0.563 -0.061 N1 H2V 7
H2V O1 O1 O 0 1 N N N N N N 91.581 32.367 5.317 -6.950 1.908 1.136 O1 H2V 8
H2V C2 C2 C 0 1 N N N N N N 93.251 37.353 8.278 -3.214 -0.500 -2.024 C2 H2V 9
H2V N2 N2 N 0 1 N N N N N N 84.105 39.923 17.942 10.477 1.430 -1.160 N2 H2V 10
H2V O2 O2 O 0 1 N N N N N N 91.724 34.457 3.867 -4.558 2.711 1.225 O2 H2V 11
H2V C3 C3 C 0 1 N N N N N N 91.870 36.022 6.688 -4.676 -0.149 -0.029 C3 H2V 12
H2V O3 O3 O 0 1 N N N N N N 93.755 33.760 5.327 -5.993 3.562 -0.669 O3 H2V 13
H2V C4 C4 C 0 1 N N S N N N 91.408 35.953 9.213 -3.788 -2.428 -0.542 C4 H2V 14
H2V O4 O4 O 0 1 N N N N N N 91.719 34.808 9.994 -4.812 -3.016 0.262 O4 H2V 15
H2V C5 C5 C 0 1 N N N N N N 89.920 35.844 8.798 -2.580 -2.140 0.313 C5 H2V 16
H2V O5 O5 O 0 1 N N N N N N 89.505 35.025 7.980 -2.651 -2.249 1.519 O5 H2V 17
H2V C6 C6 C 0 1 N N N N N N 87.733 36.253 9.771 -0.225 -1.566 0.560 C6 H2V 18
H2V O6 O6 O 0 1 N N N N N N 87.560 37.703 12.106 2.121 -1.116 1.713 O6 H2V 19
H2V C7 C7 C 0 1 N N N N N N 87.639 35.539 11.095 0.943 -1.143 -0.332 C7 H2V 20
H2V O7 O7 O 0 1 N N N N N N 85.041 39.366 14.718 7.945 0.820 -1.485 O7 H2V 21
H2V C8 C8 C 0 1 N N N N N N 87.748 36.497 12.256 2.174 -0.940 0.514 C8 H2V 22
H2V C9 C9 C 0 1 N N N N N N 87.515 36.562 14.674 4.529 -0.366 0.761 C9 H2V 23
H2V C10 C10 C 0 1 N N N N N N 86.004 36.643 14.589 5.698 0.057 -0.131 C10 H2V 24
H2V C11 C11 C 0 1 N N N N N N 84.664 38.783 15.700 8.297 0.754 -0.326 C11 H2V 25
H2V C12 C12 C 0 1 N N N N N N 83.631 39.356 16.693 9.722 1.072 0.048 C12 H2V 26
H2V H H H 0 1 N N N N N N 92.913 33.922 8.190 -5.304 -2.186 -2.734 H H2V 27
H2V HA HA H 0 1 N N N N N N 94.266 34.932 7.576 -6.353 -1.751 -1.364 HA H2V 28
H2V HB HB H 0 1 N N N N N N 93.872 34.926 9.329 -5.842 -0.502 -2.525 HB H2V 29
H2V HN HN H 0 1 N N N N N N 89.452 37.505 9.838 -1.379 -1.623 -1.221 HN H2V 30
H2V HN1 HN1 H 0 1 N N N N N N 88.509 35.098 13.489 3.375 -0.423 -1.020 HN1 H2V 31
H2V HO1 HO1 H 0 1 N N N N N N 91.055 32.161 4.553 -7.701 1.640 0.589 HO1 H2V 32
H2V H2 H2 H 0 1 N N N N N N 92.567 38.201 8.128 -3.620 0.362 -2.553 H2 H2V 33
H2V H2A H2A H 0 1 N N N N N N 93.672 37.397 9.293 -2.382 -0.181 -1.395 H2A H2V 34
H2V H2B H2B H 0 1 N N N N N N 94.066 37.404 7.541 -2.862 -1.237 -2.746 H2B H2V 35
H2V HN2 HN2 H 0 1 N N N N N N 83.326 40.251 18.477 11.437 1.647 -0.935 HN2 H2V 36
H2V H3 H3 H 0 1 N N N N N N 92.582 36.433 5.958 -3.796 0.057 0.580 H3 H2V 37
H2V H3A H3A H 0 1 N N N N N N 90.942 36.613 6.668 -5.453 -0.593 0.594 H3A H2V 38
H2V HO3 HO3 H 0 1 N N N N N N 94.152 34.168 4.566 -6.292 4.353 -0.199 HO3 H2V 39
H2V H4 H4 H 0 1 N N N N N N 91.509 36.852 9.839 -3.512 -3.116 -1.341 H4 H2V 40
H2V HO4 HO4 H 0 1 N N N N N N 91.080 34.717 10.691 -5.107 -2.458 0.994 HO4 H2V 41
H2V H6 H6 H 0 1 N N N N N N 87.108 37.158 9.802 -0.417 -0.788 1.300 H6 H2V 42
H2V H6A H6A H 0 1 N N N N N N 87.374 35.586 8.973 0.024 -2.497 1.069 H6A H2V 43
