data_HE3
#
_chem_comp.id HE3
_chem_comp.name "2-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H22 N4 O8 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
"2-{(9AS)-9A-[(1S)-1-HYDROXYETHYL]-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL}ETHYL TRIHYDROGEN DIPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-04-10
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 468.359
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HE3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1OZG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HE3 C9 C9 C 0 1 N N N N N N 124.263 5.856 16.939 -4.530 2.410 -2.173 C9 HE3 1
HE3 C8 C8 C 0 1 N N S N N N 124.146 5.543 18.428 -4.260 2.177 -0.685 C8 HE3 2
HE3 O9 O9 O 0 1 N N N N N N 123.683 4.122 18.123 -3.860 3.406 -0.075 O9 HE3 3
HE3 C2 C2 C 0 1 N N S N N N 123.354 6.566 19.321 -3.145 1.141 -0.525 C2 HE3 4
HE3 "N4'" "N4'" N 0 1 N N N N N N 123.513 5.821 20.741 -3.469 -0.153 -1.141 "N4'" HE3 5
HE3 "C4'" "C4'" C 0 1 Y N N N N N 122.135 5.534 21.370 -4.264 -1.044 -0.433 "C4'" HE3 6
HE3 "N3'" "N3'" N 0 1 Y N N N N N 122.226 5.415 22.804 -4.857 -2.042 -1.087 "N3'" HE3 7
HE3 "C2'" "C2'" C 0 1 Y N N N N N 121.066 5.155 23.568 -5.616 -2.908 -0.447 "C2'" HE3 8
HE3 CM2 CM2 C 0 1 N N N N N N 121.254 5.053 24.977 -6.270 -4.022 -1.222 CM2 HE3 9
HE3 "N1'" "N1'" N 0 1 Y N N N N N 119.802 5.022 22.833 -5.819 -2.827 0.853 "N1'" HE3 10
HE3 "C6'" "C6'" C 0 1 Y N N N N N 119.685 5.142 21.343 -5.264 -1.861 1.571 "C6'" HE3 11
HE3 "C5'" "C5'" C 0 1 Y N N N N N 120.888 5.410 20.538 -4.463 -0.929 0.939 "C5'" HE3 12
HE3 "C7'" "C7'" C 0 1 N N N N N N 120.921 5.557 19.016 -3.838 0.181 1.747 "C7'" HE3 13
HE3 N3 N3 N 0 1 N N N N N N 121.921 6.659 18.642 -2.817 0.835 0.899 N3 HE3 14
HE3 C4 C4 C 0 1 N N N N N N 121.645 8.140 18.986 -1.538 1.175 1.280 C4 HE3 15
HE3 CM4 CM4 C 0 1 N N N N N N 120.191 8.648 18.911 -1.148 1.005 2.726 CM4 HE3 16
HE3 C5 C5 C 0 1 N N N N N N 122.855 8.919 19.353 -0.637 1.645 0.435 C5 HE3 17
HE3 C6 C6 C 0 1 N N N N N N 122.763 10.304 19.686 0.791 2.035 0.719 C6 HE3 18
HE3 C7 C7 C 0 1 N N N N N N 122.918 11.327 18.641 1.714 0.857 0.401 C7 HE3 19
HE3 O7 O7 O 0 1 N N N N N N 122.816 12.707 18.955 3.068 1.226 0.671 O7 HE3 20
HE3 PA PA P 0 1 N N S N N N 123.624 13.753 19.567 3.978 -0.053 0.316 PA HE3 21
HE3 O2A O2A O 0 1 N N N N N N 122.798 14.921 19.524 3.623 -1.260 1.321 O2A HE3 22
HE3 O3A O3A O 0 1 N N N N N N 124.023 13.132 20.858 3.713 -0.477 -1.077 O3A HE3 23
