data_HC3
#
_chem_comp.id HC3
_chem_comp.name 25-HYDROXYCHOLESTEROL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H46 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (3BETA)-CHOLEST-5-ENE-3,25-DIOL
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-05-10
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 402.653
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HC3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ZHX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HC3 C18 C18 C 0 1 N N N N N N 57.564 32.601 28.880 -0.296 0.304 -0.926 C18 HC3 1
HC3 C13 C13 C 0 1 N N R N N N 56.778 33.906 28.708 -0.249 -0.050 0.562 C13 HC3 2
HC3 C12 C12 C 0 1 N N N N N N 57.585 35.120 29.181 0.386 1.098 1.348 C12 HC3 3
HC3 C11 C11 C 0 1 N N N N N N 57.843 35.035 30.690 1.759 1.407 0.732 C11 HC3 4
HC3 C9 C9 C 0 1 N N S N N N 56.547 34.924 31.505 2.647 0.167 0.675 C9 HC3 5
HC3 C10 C10 C 0 1 N N R N N N 56.795 34.840 33.018 3.959 0.506 -0.012 C10 HC3 6
HC3 C19 C19 C 0 1 N N N N N N 57.822 33.750 33.342 3.616 1.421 -1.189 C19 HC3 7
HC3 C1 C1 C 0 1 N N N N N N 57.294 36.194 33.537 4.876 1.278 0.940 C1 HC3 8
HC3 C2 C2 C 0 1 N N N N N N 57.323 36.294 35.067 6.184 1.616 0.222 C2 HC3 9
HC3 C3 C3 C 0 1 N N S N N N 55.920 36.091 35.647 6.913 0.325 -0.157 C3 HC3 10
HC3 O1 O1 O 0 1 N N N N N N 55.954 36.220 37.071 8.173 0.646 -0.751 O1 HC3 11
HC3 C4 C4 C 0 1 N N N N N N 55.408 34.698 35.269 6.065 -0.466 -1.157 C4 HC3 12
HC3 C5 C5 C 0 1 N N N N N N 55.493 34.493 33.754 4.691 -0.689 -0.548 C5 HC3 13
HC3 C6 C6 C 0 1 N N N N N N 54.383 34.013 33.068 4.217 -1.901 -0.523 C6 HC3 14
HC3 C7 C7 C 0 1 N N N N N N 54.292 33.798 31.697 2.877 -2.242 0.059 C7 HC3 15
HC3 C8 C8 C 0 1 N N S N N N 55.659 33.776 31.005 1.963 -1.015 -0.025 C8 HC3 16
HC3 C14 C14 C 0 1 N N S N N N 55.464 33.909 29.491 0.666 -1.296 0.712 C14 HC3 17
HC3 C15 C15 C 0 1 N N N N N N 54.673 32.793 28.809 -0.213 -2.402 0.118 C15 HC3 18
HC3 C16 C16 C 0 1 N N N N N N 54.949 33.086 27.331 -1.619 -2.072 0.687 C16 HC3 19
HC3 C17 C17 C 0 1 N N R N N N 56.150 34.041 27.316 -1.611 -0.559 1.022 C17 HC3 20
HC3 C20 C20 C 0 1 N N R N N N 57.054 33.809 26.098 -2.729 0.158 0.264 C20 HC3 21
HC3 C21 C21 C 0 1 N N N N N N 58.152 34.872 26.013 -2.662 1.658 0.555 C21 HC3 22
HC3 C22 C22 C 0 1 N N N N N N 56.189 33.817 24.833 -4.084 -0.389 0.716 C22 HC3 23
HC3 C23 C23 C 0 1 N N N N N N 56.937 33.507 23.534 -5.195 0.237 -0.129 C23 HC3 24
HC3 C24 C24 C 0 1 N N N N N N 55.918 33.275 22.414 -6.550 -0.310 0.323 C24 HC3 25
HC3 C25 C25 C 0 1 N N N N N N 56.539 33.181 21.017 -7.661 0.317 -0.523 C25 HC3 26
HC3 C26 C26 C 0 1 N N N N N N 57.600 32.079 20.962 -9.023 -0.134 0.010 C26 HC3 27
