data_HGS
#
_chem_comp.id HGS
_chem_comp.name D-gamma-glutamyl-L-cysteinyl-beta-alanine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H19 N3 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-11-17
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 321.350
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HGS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3KAL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HGS C1 C1 C 0 1 N N N N N N -24.716 -27.092 14.119 -6.376 0.774 0.470 C1 HGS 1
HGS N1 N1 N 0 1 N N N N N N -24.851 -29.571 13.085 -5.385 0.529 -1.735 N1 HGS 2
HGS C2 C2 C 0 1 N N N N N N -21.010 -23.401 10.414 2.139 0.280 -0.207 C2 HGS 3
HGS N2 N2 N 0 1 N N N N N N -22.187 -25.631 10.129 -0.270 0.180 -0.475 N2 HGS 4
HGS O2 O2 O 0 1 N N N N N N -21.670 -22.416 9.917 2.070 1.299 -0.861 O2 HGS 5
HGS N3 N3 N 0 1 N N N N N N -20.141 -23.160 11.533 3.335 -0.158 0.234 N3 HGS 6
HGS C4 C4 C 0 1 N N N N N N -16.978 -25.399 13.815 7.013 0.666 0.218 C4 HGS 7
HGS O11 O11 O 0 1 N N N N N N -25.644 -26.492 13.594 -7.172 -0.072 0.136 O11 HGS 8
HGS O12 O12 O 0 1 N N N N N N -24.058 -26.701 15.166 -6.575 1.474 1.598 O12 HGS 9
HGS O41 O41 O 0 1 N N N N N N -15.928 -24.475 13.616 8.204 0.231 0.658 O41 HGS 10
HGS O42 O42 O 0 1 N N N N N N -17.186 -26.465 14.642 6.944 1.682 -0.434 O42 HGS 11
HGS CA1 CA1 C 0 1 N N R N N N -24.325 -28.208 13.138 -5.157 1.038 -0.376 CA1 HGS 12
HGS CA2 CA2 C 0 1 N N R N N N -21.338 -24.632 9.467 0.888 -0.497 0.112 CA2 HGS 13
HGS CA3 CA3 C 0 1 N N N N N N -19.060 -23.560 12.656 4.552 0.597 -0.076 CA3 HGS 14
HGS CA4 CA4 C 0 1 N N N N N N -18.379 -25.015 12.956 5.762 -0.110 0.537 CA4 HGS 15
HGS CB1 CB1 C 0 1 N N N N N N -22.841 -28.045 12.800 -3.947 0.331 0.238 CB1 HGS 16
HGS CB2 CB2 C 0 1 N N N N N N -21.958 -24.288 7.995 1.002 -1.908 -0.467 CB2 HGS 17
HGS CD1 CD1 C 0 1 N N N N N N -21.814 -26.445 11.013 -1.496 0.003 0.056 CD1 HGS 18
HGS OE1 OE1 O 0 1 N N N N N N -20.595 -26.704 11.534 -1.640 -0.718 1.021 OE1 HGS 19
HGS CG1 CG1 C 0 1 N N N N N N -22.978 -27.219 11.475 -2.688 0.699 -0.548 CG1 HGS 20
HGS SG2 SG2 S 0 1 N N N N N N -22.540 -25.996 7.623 -0.504 -2.843 -0.083 SG2 HGS 21
HGS HN1 HN1 H 0 1 N N N N N N -24.408 -30.071 12.340 -5.562 -0.465 -1.724 HN1 HGS 22
HGS HN1A HN1A H 0 0 N N N N N N -24.667 -30.033 13.952 -6.138 1.025 -2.185 HN1A HGS 23
HGS HN2 HN2 H 0 1 N N N N N N -23.147 -25.668 9.852 -0.155 0.757 -1.247 HN2 HGS 24
HGS HN3 HN3 H 0 1 N N N N N N -20.297 -22.190 11.721 3.391 -0.973 0.757 HN3 HGS 25