HE3 O1A O1A O 0 1 N N N N N N 124.857 13.815 18.545 5.533 0.335 0.473 O1A HE3 24
HE3 PB PB P 0 1 N N N N N N 125.005 14.362 17.092 6.371 -0.747 -0.376 PB HE3 25
HE3 O1B O1B O 0 1 N N N N N N 126.059 15.323 17.249 6.329 -0.355 -1.936 O1B HE3 26
HE3 O2B O2B O 0 1 N N N N N N 125.345 13.169 16.242 7.898 -0.762 0.133 O2B HE3 27
HE3 O3B O3B O 0 1 N N N N N N 123.652 14.893 16.756 5.775 -2.089 -0.188 O3B HE3 28
HE3 S1 S1 S 0 1 N N N N N N 124.340 8.035 19.337 -1.520 1.724 -1.146 S1 HE3 29
HE3 H91 1H9 H 0 1 N N N N N N 123.383 5.696 16.273 -3.623 2.776 -2.654 H91 HE3 30
HE3 H92 2H9 H 0 1 N N N N N N 124.601 6.895 17.162 -4.835 1.473 -2.638 H92 HE3 31
HE3 H93 3H9 H 0 1 N N N N N N 124.889 5.202 16.288 -5.324 3.148 -2.287 H93 HE3 32
HE3 H8 H8 H 0 1 N N N N N N 125.001 5.632 19.139 -5.168 1.811 -0.204 H8 HE3 33
HE3 HO9 HO9 H 0 1 N N N N N N 123.610 3.927 19.050 -3.056 3.694 -0.529 HO9 HE3 34
HE3 "H4'" "H4'" H 0 1 N N N N N N 124.115 6.345 21.376 -3.134 -0.380 -2.023 "H4'" HE3 35
HE3 HM21 1HM2 H 0 0 N N N N N N 121.760 5.971 25.358 -5.607 -4.887 -1.244 HM21 HE3 36
HE3 HM22 2HM2 H 0 0 N N N N N N 120.339 4.848 25.580 -7.209 -4.296 -0.742 HM22 HE3 37
HE3 HM23 3HM2 H 0 0 N N N N N N 122.033 4.287 25.200 -6.466 -3.689 -2.242 HM23 HE3 38
HE3 "H6'" "H6'" H 0 1 N N N N N N 118.711 5.033 20.837 -5.435 -1.803 2.635 "H6'" HE3 39
HE3 "H7'1" "1H7'" H 0 0 N N N N N N 119.909 5.738 18.585 -4.601 0.905 2.033 "H7'1" HE3 40
HE3 "H7'2" "2H7'" H 0 0 N N N N N N 121.140 4.593 18.501 -3.367 -0.232 2.639 "H7'2" HE3 41
HE3 HM41 1HM4 H 0 0 N N N N N N 119.546 8.000 19.549 -0.740 0.005 2.877 HM41 HE3 42
HE3 HM42 2HM4 H 0 0 N N N N N N 119.992 9.717 19.159 -0.395 1.748 2.989 HM42 HE3 43
HE3 HM43 3HM4 H 0 0 N N N N N N 119.780 8.427 17.898 -2.026 1.138 3.357 HM43 HE3 44
HE3 H61 1H6 H 0 1 N N N N N N 123.494 10.519 20.500 1.065 2.889 0.099 H61 HE3 45
HE3 H62 2H6 H 0 1 N N N N N N 121.792 10.477 20.206 0.892 2.302 1.771 H62 HE3 46
HE3 H71 1H7 H 0 1 N N N N N N 122.193 11.102 17.824 1.440 0.003 1.021 H71 HE3 47
HE3 H72 2H7 H 0 1 N N N N N N 123.895 11.158 18.131 1.613 0.589 -0.650 H72 HE3 48
HE3 H2A H2A H 0 1 N N N N N N 123.325 15.603 19.923 3.810 -0.943 2.216 H2A HE3 49
HE3 H1B H1B H 0 1 N N N N N N 126.149 15.656 16.364 6.725 0.524 -2.014 H1B HE3 50
HE3 H2B H2B H 0 1 N N N N N N 125.435 13.502 15.357 8.363 -1.422 -0.399 H2B HE3 51
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HE3 C9 C8 SING N N 1