HC3 C27 C27 C 0 1 N N N N N N 55.439 32.872 19.999 -7.562 1.842 -0.445 C27 HC3 28
HC3 O2 O2 O 0 1 N N N N N N 57.135 34.442 20.705 -7.519 -0.102 -1.882 O2 HC3 29
HC3 H181 1H18 H 0 0 N N N N N N 56.976 31.717 28.535 0.703 0.574 -1.267 H181 HC3 30
HC3 H182 2H18 H 0 0 N N N N N N 58.555 32.653 28.372 -0.654 -0.555 -1.492 H182 HC3 31
HC3 H183 3H18 H 0 0 N N N N N N 57.913 32.472 29.930 -0.972 1.146 -1.077 H183 HC3 32
HC3 H121 1H12 H 0 0 N N N N N N 58.531 35.239 28.604 0.509 0.758 2.377 H121 HC3 33
HC3 H122 2H12 H 0 0 N N N N N N 57.095 36.080 28.896 -0.242 1.988 1.323 H122 HC3 34
HC3 H111 1H11 H 0 0 N N N N N N 58.540 34.199 30.930 2.254 2.171 1.332 H111 HC3 35
HC3 H112 2H11 H 0 0 N N N N N N 58.463 35.893 31.039 1.617 1.788 -0.279 H112 HC3 36
HC3 H9 H9 H 0 1 N N N N N N 55.990 35.875 31.337 2.865 -0.147 1.696 H9 HC3 37
HC3 H191 1H19 H 0 0 N N N N N N 58.002 33.689 34.440 4.513 1.606 -1.779 H191 HC3 38
HC3 H192 2H19 H 0 0 N N N N N N 57.523 32.763 32.917 2.862 0.943 -1.813 H192 HC3 39
HC3 H193 3H19 H 0 0 N N N N N N 58.771 33.896 32.776 3.229 2.368 -0.812 H193 HC3 40
HC3 H11 1H1 H 0 1 N N N N N N 58.294 36.435 33.107 5.090 0.665 1.816 H11 HC3 41
HC3 H12 2H1 H 0 1 N N N N N N 56.696 37.027 33.099 4.384 2.199 1.252 H12 HC3 42
HC3 H21 1H2 H 0 1 N N N N N N 58.061 35.588 35.514 6.818 2.209 0.881 H21 HC3 43
HC3 H22 2H2 H 0 1 N N N N N N 57.778 37.252 35.410 5.966 2.187 -0.680 H22 HC3 44
HC3 H3 H3 H 0 1 N N N N N N 55.236 36.866 35.229 7.076 -0.276 0.737 H3 HC3 45
HC3 HO1 HO1 H 0 1 N N N N N N 55.083 36.094 37.430 8.599 -0.193 -0.974 HO1 HC3 46
HC3 H41 1H4 H 0 1 N N N N N N 55.940 33.893 35.827 6.537 -1.427 -1.360 H41 HC3 47
HC3 H42 2H4 H 0 1 N N N N N N 54.378 34.514 35.656 5.968 0.099 -2.084 H42 HC3 48
HC3 H6 H6 H 0 1 N N N N N N 53.488 33.780 33.669 4.816 -2.697 -0.941 H6 HC3 49
HC3 H71 1H7 H 0 1 N N N N N N 53.718 32.867 31.476 2.997 -2.536 1.102 H71 HC3 50
HC3 H72 2H7 H 0 1 N N N N N N 53.615 34.545 31.220 2.435 -3.065 -0.503 H72 HC3 51
HC3 H8 H8 H 0 1 N N N N N N 56.160 32.809 31.244 1.758 -0.769 -1.067 H8 HC3 52
HC3 H14 H14 H 0 1 N N N N N N 54.910 34.876 29.455 0.865 -1.496 1.765 H14 HC3 53
HC3 H151 1H15 H 0 0 N N N N N N 54.922 31.759 29.144 0.120 -3.383 0.457 H151 HC3 54
HC3 H152 2H15 H 0 0 N N N N N N 53.595 32.732 29.089 -0.215 -2.350 -0.971 H152 HC3 55
HC3 H161 1H16 H 0 0 N N N N N N 55.098 32.169 26.713 -1.804 -2.654 1.590 H161 HC3 56
HC3 H162 2H16 H 0 0 N N N N N N 54.061 33.474 26.778 -2.385 -2.285 -0.059 H162 HC3 57
HC3 H17 H17 H 0 1 N N N N N N 55.881 35.112 27.161 -1.727 -0.410 2.096 H17 HC3 58
HC3 H20 H20 H 0 1 N N N N N N 57.560 32.820 26.199 -2.608 -0.010 -0.806 H20 HC3 59
