data_HH4
#
_chem_comp.id HH4
_chem_comp.name "4-(4-tert-butylphenyl)-4-oxobutanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H18 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-07-02
_chem_comp.pdbx_modified_date 2018-07-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 234.291
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HH4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6DXH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HH4 C4 C1 C 0 1 Y N N N N N 6.705 23.110 7.449 -2.730 0.065 -0.004 C4 HH4 1
HH4 C2 C2 C 0 1 N N N N N N 8.891 22.313 6.403 -4.856 -0.149 1.255 C2 HH4 2
HH4 C3 C3 C 0 1 N N N N N N 7.779 24.377 5.588 -4.343 1.949 -0.001 C3 HH4 3
HH4 C1 C4 C 0 1 N N N N N N 8.043 23.512 6.820 -4.193 0.426 0.002 C1 HH4 4
HH4 C7 C5 C 0 1 Y N N N N N 4.384 22.582 8.932 -0.041 -0.599 -0.002 C7 HH4 5
HH4 C6 C6 C 0 1 Y N N N N N 4.613 23.844 8.401 -1.013 -1.604 -0.002 C6 HH4 6
HH4 C8 C7 C 0 1 Y N N N N N 5.293 21.564 8.655 -0.434 0.744 -0.004 C8 HH4 7
HH4 C12 C8 C 0 1 N N N N N N 1.759 21.107 11.408 3.826 -0.496 0.001 C12 HH4 8
HH4 C13 C9 C 0 1 N N N N N N 0.431 21.202 10.690 4.870 0.590 0.001 C13 HH4 9
HH4 C9 C10 C 0 1 Y N N N N N 6.433 21.823 7.909 -1.774 1.066 -0.004 C9 HH4 10
HH4 C5 C11 C 0 1 Y N N N N N 5.762 24.106 7.685 -2.350 -1.265 -0.003 C5 HH4 11
HH4 C11 C12 C 0 1 N N N N N N 2.961 21.084 10.474 2.432 0.135 -0.001 C11 HH4 12
HH4 O1 O1 O 0 1 N N N N N N 0.331 20.818 9.473 4.534 1.751 -0.001 O1 HH4 13
HH4 O2 O2 O 0 1 N N N N N N 2.401 23.324 9.961 1.725 -2.116 0.001 O2 HH4 14
HH4 C10 C13 C 0 1 N N N N N N 3.193 22.412 9.810 1.388 -0.951 -0.001 C10 HH4 15
HH4 O O3 O 0 1 N N N N N N -0.508 21.653 11.369 6.173 0.269 0.003 O HH4 16
HH4 C C14 C 0 1 N N N N N N 8.815 24.377 7.833 -4.867 -0.154 -1.244 C HH4 17
HH4 H1 H1 H 0 1 N N N N N N 9.089 21.680 7.281 -5.914 0.112 1.259 H1 HH4 18
HH4 H2 H2 H 0 1 N N N N N N 8.351 21.728 5.644 -4.749 -1.234 1.257 H2 HH4 19
HH4 H3 H3 H 0 1 N N N N N N 9.844 22.667 5.983 -4.376 0.264 2.142 H3 HH4 20
HH4 H4 H4 H 0 1 N N N N N N 7.168 25.246 5.874 -3.863 2.363 0.886 H4 HH4 21
HH4 H5 H5 H 0 1 N N N N N N 8.736 24.723 5.171 -3.871 2.359 -0.894 H5 HH4 22
HH4 H6 H6 H 0 1 N N N N N N 7.243 23.784 4.832 -5.401 2.210 0.003 H6 HH4 23
HH4 H7 H7 H 0 1 N N N N N N 3.885 24.628 8.550 -0.717 -2.643 -0.001 H7 HH4 24
HH4 H8 H8 H 0 1 N N N N N N 5.109 20.566 9.024 0.311 1.526 -0.004 H8 HH4 25
HH4 H9 H9 H 0 1 N N N N N N 1.766 20.183 12.005 3.945 -1.115 -0.888 H9 HH4 26
HH4 H10 H10 H 0 1 N N N N N N 1.855 21.976 12.076 3.944 -1.113 0.892 H10 HH4 27
HH4 H11 H11 H 0 1 N N N N N N 7.117 21.019 7.682 -2.079 2.102 -0.005 H11 HH4 28
HH4 H12 H12 H 0 1 N N N N N N 5.933 25.101 7.301 -3.102 -2.041 -0.002 H12 HH4 29
HH4 H13 H13 H 0 1 N N N N N N 2.790 20.325 9.697 2.313 0.754 0.888 H13 HH4 30
HH4 H14 H14 H 0 1 N N N N N N 3.856 20.818 11.056 2.314 0.752 -0.892 H14 HH4 31
HH4 H15 H15 H 0 1 N N N N N N -1.300 21.666 10.845 6.806 1.000 0.002 H15 HH4 32
HH4 H16 H16 H 0 1 N N N N N N 9.024 23.786 8.737 -5.925 0.107 -1.240 H16 HH4 33
HH4 H17 H17 H 0 1 N N N N N N 9.763 24.708 7.385 -4.394 0.256 -2.136 H17 HH4 34
HH4 H18 H18 H 0 1 N N N N N N 8.210 25.255 8.101 -4.760 -1.239 -1.242 H18 HH4 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HH4 C3 C1 SING N N 1
HH4 C2 C1 SING N N 2
HH4 C1 C4 SING N N 3
HH4 C1 C SING N N 4
HH4 C4 C5 DOUB Y N 5
HH4 C4 C9 SING Y N 6
HH4 C5 C6 SING Y N 7
HH4 C9 C8 DOUB Y N 8