HE3 C9 H91 SING N N 2
HE3 C9 H92 SING N N 3
HE3 C9 H93 SING N N 4
HE3 C8 O9 SING N N 5
HE3 C8 C2 SING N N 6
HE3 C8 H8 SING N N 7
HE3 O9 HO9 SING N N 8
HE3 C2 "N4'" SING N N 9
HE3 C2 N3 SING N N 10
HE3 C2 S1 SING N N 11
HE3 "N4'" "C4'" SING N N 12
HE3 "N4'" "H4'" SING N N 13
HE3 "C4'" "N3'" DOUB Y N 14
HE3 "C4'" "C5'" SING Y N 15
HE3 "N3'" "C2'" SING Y N 16
HE3 "C2'" CM2 SING N N 17
HE3 "C2'" "N1'" DOUB Y N 18
HE3 CM2 HM21 SING N N 19
HE3 CM2 HM22 SING N N 20
HE3 CM2 HM23 SING N N 21
HE3 "N1'" "C6'" SING Y N 22
HE3 "C6'" "C5'" DOUB Y N 23
HE3 "C6'" "H6'" SING N N 24
HE3 "C5'" "C7'" SING N N 25
HE3 "C7'" N3 SING N N 26
HE3 "C7'" "H7'1" SING N N 27
HE3 "C7'" "H7'2" SING N N 28
HE3 N3 C4 SING N N 29
HE3 C4 CM4 SING N N 30
HE3 C4 C5 DOUB N N 31
HE3 CM4 HM41 SING N N 32
HE3 CM4 HM42 SING N N 33
HE3 CM4 HM43 SING N N 34
HE3 C5 C6 SING N N 35
HE3 C5 S1 SING N N 36
HE3 C6 C7 SING N N 37
HE3 C6 H61 SING N N 38
HE3 C6 H62 SING N N 39
HE3 C7 O7 SING N N 40
HE3 C7 H71 SING N N 41
HE3 C7 H72 SING N N 42
HE3 O7 PA SING N N 43
HE3 PA O2A SING N N 44
HE3 PA O3A DOUB N N 45
HE3 PA O1A SING N N 46
HE3 O2A H2A SING N N 47
HE3 O1A PB SING N N 48
HE3 PB O1B SING N N 49
HE3 PB O2B SING N N 50
HE3 PB O3B DOUB N N 51
HE3 O1B H1B SING N N 52
HE3 O2B H2B SING N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HE3 SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OCCC=2SC3(Nc1nc(ncc1CN3C=2C)C)C(O)C
HE3 SMILES_CANONICAL CACTVS 3.341 C[C@H](O)[C@]12Nc3nc(C)ncc3CN1C(=C(CCO[P@@](O)(=O)O[P](O)(O)=O)S2)C
HE3 SMILES CACTVS 3.341 C[CH](O)[C]12Nc3nc(C)ncc3CN1C(=C(CCO[P](O)(=O)O[P](O)(O)=O)S2)C
HE3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1ncc2c(n1)N[C@]3([N@@](C2)C(=C(S3)CCO[P@](=O)(O)OP(=O)(O)O)C)[C@H](C)O
HE3 SMILES "OpenEye OEToolkits" 1.5.0 Cc1ncc2c(n1)NC3(N(C2)C(=C(S3)CCOP(=O)(O)OP(=O)(O)O)C)C(C)O
HE3 InChI InChI 1.03 InChI=1S/C14H22N4O8P2S/c1-8-12(4-5-25-28(23,24)26-27(20,21)22)29-14(9(2)19)17-13-11(7-18(8)14)6-15-10(3)16-13/h6,9,19H,4-5,7H2,1-3H3,(H,23,24)(H,15,16,17)(H2,20,21,22)/t9-,14-/m0/s1
HE3 InChIKey InChI 1.03 UQFVHIGKDHNMJT-XPTSAGLGSA-N
#
_pdbx_chem_comp_identifier.comp_id HE3
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
"2-{(9aS)-9a-[(1S)-1-hydroxyethyl]-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl}ethyl trihydrogen diphosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HE3 'Create component' 2003-04-10 RCSB
HE3 'Modify descriptor' 2011-06-04 RCSB