HC3 H211 1H21 H 0 0 N N N N N N 58.808 34.703 25.128 -1.696 2.048 0.233 H211 HC3 60
HC3 H212 2H21 H 0 0 N N N N N N 57.726 35.902 26.017 -3.459 2.170 0.015 H212 HC3 61
HC3 H213 3H21 H 0 0 N N N N N N 58.742 34.927 26.957 -2.783 1.826 1.625 H213 HC3 62
HC3 H221 1H22 H 0 0 N N N N N N 55.324 33.123 24.953 -4.099 -1.472 0.591 H221 HC3 63
HC3 H222 2H22 H 0 0 N N N N N N 55.648 34.788 24.743 -4.244 -0.143 1.766 H222 HC3 64
HC3 H231 1H23 H 0 0 N N N N N N 57.681 34.295 23.274 -5.180 1.320 -0.004 H231 HC3 65
HC3 H232 2H23 H 0 0 N N N N N N 57.646 32.653 23.645 -5.036 -0.009 -1.179 H232 HC3 66
HC3 H241 1H24 H 0 0 N N N N N N 55.298 32.373 22.628 -6.565 -1.393 0.197 H241 HC3 67
HC3 H242 2H24 H 0 0 N N N N N N 55.124 34.058 22.438 -6.710 -0.063 1.373 H242 HC3 68
HC3 H261 1H26 H 0 0 N N N N N N 58.052 32.010 19.945 -9.132 0.185 1.046 H261 HC3 69
HC3 H262 2H26 H 0 0 N N N N N N 58.377 32.216 21.749 -9.814 0.313 -0.592 H262 HC3 70
HC3 H263 3H26 H 0 0 N N N N N N 57.191 31.097 21.297 -9.093 -1.220 -0.045 H263 HC3 71
HC3 H271 1H27 H 0 0 N N N N N N 55.891 32.803 18.982 -6.592 2.162 -0.824 H271 HC3 72
HC3 H272 2H27 H 0 0 N N N N N N 54.858 31.958 20.266 -8.354 2.288 -1.047 H272 HC3 73
HC3 H273 3H27 H 0 0 N N N N N N 54.602 33.608 20.042 -7.671 2.161 0.591 H273 HC3 74
HC3 HO2 HO2 H 0 1 N N N N N N 57.520 34.383 19.838 -7.587 -1.066 -1.886 HO2 HC3 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HC3 C18 C13 SING N N 1
HC3 C18 H181 SING N N 2
HC3 C18 H182 SING N N 3
HC3 C18 H183 SING N N 4
HC3 C13 C12 SING N N 5
HC3 C13 C14 SING N N 6
HC3 C13 C17 SING N N 7
HC3 C12 C11 SING N N 8
HC3 C12 H121 SING N N 9
HC3 C12 H122 SING N N 10
HC3 C11 C9 SING N N 11
HC3 C11 H111 SING N N 12
HC3 C11 H112 SING N N 13
HC3 C9 C10 SING N N 14
HC3 C9 C8 SING N N 15
HC3 C9 H9 SING N N 16
HC3 C10 C19 SING N N 17
HC3 C10 C1 SING N N 18
HC3 C10 C5 SING N N 19
HC3 C19 H191 SING N N 20
HC3 C19 H192 SING N N 21
HC3 C19 H193 SING N N 22
HC3 C1 C2 SING N N 23
HC3 C1 H11 SING N N 24
HC3 C1 H12 SING N N 25
HC3 C2 C3 SING N N 26
HC3 C2 H21 SING N N 27
HC3 C2 H22 SING N N 28
HC3 C3 O1 SING N N 29
HC3 C3 C4 SING N N 30
HC3 C3 H3 SING N N 31
HC3 O1 HO1 SING N N 32
HC3 C4 C5 SING N N 33
HC3 C4 H41 SING N N 34
HC3 C4 H42 SING N N 35
HC3 C5 C6 DOUB N N 36
HC3 C6 C7 SING N N 37
HC3 C6 H6 SING N N 38
HC3 C7 C8 SING N N 39
HC3 C7 H71 SING N N 40
HC3 C7 H72 SING N N 41
HC3 C8 C14 SING N N 42
HC3 C8 H8 SING N N 43
HC3 C14 C15 SING N N 44
HC3 C14 H14 SING N N 45
HC3 C15 C16 SING N N 46
HC3 C15 H151 SING N N 47
HC3 C15 H152 SING N N 48
HC3 C16 C17 SING N N 49
HC3 C16 H161 SING N N 50
HC3 C16 H162 SING N N 51
HC3 C17 C20 SING N N 52
HC3 C17 H17 SING N N 53
HC3 C20 C21 SING N N 54
HC3 C20 C22 SING N N 55