H2V H7 H7 H 0 1 N N N N N N 86.671 35.019 11.152 1.135 -1.921 -1.072 H7 H2V 44
H2V H7A H7A H 0 1 N N N N N N 88.454 34.804 11.162 0.694 -0.212 -0.841 H7A H2V 45
H2V H9 H9 H 0 1 N N N N N N 87.810 35.947 15.537 4.337 0.412 1.501 H9 H2V 46
H2V H9A H9A H 0 1 N N N N N N 87.940 37.571 14.781 4.778 -1.297 1.270 H9A H2V 47
H2V H10 H10 H 0 1 N N N N N N 85.614 35.647 14.330 5.448 0.988 -0.640 H10 H2V 48
H2V H10A H10A H 0 0 N N N N N N 85.736 37.359 13.798 5.890 -0.721 -0.871 H10A H2V 49
H2V H24 H24 H 0 1 N N N N N N 84.595 39.223 18.461 10.425 0.696 -1.850 H24 H2V 50
H2V H12 H12 H 0 1 N N N N N N 83.080 40.149 16.166 10.178 0.199 0.516 H12 H2V 51
H2V H26 H26 H 0 1 N N N N N N 82.941 38.539 16.950 9.737 1.908 0.747 H26 H2V 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H2V C H SING N N 1
H2V C HA SING N N 2
H2V C HB SING N N 3
H2V N C6 SING N N 4
H2V N HN SING N N 5
H2V O C3 SING N N 6
H2V P O SING N N 7
H2V P O1 SING N N 8
H2V P O3 SING N N 9
H2V C1 C SING N N 10
H2V C1 C2 SING N N 11
H2V C1 C4 SING N N 12
H2V N1 C9 SING N N 13
H2V N1 HN1 SING N N 14
H2V O1 HO1 SING N N 15
H2V C2 H2 SING N N 16
H2V C2 H2A SING N N 17
H2V C2 H2B SING N N 18
H2V N2 HN2 SING N N 19
H2V O2 P DOUB N N 20
H2V C3 C1 SING N N 21
H2V C3 H3 SING N N 22
H2V C3 H3A SING N N 23
H2V O3 HO3 SING N N 24
H2V C4 O4 SING N N 25
H2V C4 H4 SING N N 26
H2V O4 HO4 SING N N 27
H2V C5 N SING N N 28
H2V C5 C4 SING N N 29
H2V O5 C5 DOUB N N 30
H2V C6 C7 SING N N 31
H2V C6 H6 SING N N 32
H2V C6 H6A SING N N 33
H2V O6 C8 DOUB N N 34
H2V C7 C8 SING N N 35
H2V C7 H7 SING N N 36
H2V C7 H7A SING N N 37
H2V O7 C11 DOUB N N 38
H2V C8 N1 SING N N 39
H2V C9 H9 SING N N 40
H2V C9 H9A SING N N 41
H2V C10 S SING N N 42
H2V C10 C9 SING N N 43
H2V C10 H10 SING N N 44
H2V C10 H10A SING N N 45
H2V C11 S SING N N 46
H2V C11 C12 SING N N 47
H2V C12 N2 SING N N 48
H2V N2 H24 SING N N 49
H2V C12 H12 SING N N 50
H2V C12 H26 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H2V SMILES ACDLabs 12.01 'O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)O)CN'
H2V InChI InChI 1.03 'InChI=1S/C13H26N3O8PS/c1-13(2,8-24-25(21,22)23)11(19)12(20)16-4-3-9(17)15-5-6-26-10(18)7-14/h11,19H,3-8,14H2,1-2H3,(H,15,17)(H,16,20)(H2,21,22,23)/t11-/m1/s1'
H2V InChIKey InChI 1.03 CGYKHWUDQZHKBD-LLVKDONJSA-N
H2V SMILES_CANONICAL CACTVS 3.370 'CC(C)(CO[P](O)(O)=O)[C@H](O)C(=O)NCCC(=O)NCCSC(=O)CN'
H2V SMILES CACTVS 3.370 'CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCSC(=O)CN'
H2V SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CN)O'
H2V SMILES 'OpenEye OEToolkits' 1.7.6 'CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CN)O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H2V 'SYSTEMATIC NAME' ACDLabs 12.01 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] aminoethanethioate'