HE3 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HE3
_pdbx_chem_comp_synonyms.name
"2-{(9AS)-9A-[(1S)-1-HYDROXYETHYL]-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL}ETHYL TRIHYDROGEN DIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id HE3
_pdbe_chem_comp_drugbank_details.drugbank_id DB03361
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'2-{(9as)-9a-[(1s)-1-Hydroxyethyl]-2,7-Dimethyl-9a,10-Dihydro-5h-Pyrimido[4,5-D][1,3]Thiazolo[3,2-a]Pyrimidin-8-Yl}Ethyl Trihydrogen Diphosphate'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id HE3
_pdbe_chem_comp_synonyms.name
'2-{(9AS)-9A-[(1S)-1-HYDROXYETHYL]-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL}ETHYL TRIHYDROGEN DIPHOSPHATE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id HE3
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03361
_pdbe_chem_comp_drugbank_classification.parent 'Organic pyrophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organic oxoanionic compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as organic pyrophosphates. These are organic compounds containing the pyrophosphate oxoanion, with the structure OP([O-])(=O)OP(O)([O-])=O.'
#
_pdbe_chem_comp_drugbank_targets.comp_id HE3
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03361
_pdbe_chem_comp_drugbank_targets.name 'Acetolactate synthase, catabolic'
_pdbe_chem_comp_drugbank_targets.organism 'Klebsiella pneumoniae'
_pdbe_chem_comp_drugbank_targets.uniprot_id P27696
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HE3 C9 C 10.893 3.966 1
HE3 C8 C 9.594 3.216 2
HE3 O9 O 8.844 4.515 3
HE3 C2 C 9.594 1.716 4
HE3 "N4'" N 8.295 2.466 5
HE3 "C4'" C 6.996 1.716 6
HE3 "N3'" N 5.655 2.518 7
HE3 "C2'" C 4.296 1.747 8
HE3 CM2 C 3.000 2.502 9
HE3 "N1'" N 4.296 0.185 10
HE3 "C6'" C 5.655 -0.586 11
HE3 "C5'" C 6.996 0.216 12
HE3 "C7'" C 8.295 -0.534 13
HE3 N3 N 9.594 0.216 14
HE3 C4 C 11.014 -0.241 15
HE3 CM4 C 11.479 -1.667 16
HE3 C5 C 11.889 0.966 17
HE3 C6 C 13.389 0.966 18
HE3 C7 C 14.139 -0.333 19
HE3 O7 O 15.639 -0.333 20
HE3 PA P 16.389 -1.632 21
HE3 O2A O 17.688 -0.882 22
HE3 O3A O 15.090 -2.382 23
HE3 O1A O 17.139 -2.931 24
HE3 PB P 18.639 -2.931 25
HE3 O1B O 20.139 -2.931 26
HE3 O2B O 18.639 -4.431 27
HE3 O3B O 18.639 -1.431 28
HE3 S1 S 11.014 2.173 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HE3 C8 C9 SINGLE BEGINWEDGE 1
HE3 C8 O9 SINGLE NONE 2
HE3 C8 C2 SINGLE NONE 3
HE3 C2 "N4'" SINGLE BEGINDASH 4