HC3 C20 H20 SING N N 56
HC3 C21 H211 SING N N 57
HC3 C21 H212 SING N N 58
HC3 C21 H213 SING N N 59
HC3 C22 C23 SING N N 60
HC3 C22 H221 SING N N 61
HC3 C22 H222 SING N N 62
HC3 C23 C24 SING N N 63
HC3 C23 H231 SING N N 64
HC3 C23 H232 SING N N 65
HC3 C24 C25 SING N N 66
HC3 C24 H241 SING N N 67
HC3 C24 H242 SING N N 68
HC3 C25 C26 SING N N 69
HC3 C25 C27 SING N N 70
HC3 C25 O2 SING N N 71
HC3 C26 H261 SING N N 72
HC3 C26 H262 SING N N 73
HC3 C26 H263 SING N N 74
HC3 C27 H271 SING N N 75
HC3 C27 H272 SING N N 76
HC3 C27 H273 SING N N 77
HC3 O2 HO2 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HC3 SMILES ACDLabs 10.04 OC(C)(C)CCCC(C4C3(C(C1C(C2(C(=CC1)CC(O)CC2)C)CC3)CC4)C)C
HC3 SMILES_CANONICAL CACTVS 3.341 C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
HC3 SMILES CACTVS 3.341 C[CH](CCCC(C)(C)O)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
HC3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C
HC3 SMILES "OpenEye OEToolkits" 1.5.0 CC(CCCC(C)(C)O)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
HC3 InChI InChI 1.03 InChI=1S/C27H46O2/c1-18(7-6-14-25(2,3)29)22-10-11-23-21-9-8-19-17-20(28)12-15-26(19,4)24(21)13-16-27(22,23)5/h8,18,20-24,28-29H,6-7,9-17H2,1-5H3/t18-,20+,21+,22-,23+,24+,26+,27-/m1/s1
HC3 InChIKey InChI 1.03 INBGSXNNRGWLJU-ZHHJOTBYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HC3 "SYSTEMATIC NAME" ACDLabs 10.04 (3beta,14beta,17alpha)-cholest-5-ene-3,25-diol
HC3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (3S,8S,9S,10R,13R,14S,17R)-17-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-10,13-dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HC3 'Create component' 2005-05-10 RCSB
HC3 'Modify descriptor' 2011-06-04 RCSB
HC3 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HC3
_pdbx_chem_comp_synonyms.name (3BETA)-CHOLEST-5-ENE-3,25-DIOL
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id HC3
_pdbe_chem_comp_drugbank_details.drugbank_id DB04705
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 25-Hydroxycholesterol
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 2140-46-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
HC3 (3BETA)-CHOLEST-5-ENE-3,25-DIOL wwPDB ?
HC3 5-Cholestene-3beta,25-diol DrugBank ?
HC3 Cholest-5-ene-3beta,25-diol DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id HC3
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04705
_pdbe_chem_comp_drugbank_classification.parent 'Cholesterols and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Steroids and steroid derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as cholesterols and derivatives. These are compounds containing a 3-hydroxylated cholestane core.'