HGS HA1 HA1 H 0 1 N N N N N N -25.061 -28.002 12.347 -4.969 2.111 -0.416 HA1 HGS 26
HGS HA2 HA2 H 0 1 N N N N N N -20.335 -25.040 9.272 0.764 -0.557 1.194 HA2 HGS 27
HGS HA3 HA3 H 0 1 N N N N N N -18.198 -22.919 12.420 4.676 0.657 -1.158 HA3 HGS 28
HGS HA3A HA3A H 0 0 N N N N N N -19.571 -23.318 13.600 4.471 1.603 0.337 HA3A HGS 29
HGS HA4 HA4 H 0 1 N N N N N N -18.170 -25.406 11.949 5.843 -1.116 0.124 HA4 HGS 30
HGS HA4A HA4A H 0 0 N N N N N N -19.166 -25.550 13.508 5.637 -0.170 1.619 HA4A HGS 31
HGS HB1 HB1 H 0 1 N N N N N N -22.276 -27.516 13.582 -3.832 0.643 1.276 HB1 HGS 32
HGS HB1A HB1A H 0 0 N N N N N N -22.323 -29.005 12.658 -4.098 -0.748 0.198 HB1A HGS 33
HGS HB2 HB2 H 0 1 N N N N N N -22.757 -23.532 8.008 1.126 -1.848 -1.549 HB2 HGS 34
HGS HB2A HB2A H 0 0 N N N N N N -21.223 -23.896 7.277 1.864 -2.412 -0.030 HB2A HGS 35
HGS HG1 HG1 H 0 1 N N N N N N -23.214 -27.939 10.678 -2.803 0.387 -1.586 HG1 HGS 36
HGS HG1A HG1A H 0 0 N N N N N N -23.792 -26.497 11.636 -2.537 1.778 -0.508 HG1A HGS 37
HGS HSG2 HSG2 H 0 0 N N N N N N -23.068 -25.851 6.444 -0.267 -4.043 -0.644 HSG2 HGS 38
HGS H18 H18 H 0 1 N N N N N N -24.407 -25.871 15.468 -7.369 1.266 2.110 H18 HGS 39
HGS H19 H19 H 0 1 N N N N N N -15.216 -24.670 14.214 8.978 0.762 0.428 H19 HGS 40
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HGS C1 O11 DOUB N N 1
HGS C1 O12 SING N N 2
HGS C1 CA1 SING N N 3
HGS N1 CA1 SING N N 4
HGS N1 HN1 SING N N 5
HGS N1 HN1A SING N N 6
HGS C2 O2 DOUB N N 7
HGS C2 N3 SING N N 8
HGS C2 CA2 SING N N 9
HGS N2 CA2 SING N N 10
HGS N2 CD1 SING N N 11
HGS N2 HN2 SING N N 12
HGS N3 CA3 SING N N 13
HGS N3 HN3 SING N N 14
HGS C4 O41 SING N N 15
HGS C4 O42 DOUB N N 16
HGS C4 CA4 SING N N 17
HGS CA1 CB1 SING N N 18
HGS CA1 HA1 SING N N 19
HGS CA2 CB2 SING N N 20
HGS CA2 HA2 SING N N 21
HGS CA3 CA4 SING N N 22
HGS CA3 HA3 SING N N 23
HGS CA3 HA3A SING N N 24
HGS CA4 HA4 SING N N 25
HGS CA4 HA4A SING N N 26
HGS CB1 CG1 SING N N 27
HGS CB1 HB1 SING N N 28
HGS CB1 HB1A SING N N 29
HGS CB2 SG2 SING N N 30
HGS CB2 HB2 SING N N 31
HGS CB2 HB2A SING N N 32
HGS CD1 OE1 DOUB N N 33
HGS CD1 CG1 SING N N 34
HGS CG1 HG1 SING N N 35
HGS CG1 HG1A SING N N 36
HGS SG2 HSG2 SING N N 37
HGS O12 H18 SING N N 38
HGS O41 H19 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HGS SMILES_CANONICAL CACTVS 3.352 N[C@H](CCC(=O)N[C@@H](CS)C(=O)NCCC(O)=O)C(O)=O
HGS SMILES CACTVS 3.352 N[CH](CCC(=O)N[CH](CS)C(=O)NCCC(O)=O)C(O)=O
HGS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C(CC(=O)N[C@@H](CS)C(=O)NCCC(=O)O)[C@H](C(=O)O)N