HE3 C2 N3 SINGLE NONE 5
HE3 C2 S1 SINGLE NONE 6
HE3 "N4'" "C4'" SINGLE NONE 7
HE3 "C4'" "N3'" DOUBLE NONE 8
HE3 "C4'" "C5'" SINGLE NONE 9
HE3 "N3'" "C2'" SINGLE NONE 10
HE3 "C2'" CM2 SINGLE NONE 11
HE3 "C2'" "N1'" DOUBLE NONE 12
HE3 "N1'" "C6'" SINGLE NONE 13
HE3 "C6'" "C5'" DOUBLE NONE 14
HE3 "C5'" "C7'" SINGLE NONE 15
HE3 "C7'" N3 SINGLE NONE 16
HE3 N3 C4 SINGLE NONE 17
HE3 C4 CM4 SINGLE NONE 18
HE3 C4 C5 DOUBLE NONE 19
HE3 C5 C6 SINGLE NONE 20
HE3 C5 S1 SINGLE NONE 21
HE3 C6 C7 SINGLE NONE 22
HE3 C7 O7 SINGLE NONE 23
HE3 O7 PA SINGLE NONE 24
HE3 PA O2A SINGLE BEGINWEDGE 25
HE3 PA O3A DOUBLE NONE 26
HE3 PA O1A SINGLE NONE 27
HE3 O1A PB SINGLE NONE 28
HE3 PB O1B SINGLE NONE 29
HE3 PB O2B SINGLE NONE 30
HE3 PB O3B DOUBLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HE3 MurckoScaffold S1 scaffold C1=CN2Cc3cncnc3NC2S1 InChI=1S/C8H8N4S/c1-2-13-8-11-7-6(4-12(1)8)3-9-5-10-7/h1-3,5,8H,4H2,(H,9,10,11) PSUZHPIMZMRZEJ-UHFFFAOYSA-N
HE3 phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
HE3 pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HE3 C2 S1 1
HE3 "N4'" S1 1
HE3 "C4'" S1 1
HE3 "N3'" S1 1
HE3 "C2'" S1 1
HE3 "N1'" S1 1
HE3 "C6'" S1 1
HE3 "C5'" S1 1
HE3 "C7'" S1 1
HE3 N3 S1 1
HE3 C4 S1 1
HE3 C5 S1 1
HE3 S1 S1 1
HE3 O7 F1 1
HE3 PA F1 1
HE3 O3A F1 1
HE3 O2A F1 1
HE3 O1A F1 1
HE3 O1A F1 2
HE3 PB F1 2
HE3 O3B F1 2
HE3 O1B F1 2
HE3 O2B F1 2
HE3 "C5'" F2 1
HE3 "C4'" F2 1
HE3 "N3'" F2 1
HE3 "C2'" F2 1
HE3 "N1'" F2 1
HE3 "C6'" F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HE3
_pdbe_chem_comp_rdkit_properties.exactmw 468.063
_pdbe_chem_comp_rdkit_properties.amw 468.365
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 51
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 202.069
_pdbe_chem_comp_rdkit_properties.tpsa 174.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.152
_pdbe_chem_comp_rdkit_properties.CrippenMR 102.805
_pdbe_chem_comp_rdkit_properties.chi0v 15.963
_pdbe_chem_comp_rdkit_properties.chi1v 10.527
_pdbe_chem_comp_rdkit_properties.chi2v 6.152
_pdbe_chem_comp_rdkit_properties.chi3v 6.152
_pdbe_chem_comp_rdkit_properties.chi4v 4.282
_pdbe_chem_comp_rdkit_properties.chi0n 35.358
_pdbe_chem_comp_rdkit_properties.chi1n 17.370
_pdbe_chem_comp_rdkit_properties.chi2n 2.994
_pdbe_chem_comp_rdkit_properties.chi3n 2.994
_pdbe_chem_comp_rdkit_properties.chi4n 1.993
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.010
_pdbe_chem_comp_rdkit_properties.kappa1 7.543