#
_pdbe_chem_comp_drugbank_targets.comp_id HC3
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04705
_pdbe_chem_comp_drugbank_targets.name 'Nuclear receptor ROR-gamma'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P51449
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HC3 C18 C 11.893 0.338 1
HC3 C13 C 11.893 -1.162 2
HC3 C12 C 10.594 -0.412 3
HC3 C11 C 9.295 -1.162 4
HC3 C9 C 9.295 -2.662 5
HC3 C10 C 7.930 -3.422 6
HC3 C19 C 7.942 -1.922 7
HC3 C1 C 6.540 -2.576 8
HC3 C2 C 5.118 -3.368 9
HC3 C3 C 5.106 -4.995 10
HC3 O1 O 3.804 -5.740 11
HC3 C4 C 6.515 -5.809 12
HC3 C5 C 7.918 -4.984 13
HC3 C6 C 9.271 -5.766 14
HC3 C7 C 10.618 -4.974 15
HC3 C8 C 10.594 -3.412 16
HC3 C14 C 11.893 -2.662 17
HC3 C15 C 13.312 -3.119 18
HC3 C16 C 14.188 -1.912 19
HC3 C17 C 13.312 -0.705 20
HC3 C20 C 13.779 0.721 21
HC3 C21 C 12.777 1.838 22
HC3 C22 C 15.246 1.030 23
HC3 C23 C 15.712 2.456 24
HC3 C24 C 17.180 2.765 25
HC3 C25 C 17.646 4.191 26
HC3 C26 C 18.112 5.617 27
HC3 C27 C 19.072 3.725 28
HC3 O2 O 16.220 4.657 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HC3 C13 C18 SINGLE BEGINWEDGE 1
HC3 C13 C12 SINGLE NONE 2
HC3 C13 C14 SINGLE NONE 3
HC3 C13 C17 SINGLE NONE 4
HC3 C12 C11 SINGLE NONE 5
HC3 C11 C9 SINGLE NONE 6
HC3 C9 C10 SINGLE NONE 7
HC3 C9 C8 SINGLE NONE 8
HC3 C10 C19 SINGLE BEGINWEDGE 9
HC3 C10 C1 SINGLE NONE 10
HC3 C10 C5 SINGLE NONE 11
HC3 C1 C2 SINGLE NONE 12
HC3 C2 C3 SINGLE NONE 13
HC3 C3 O1 SINGLE BEGINWEDGE 14
HC3 C3 C4 SINGLE NONE 15
HC3 C4 C5 SINGLE NONE 16
HC3 C5 C6 DOUBLE NONE 17
HC3 C6 C7 SINGLE NONE 18
HC3 C7 C8 SINGLE NONE 19
HC3 C8 C14 SINGLE NONE 20
HC3 C14 C15 SINGLE NONE 21
HC3 C15 C16 SINGLE NONE 22
HC3 C17 C16 SINGLE BEGINWEDGE 23
HC3 C17 C20 SINGLE NONE 24
HC3 C20 C21 SINGLE BEGINDASH 25
HC3 C20 C22 SINGLE NONE 26
HC3 C22 C23 SINGLE NONE 27
HC3 C23 C24 SINGLE NONE 28
HC3 C24 C25 SINGLE NONE 29
HC3 C25 C26 SINGLE NONE 30
HC3 C25 C27 SINGLE NONE 31
HC3 C25 O2 SINGLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HC3 MurckoScaffold S1 scaffold 'C1=C2CCCCC2[C@H]2CCC3CCC[C@H]3[C@@H]2C1' InChI=1S/C17H26/c1-2-6-14-12(4-1)8-10-17-15-7-3-5-13(15)9-11-16(14)17/h8,13-17H,1-7,9-11H2/t13-,14-,15+,16+,17-/m0/s1 CBKAHYBYIWZZPP-SIRPWMCASA-N
HC3 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
HC3 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
HC3 steroid-like F3 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HC3 C13 S1 1
HC3 C12 S1 1
HC3 C11 S1 1
HC3 C9 S1 1
HC3 C10 S1 1
HC3 C1 S1 1
HC3 C2 S1 1
HC3 C3 S1 1
HC3 C4 S1 1
HC3 C5 S1 1
HC3 C6 S1 1
HC3 C7 S1 1
HC3 C8 S1 1
HC3 C14 S1 1
HC3 C15 S1 1
HC3 C16 S1 1
HC3 C17 S1 1
HC3 C13 F1 1
HC3 C12 F1 1
HC3 C11 F1 1
HC3 C9 F1 1
HC3 C8 F1 1
HC3 C14 F1 1