H2V 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 'S-[2-[3-[(3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl)amino]propanoylamino]ethyl] 2-azanylethanethioate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H2V 'Create component' 2012-09-21 RCSB
H2V 'Modify synonyms' 2012-09-26 RCSB
H2V 'Initial release' 2013-03-06 RCSB
H2V 'Modify synonyms' 2021-03-01 PDBE
H2V 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id H2V
_pdbx_chem_comp_synonyms.name "S-glycyl-4'-phosphopantetheine"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id H2V
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom P
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 4H2V
#
_pdbe_chem_comp_synonyms.comp_id H2V
_pdbe_chem_comp_synonyms.name "S-glycyl-4'-phosphopantetheine"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
H2V C C 8.252 0.966 1
H2V N N 12.899 0.417 2
H2V O O 6.404 -0.333 3
H2V P P 5.104 -1.083 4
H2V S S 21.992 -0.333 5
H2V C1 C 9.002 -0.333 6
H2V N1 N 18.095 0.417 7
H2V O1 O 3.805 -1.833 8
H2V C2 C 9.752 -1.632 9
H2V N2 N 25.889 0.417 10
H2V O2 O 5.854 -2.382 11
H2V C3 C 7.702 -1.083 12
H2V O3 O 4.354 0.216 13
H2V C4 C 10.301 0.417 14
H2V O4 O 10.301 1.917 15
H2V C5 C 11.600 -0.333 16
H2V O5 O 11.600 -1.833 17
H2V C6 C 14.198 -0.333 18
H2V O6 O 16.796 -1.833 19
H2V C7 C 15.497 0.417 20
H2V O7 O 23.291 1.917 21
H2V C8 C 16.796 -0.333 22
H2V C9 C 19.394 -0.333 23
H2V C10 C 20.693 0.417 24
H2V C11 C 23.291 0.417 25
H2V C12 C 24.590 -0.333 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
H2V N C6 SINGLE NONE 1
H2V O C3 SINGLE NONE 2
H2V P O SINGLE NONE 3
H2V P O1 SINGLE NONE 4
H2V P O3 SINGLE NONE 5
H2V C1 C SINGLE NONE 6
H2V C1 C2 SINGLE NONE 7
H2V C1 C4 SINGLE NONE 8
H2V N1 C9 SINGLE NONE 9
H2V O2 P DOUBLE NONE 10
H2V C3 C1 SINGLE NONE 11
H2V C4 O4 SINGLE BEGINDASH 12
H2V C5 N SINGLE NONE 13
H2V C5 C4 SINGLE NONE 14
H2V O5 C5 DOUBLE NONE 15
H2V C6 C7 SINGLE NONE 16
H2V O6 C8 DOUBLE NONE 17
H2V C7 C8 SINGLE NONE 18
H2V O7 C11 DOUBLE NONE 19
H2V C8 N1 SINGLE NONE 20
H2V C10 S SINGLE NONE 21
H2V C10 C9 SINGLE NONE 22
H2V C11 S SINGLE NONE 23
H2V C11 C12 SINGLE NONE 24
H2V C12 N2 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
H2V amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
H2V peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
H2V phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
H2V N F1 1
H2V C5 F1 1
H2V O5 F1 1
H2V C4 F1 1
H2V N1 F1 2
H2V C8 F1 2
H2V O6 F1 2
H2V C7 F1 2
H2V O7 F2 1
H2V C11 F2 1
H2V C12 F2 1
H2V N2 F2 1
H2V O F3 1
H2V P F3 1
H2V O2 F3 1
H2V O1 F3 1
H2V O3 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id H2V
_pdbe_chem_comp_rdkit_properties.exactmw 415.118
_pdbe_chem_comp_rdkit_properties.amw 415.405
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.769
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 192.233
_pdbe_chem_comp_rdkit_properties.tpsa 188.280
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.676
_pdbe_chem_comp_rdkit_properties.CrippenMR 94.940