HGS SMILES "OpenEye OEToolkits" 1.7.0 C(CC(=O)NC(CS)C(=O)NCCC(=O)O)C(C(=O)O)N
HGS InChI InChI 1.03 InChI=1S/C11H19N3O6S/c12-6(11(19)20)1-2-8(15)14-7(5-21)10(18)13-4-3-9(16)17/h6-7,21H,1-5,12H2,(H,13,18)(H,14,15)(H,16,17)(H,19,20)/t6-,7+/m1/s1
HGS InChIKey InChI 1.03 HKBNQXMLSMKLJV-RQJHMYQMSA-N
#
_pdbx_chem_comp_identifier.comp_id HGS
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier
"(2R)-2-azanyl-5-[[(2R)-1-(2-carboxyethylamino)-1-oxo-3-sulfanyl-propan-2-yl]amino]-5-oxo-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HGS 'Create component' 2009-11-17 RCSB
HGS 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HGS C1 C 5.104 0.233 1
HGS N1 N 6.404 2.482 2
HGS C2 C 14.198 0.983 3
HGS N2 N 11.600 0.983 4
HGS O2 O 14.198 2.482 5
HGS N3 N 15.497 0.233 6
HGS C4 C 19.394 0.983 7
HGS O11 O 3.805 0.983 8
HGS O12 O 5.104 -1.268 9
HGS O41 O 20.693 0.233 10
HGS O42 O 19.394 2.482 11
HGS CA1 C 6.404 0.983 12
HGS CA2 C 12.899 0.233 13
HGS CA3 C 16.796 0.983 14
HGS CA4 C 18.095 0.233 15
HGS CB1 C 7.702 0.233 16
HGS CB2 C 12.899 -1.268 17
HGS CD1 C 10.301 0.233 18
HGS OE1 O 10.301 -1.268 19
HGS CG1 C 9.002 0.983 20
HGS SG2 S 11.600 -2.018 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HGS C1 O11 DOUBLE NONE 1
HGS C1 O12 SINGLE NONE 2
HGS C1 CA1 SINGLE NONE 3
HGS CA1 N1 SINGLE BEGINDASH 4
HGS C2 O2 DOUBLE NONE 5
HGS C2 N3 SINGLE NONE 6
HGS C2 CA2 SINGLE NONE 7
HGS N2 CA2 SINGLE NONE 8
HGS N2 CD1 SINGLE NONE 9
HGS N3 CA3 SINGLE NONE 10
HGS C4 O41 SINGLE NONE 11
HGS C4 O42 DOUBLE NONE 12
HGS C4 CA4 SINGLE NONE 13
HGS CA1 CB1 SINGLE NONE 14
HGS CA2 CB2 SINGLE BEGINDASH 15
HGS CA3 CA4 SINGLE NONE 16
HGS CB1 CG1 SINGLE NONE 17
HGS CB2 SG2 SINGLE NONE 18
HGS CD1 OE1 DOUBLE NONE 19
HGS CD1 CG1 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HGS amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HGS peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HGS N2 F1 1
HGS CD1 F1 1
HGS OE1 F1 1
HGS CG1 F1 1
HGS N3 F1 2
HGS C2 F1 2
HGS O2 F1 2
HGS CA2 F1 2
HGS O2 F2 1
HGS C2 F2 1
HGS CA2 F2 1
HGS N2 F2 1
HGS O11 F2 2
HGS C1 F2 2
HGS CA1 F2 2
HGS N1 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id HGS
_pdbe_chem_comp_rdkit_properties.exactmw 321.099
_pdbe_chem_comp_rdkit_properties.amw 321.355
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 40
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.636
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 152.999
_pdbe_chem_comp_rdkit_properties.tpsa 158.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.816