HC3 C10 F1 2
HC3 C1 F1 2
HC3 C2 F1 2
HC3 C3 F1 2
HC3 C4 F1 2
HC3 C5 F1 2
HC3 C13 F2 1
HC3 C14 F2 1
HC3 C15 F2 1
HC3 C16 F2 1
HC3 C17 F2 1
HC3 C2 F3 1
HC3 C3 F3 1
HC3 C4 F3 1
HC3 C5 F3 1
HC3 C10 F3 1
HC3 C1 F3 1
HC3 C9 F3 1
HC3 C8 F3 1
HC3 C7 F3 1
HC3 C6 F3 1
HC3 C14 F3 1
HC3 C13 F3 1
HC3 C12 F3 1
HC3 C11 F3 1
HC3 C17 F3 1
HC3 C16 F3 1
HC3 C15 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HC3
_pdbe_chem_comp_rdkit_properties.exactmw 402.350
_pdbe_chem_comp_rdkit_properties.amw 402.663
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.926
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 243.905
_pdbe_chem_comp_rdkit_properties.tpsa 40.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.504
_pdbe_chem_comp_rdkit_properties.CrippenMR 120.513
_pdbe_chem_comp_rdkit_properties.chi0v 14.316
_pdbe_chem_comp_rdkit_properties.chi1v 7.908
_pdbe_chem_comp_rdkit_properties.chi2v 4.278
_pdbe_chem_comp_rdkit_properties.chi3v 4.278
_pdbe_chem_comp_rdkit_properties.chi4v 2.946
_pdbe_chem_comp_rdkit_properties.chi0n 60.316
_pdbe_chem_comp_rdkit_properties.chi1n 30.725
_pdbe_chem_comp_rdkit_properties.chi2n 4.278
_pdbe_chem_comp_rdkit_properties.chi3n 4.278
_pdbe_chem_comp_rdkit_properties.chi4n 2.946
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.340
_pdbe_chem_comp_rdkit_properties.kappa1 3.636
_pdbe_chem_comp_rdkit_properties.kappa2 7.660
_pdbe_chem_comp_rdkit_properties.kappa3 3.863
_pdbe_chem_comp_rdkit_properties.Phi 0.960
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HC3 UniChem ChEMBL CHEMBL169046
HC3 UniChem DrugBank DB04705
HC3 UniChem 'Guide to Pharmacology' 2885
HC3 UniChem 'PubChem DOTF' 87550999
HC3 UniChem 'KEGG LIGAND' C15519
HC3 UniChem ChEBI 42977
HC3 UniChem ZINC ZINC000005751264
HC3 UniChem eMolecules 31216660
HC3 UniChem fdasrs 767JTD2N31
HC3 UniChem SureChEMBL SCHEMBL177267
HC3 UniChem NMRShiftDB 60020185
HC3 UniChem ACTor 2140-46-7
HC3 UniChem Recon xol25oh
HC3 UniChem 'EPA CompTox Dashboard' DTXSID5044023
HC3 UniChem LipidMaps LMST01010018
HC3 UniChem MetaboLights MTBLC42977
HC3 UniChem BRENDA 34932
HC3 UniChem BRENDA 3595
HC3 UniChem BRENDA 48270
HC3 UniChem Rhea 42977
HC3 UniChem ChemicalBook CB7412673
HC3 UniChem MedChemExpress HY-113134
HC3 UniChem 'Probes And Drugs' PD005887
HC3 UniChem CCDC BEGLUY
HC3 UniChem 'PubChem TPHARMA' 14781420
HC3 UniChem PubChem 65094
HC3 UniChem Nikkaji J80.397I
HC3 UniChem BindingDb 20182
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HC3 C18 0.132 -0.426 -2.034 ETKDGv3 1
HC3 C13 0.024 0.017 -0.539 ETKDGv3 2
HC3 C12 0.649 1.421 -0.334 ETKDGv3 3
HC3 C11 2.171 1.410 -0.606 ETKDGv3 4
HC3 C9 2.943 0.322 0.207 ETKDGv3 5
HC3 C10 4.484 0.246 -0.124 ETKDGv3 6