_pdbe_chem_comp_rdkit_properties.kappa2 7.916
_pdbe_chem_comp_rdkit_properties.kappa3 4.844
_pdbe_chem_comp_rdkit_properties.Phi 2.059
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HE3 UniChem DrugBank DB03361
HE3 UniChem PDBe HE3
HE3 UniChem ChEBI 43195
HE3 UniChem ZINC ZINC000012503512
HE3 UniChem SureChEMBL SCHEMBL4329229
HE3 UniChem PubChem 447750
HE3 UniChem 'Probes And Drugs' PD059670
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HE3 C9 -2.883 -2.461 1.456 ETKDGv3 1
HE3 C8 -1.868 -1.536 2.133 ETKDGv3 2
HE3 O9 -2.395 -1.143 3.377 ETKDGv3 3
HE3 C2 -1.510 -0.280 1.287 ETKDGv3 4
HE3 "N4'" -2.677 0.589 1.117 ETKDGv3 5
HE3 "C4'" -3.503 0.515 -0.043 ETKDGv3 6
HE3 "N3'" -4.670 1.091 -0.051 ETKDGv3 7
HE3 "C2'" -5.534 0.996 -1.196 ETKDGv3 8
HE3 CM2 -6.886 1.625 -1.164 ETKDGv3 9
HE3 "N1'" -5.161 0.302 -2.233 ETKDGv3 10
HE3 "C6'" -3.877 -0.341 -2.270 ETKDGv3 11
HE3 "C5'" -3.051 -0.249 -1.218 ETKDGv3 12
HE3 "C7'" -1.678 -0.856 -1.262 ETKDGv3 13
HE3 N3 -0.927 -0.659 -0.010 ETKDGv3 14
HE3 C4 0.502 -0.673 0.019 ETKDGv3 15
HE3 CM4 1.312 -1.314 -1.078 ETKDGv3 16
HE3 C5 1.024 -0.050 1.076 ETKDGv3 17
HE3 C6 2.490 0.058 1.399 ETKDGv3 18
HE3 C7 3.185 1.087 0.508 ETKDGv3 19
HE3 O7 4.557 1.107 0.823 ETKDGv3 20
HE3 PA 5.337 2.177 -0.253 ETKDGv3 21
HE3 O2A 4.727 3.739 -0.026 ETKDGv3 22
HE3 O3A 6.820 2.193 0.047 ETKDGv3 23
HE3 O1A 5.064 1.722 -1.873 ETKDGv3 24
HE3 PB 5.814 0.214 -2.133 ETKDGv3 25
HE3 O1B 5.363 -0.348 -3.662 ETKDGv3 26
HE3 O2B 5.326 -0.929 -0.980 ETKDGv3 27
HE3 O3B 7.319 0.371 -2.102 ETKDGv3 28
HE3 S1 -0.203 0.661 2.165 ETKDGv3 29
HE3 H91 -3.827 -1.923 1.230 ETKDGv3 30
HE3 H92 -2.464 -2.892 0.525 ETKDGv3 31
HE3 H93 -3.123 -3.306 2.135 ETKDGv3 32
HE3 H8 -0.940 -2.138 2.285 ETKDGv3 33
HE3 HO9 -1.635 -1.070 4.011 ETKDGv3 34
HE3 "H4'" -3.017 1.141 1.938 ETKDGv3 35
HE3 HM21 -7.159 2.001 -2.173 ETKDGv3 36
HE3 HM22 -6.892 2.478 -0.453 ETKDGv3 37
HE3 HM23 -7.635 0.875 -0.838 ETKDGv3 38
HE3 "H6'" -3.582 -0.885 -3.158 ETKDGv3 39
HE3 "H7'1" -1.128 -0.369 -2.096 ETKDGv3 40
HE3 "H7'2" -1.749 -1.941 -1.487 ETKDGv3 41
HE3 HM41 1.500 -0.574 -1.883 ETKDGv3 42
HE3 HM42 2.281 -1.705 -0.707 ETKDGv3 43
HE3 HM43 0.758 -2.174 -1.506 ETKDGv3 44
HE3 H61 2.604 0.379 2.457 ETKDGv3 45
HE3 H62 2.982 -0.934 1.310 ETKDGv3 46
HE3 H71 3.028 0.804 -0.555 ETKDGv3 47
HE3 H72 2.728 2.085 0.697 ETKDGv3 48
HE3 H2A 4.835 3.914 0.943 ETKDGv3 49
HE3 H1B 4.377 -0.436 -3.616 ETKDGv3 50
HE3 H2B 6.045 -0.939 -0.299 ETKDGv3 51
#