_pdbe_chem_comp_rdkit_properties.CrippenMR 75.891
_pdbe_chem_comp_rdkit_properties.chi0v 10.516
_pdbe_chem_comp_rdkit_properties.chi1v 4.955
_pdbe_chem_comp_rdkit_properties.chi2v 1.503
_pdbe_chem_comp_rdkit_properties.chi3v 1.503
_pdbe_chem_comp_rdkit_properties.chi4v 0.718
_pdbe_chem_comp_rdkit_properties.chi0n 28.699
_pdbe_chem_comp_rdkit_properties.chi1n 13.561
_pdbe_chem_comp_rdkit_properties.chi2n 1.309
_pdbe_chem_comp_rdkit_properties.chi3n 1.309
_pdbe_chem_comp_rdkit_properties.chi4n 0.585
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.810
_pdbe_chem_comp_rdkit_properties.kappa1 4.591
_pdbe_chem_comp_rdkit_properties.kappa2 9.995
_pdbe_chem_comp_rdkit_properties.kappa3 8.866
_pdbe_chem_comp_rdkit_properties.Phi 2.185
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HGS UniChem PDBe HGS
HGS UniChem ZINC ZINC000006292519
HGS UniChem PubChem 44517647
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HGS C1 -4.645 0.476 1.855 ETKDGv3 1
HGS N1 -5.568 -0.806 0.018 ETKDGv3 2
HGS C2 2.327 -0.811 -0.685 ETKDGv3 3
HGS N2 -0.086 -0.860 -0.974 ETKDGv3 4
HGS O2 3.180 -1.386 0.045 ETKDGv3 5
HGS N3 2.481 0.576 -1.022 ETKDGv3 6
HGS C4 4.286 2.631 1.577 ETKDGv3 7
HGS O11 -4.830 -0.360 2.781 ETKDGv3 8
HGS O12 -4.626 1.837 2.145 ETKDGv3 9
HGS O41 5.419 2.064 2.152 ETKDGv3 10
HGS O42 4.176 3.884 1.505 ETKDGv3 11
HGS CA1 -4.429 0.010 0.442 ETKDGv3 12
HGS CA2 1.157 -1.599 -1.215 ETKDGv3 13
HGS CA3 3.539 1.409 -0.454 ETKDGv3 14
HGS CA4 3.223 1.751 1.003 ETKDGv3 15
HGS CB1 -3.105 -0.774 0.302 ETKDGv3 16
HGS CB2 1.326 -1.887 -2.716 ETKDGv3 17
HGS CD1 -0.617 -0.670 0.346 ETKDGv3 18
HGS OE1 -0.048 -1.191 1.343 ETKDGv3 19
HGS CG1 -1.878 0.115 0.543 ETKDGv3 20
HGS SG2 2.762 -2.965 -3.035 ETKDGv3 21
HGS HN1 -5.474 -1.006 -1.005 ETKDGv3 22
HGS HN1A -5.545 -1.726 0.517 ETKDGv3 23
HGS HN2 -0.606 -0.447 -1.781 ETKDGv3 24
HGS HN3 1.828 1.007 -1.714 ETKDGv3 25
HGS HA1 -4.382 0.905 -0.218 ETKDGv3 26
HGS HA2 1.094 -2.575 -0.683 ETKDGv3 27
HGS HA3 4.514 0.880 -0.529 ETKDGv3 28
HGS HA3A 3.612 2.350 -1.042 ETKDGv3 29
HGS HA4 3.159 0.821 1.608 ETKDGv3 30
HGS HA4A 2.239 2.267 1.060 ETKDGv3 31
HGS HB1 -3.094 -1.628 1.016 ETKDGv3 32
HGS HB1A -3.045 -1.192 -0.727 ETKDGv3 33
HGS HB2 1.456 -0.939 -3.281 ETKDGv3 34
HGS HB2A 0.417 -2.396 -3.101 ETKDGv3 35
HGS HG1 -1.898 0.522 1.577 ETKDGv3 36
HGS HG1A -1.888 0.973 -0.164 ETKDGv3 37
HGS HSG2 2.175 -4.072 -2.392 ETKDGv3 38
HGS H18 -4.763 2.168 3.092 ETKDGv3 39
HGS H19 6.157 2.646 2.530 ETKDGv3 40
#