HC3 C19 4.729 0.038 -1.644 ETKDGv3 7
HC3 C1 5.164 1.577 0.330 ETKDGv3 8
HC3 C2 6.699 1.523 0.323 ETKDGv3 9
HC3 C3 7.210 0.375 1.204 ETKDGv3 10
HC3 O1 8.615 0.352 1.226 ETKDGv3 11
HC3 C4 6.653 -0.975 0.731 ETKDGv3 12
HC3 C5 5.140 -0.925 0.630 ETKDGv3 13
HC3 C6 4.432 -1.989 1.069 ETKDGv3 14
HC3 C7 2.932 -2.025 1.129 ETKDGv3 15
HC3 C8 2.270 -1.080 0.115 ETKDGv3 16
HC3 C14 0.764 -0.930 0.422 ETKDGv3 17
HC3 C15 -0.086 -2.187 0.467 ETKDGv3 18
HC3 C16 -1.522 -1.666 0.331 ETKDGv3 19
HC3 C17 -1.440 -0.153 -0.022 ETKDGv3 20
HC3 C20 -2.624 0.307 -0.946 ETKDGv3 21
HC3 C21 -2.515 1.802 -1.307 ETKDGv3 22
HC3 C22 -3.993 0.040 -0.253 ETKDGv3 23
HC3 C23 -5.194 0.135 -1.216 ETKDGv3 24
HC3 C24 -6.476 -0.528 -0.669 ETKDGv3 25
HC3 C25 -7.075 0.093 0.625 ETKDGv3 26
HC3 C26 -8.424 -0.596 0.917 ETKDGv3 27
HC3 C27 -7.305 1.611 0.464 ETKDGv3 28
HC3 O2 -6.199 -0.151 1.699 ETKDGv3 29
HC3 H181 -0.353 0.312 -2.702 ETKDGv3 30
HC3 H182 1.176 -0.515 -2.386 ETKDGv3 31
HC3 H183 -0.357 -1.407 -2.208 ETKDGv3 32
HC3 H121 0.472 1.773 0.706 ETKDGv3 33
HC3 H122 0.193 2.169 -1.010 ETKDGv3 34
HC3 H111 2.561 2.415 -0.342 ETKDGv3 35
HC3 H112 2.329 1.283 -1.694 ETKDGv3 36
HC3 H9 2.856 0.636 1.273 ETKDGv3 37
HC3 H191 5.798 -0.156 -1.863 ETKDGv3 38
HC3 H192 4.162 -0.828 -2.038 ETKDGv3 39
HC3 H193 4.453 0.940 -2.229 ETKDGv3 40
HC3 H11 4.852 2.416 -0.328 ETKDGv3 41
HC3 H12 4.838 1.835 1.362 ETKDGv3 42
HC3 H21 7.093 2.485 0.717 ETKDGv3 43
HC3 H22 7.076 1.413 -0.717 ETKDGv3 44
HC3 H3 6.860 0.551 2.246 ETKDGv3 45
HC3 HO1 8.929 0.204 0.295 ETKDGv3 46
HC3 H41 7.078 -1.242 -0.259 ETKDGv3 47
HC3 H42 6.985 -1.755 1.452 ETKDGv3 48
HC3 H6 4.952 -2.821 1.536 ETKDGv3 49
HC3 H71 2.630 -1.755 2.164 ETKDGv3 50
HC3 H72 2.597 -3.067 0.938 ETKDGv3 51
HC3 H8 2.404 -1.526 -0.889 ETKDGv3 52
HC3 H14 0.699 -0.497 1.452 ETKDGv3 53
HC3 H151 0.053 -2.733 1.425 ETKDGv3 54
HC3 H152 0.170 -2.863 -0.378 ETKDGv3 55
HC3 H161 -2.041 -2.242 -0.467 ETKDGv3 56
HC3 H162 -2.069 -1.809 1.289 ETKDGv3 57
HC3 H17 -1.533 0.413 0.934 ETKDGv3 58
HC3 H20 -2.594 -0.283 -1.887 ETKDGv3 59
HC3 H211 -1.724 1.972 -2.059 ETKDGv3 60
HC3 H212 -2.311 2.413 -0.401 ETKDGv3 61
HC3 H213 -3.442 2.181 -1.777 ETKDGv3 62
HC3 H221 -4.005 -0.979 0.184 ETKDGv3 63
HC3 H222 -4.123 0.762 0.582 ETKDGv3 64
HC3 H231 -5.408 1.191 -1.478 ETKDGv3 65
HC3 H232 -4.935 -0.385 -2.164 ETKDGv3 66
HC3 H241 -7.240 -0.479 -1.477 ETKDGv3 67
HC3 H242 -6.271 -1.607 -0.495 ETKDGv3 68
HC3 H261 -8.278 -1.690 1.049 ETKDGv3 69
HC3 H262 -9.139 -0.431 0.082 ETKDGv3 70
HC3 H263 -8.877 -0.194 1.848 ETKDGv3 71
HC3 H271 -6.338 2.154 0.425 ETKDGv3 72
HC3 H272 -7.880 1.825 -0.463 ETKDGv3 73
HC3 H273 -7.875 2.014 1.329 ETKDGv3 74
HC3 HO2 -6.585 0.266 2.514 ETKDGv3 75
#