_pdbe_chem_comp_rdkit_properties.chi0v 13.674
_pdbe_chem_comp_rdkit_properties.chi1v 7.804
_pdbe_chem_comp_rdkit_properties.chi2v 2.389
_pdbe_chem_comp_rdkit_properties.chi3v 2.389
_pdbe_chem_comp_rdkit_properties.chi4v 1.180
_pdbe_chem_comp_rdkit_properties.chi0n 37.963
_pdbe_chem_comp_rdkit_properties.chi1n 18.041
_pdbe_chem_comp_rdkit_properties.chi2n 1.604
_pdbe_chem_comp_rdkit_properties.chi3n 1.604
_pdbe_chem_comp_rdkit_properties.chi4n 0.702
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.010
_pdbe_chem_comp_rdkit_properties.kappa1 5.755
_pdbe_chem_comp_rdkit_properties.kappa2 11.650
_pdbe_chem_comp_rdkit_properties.kappa3 11.576
_pdbe_chem_comp_rdkit_properties.Phi 2.579
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
H2V UniChem PDBe H2V
H2V UniChem ZINC ZINC000098208980
H2V UniChem PubChem 70789276
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
H2V C 3.251 0.854 1.220 ETKDGv3 1
H2V N 0.033 0.800 1.857 ETKDGv3 2
H2V O 5.172 -0.773 -0.261 ETKDGv3 3
H2V P 6.058 -1.071 -1.688 ETKDGv3 4
H2V S -3.500 -0.708 -2.455 ETKDGv3 5
H2V C1 2.942 -0.571 0.705 ETKDGv3 6
H2V N1 -2.617 0.923 0.108 ETKDGv3 7
H2V O1 7.708 -1.085 -1.314 ETKDGv3 8
H2V C2 3.320 -1.596 1.801 ETKDGv3 9
H2V N2 -5.690 -0.507 -0.399 ETKDGv3 10
H2V O2 5.789 0.018 -2.702 ETKDGv3 11
H2V C3 3.795 -0.854 -0.562 ETKDGv3 12
H2V O3 5.629 -2.574 -2.340 ETKDGv3 13
H2V C4 1.427 -0.719 0.333 ETKDGv3 14
H2V O4 1.089 0.176 -0.698 ETKDGv3 15
H2V C5 0.497 -0.513 1.508 ETKDGv3 16
H2V O5 0.139 -1.512 2.191 ETKDGv3 17
H2V C6 -0.890 1.040 2.967 ETKDGv3 18
H2V O6 -3.472 2.452 1.657 ETKDGv3 19
H2V C7 -2.312 0.595 2.611 ETKDGv3 20
H2V O7 -5.506 0.118 -3.921 ETKDGv3 21
H2V C8 -2.850 1.375 1.448 ETKDGv3 22
H2V C9 -3.100 1.680 -1.047 ETKDGv3 23
H2V C10 -2.774 0.970 -2.365 ETKDGv3 24
H2V C11 -5.186 -0.155 -2.776 ETKDGv3 25
H2V C12 -6.216 -0.047 -1.682 ETKDGv3 26
H2V H 2.707 1.064 2.164 ETKDGv3 27
H2V HA 2.964 1.618 0.466 ETKDGv3 28
H2V HB 4.335 0.971 1.434 ETKDGv3 29
H2V HN 0.386 1.627 1.325 ETKDGv3 30
H2V HN1 -2.087 0.033 -0.033 ETKDGv3 31
H2V HO1 7.872 -0.220 -0.861 ETKDGv3 32
H2V H2 4.403 -1.543 2.042 ETKDGv3 33
H2V H2A 3.088 -2.631 1.467 ETKDGv3 34
H2V H2B 2.766 -1.399 2.743 ETKDGv3 35
H2V HN2 -5.607 -1.549 -0.435 ETKDGv3 36
H2V H3 3.544 -1.872 -0.939 ETKDGv3 37
H2V H3A 3.531 -0.109 -1.348 ETKDGv3 38
H2V HO3 6.231 -2.693 -3.117 ETKDGv3 39
H2V H4 1.272 -1.760 -0.039 ETKDGv3 40
H2V HO4 0.250 -0.160 -1.110 ETKDGv3 41
H2V H6 -0.539 0.495 3.870 ETKDGv3 42
H2V H6A -0.896 2.124 3.214 ETKDGv3 43
H2V H7 -2.970 0.752 3.494 ETKDGv3 44
H2V H7A -2.329 -0.490 2.376 ETKDGv3 45
H2V H9 -4.195 1.834 -0.962 ETKDGv3 46
H2V H9A -2.616 2.680 -1.052 ETKDGv3 47
H2V H10 -1.672 0.878 -2.464 ETKDGv3 48
H2V H10A -3.136 1.584 -3.218 ETKDGv3 49
H2V H24 -6.405 -0.293 0.334 ETKDGv3 50
H2V H12 -7.109 -0.650 -1.958 ETKDGv3 51
H2V H26 -6.527 1.016 -1.592 ETKDGv3 52
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