HH4 C6 C7 DOUB Y N 9
HH4 C8 C7 SING Y N 10
HH4 C7 C10 SING N N 11
HH4 O1 C13 DOUB N N 12
HH4 C10 O2 DOUB N N 13
HH4 C10 C11 SING N N 14
HH4 C11 C12 SING N N 15
HH4 C13 O SING N N 16
HH4 C13 C12 SING N N 17
HH4 C2 H1 SING N N 18
HH4 C2 H2 SING N N 19
HH4 C2 H3 SING N N 20
HH4 C3 H4 SING N N 21
HH4 C3 H5 SING N N 22
HH4 C3 H6 SING N N 23
HH4 C6 H7 SING N N 24
HH4 C8 H8 SING N N 25
HH4 C12 H9 SING N N 26
HH4 C12 H10 SING N N 27
HH4 C9 H11 SING N N 28
HH4 C5 H12 SING N N 29
HH4 C11 H13 SING N N 30
HH4 C11 H14 SING N N 31
HH4 O H15 SING N N 32
HH4 C H16 SING N N 33
HH4 C H17 SING N N 34
HH4 C H18 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HH4 SMILES ACDLabs 12.01 c1(ccc(C(CCC(O)=O)=O)cc1)C(C)(C)C
HH4 InChI InChI 1.03 InChI=1S/C14H18O3/c1-14(2,3)11-6-4-10(5-7-11)12(15)8-9-13(16)17/h4-7H,8-9H2,1-3H3,(H,16,17)
HH4 InChIKey InChI 1.03 XJHBTHNAMOUNRQ-UHFFFAOYSA-N
HH4 SMILES_CANONICAL CACTVS 3.385 CC(C)(C)c1ccc(cc1)C(=O)CCC(O)=O
HH4 SMILES CACTVS 3.385 CC(C)(C)c1ccc(cc1)C(=O)CCC(O)=O
HH4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)(C)c1ccc(cc1)C(=O)CCC(=O)O
HH4 SMILES "OpenEye OEToolkits" 2.0.6 CC(C)(C)c1ccc(cc1)C(=O)CCC(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HH4 "SYSTEMATIC NAME" ACDLabs 12.01 "4-(4-tert-butylphenyl)-4-oxobutanoic acid"
HH4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-(4-~{tert}-butylphenyl)-4-oxidanylidene-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HH4 'Create component' 2018-07-02 RCSB
HH4 'Initial release' 2018-07-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HH4 C4 C 6.897 3.232 1
HH4 C2 C 8.397 4.732 2
HH4 C3 C 6.897 6.232 3
HH4 C1 C 6.897 4.732 4
HH4 C7 C 6.897 0.233 5
HH4 C6 C 5.598 0.983 6
HH4 C8 C 8.196 0.983 7
HH4 C12 C 5.598 -3.518 8
HH4 C13 C 4.299 -4.268 9
HH4 C9 C 8.196 2.482 10
HH4 C5 C 5.598 2.482 11
HH4 C11 C 5.598 -2.018 12
HH4 O1 O 4.299 -5.768 13
HH4 O2 O 8.196 -2.018 14
HH4 C10 C 6.897 -1.268 15
HH4 O O 3.000 -3.518 16
HH4 C C 5.397 4.732 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HH4 C3 C1 SINGLE NONE 1
HH4 C2 C1 SINGLE NONE 2
HH4 C1 C4 SINGLE NONE 3
HH4 C1 C SINGLE NONE 4
HH4 C4 C5 DOUBLE NONE 5
HH4 C4 C9 SINGLE NONE 6
HH4 C5 C6 SINGLE NONE 7
HH4 C9 C8 DOUBLE NONE 8
HH4 C6 C7 DOUBLE NONE 9
HH4 C8 C7 SINGLE NONE 10
HH4 C7 C10 SINGLE NONE 11
HH4 O1 C13 DOUBLE NONE 12
HH4 C10 O2 DOUBLE NONE 13
HH4 C10 C11 SINGLE NONE 14
HH4 C11 C12 SINGLE NONE 15
HH4 C13 O SINGLE NONE 16
HH4 C13 C12 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HH4 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HH4 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HH4 C4 S1 1
HH4 C7 S1 1
HH4 C6 S1 1
HH4 C8 S1 1
HH4 C9 S1 1
HH4 C5 S1 1
HH4 C4 F1 1
HH4 C5 F1 1
HH4 C6 F1 1
HH4 C7 F1 1
HH4 C8 F1 1
HH4 C9 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HH4
_pdbe_chem_comp_rdkit_properties.exactmw 234.126
_pdbe_chem_comp_rdkit_properties.amw 234.295
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 126.844
_pdbe_chem_comp_rdkit_properties.tpsa 54.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.922
_pdbe_chem_comp_rdkit_properties.CrippenMR 65.810
_pdbe_chem_comp_rdkit_properties.chi0v 8.225
_pdbe_chem_comp_rdkit_properties.chi1v 4.112
_pdbe_chem_comp_rdkit_properties.chi2v 1.505
_pdbe_chem_comp_rdkit_properties.chi3v 1.505
_pdbe_chem_comp_rdkit_properties.chi4v 0.784
_pdbe_chem_comp_rdkit_properties.chi0n 26.225
_pdbe_chem_comp_rdkit_properties.chi1n 13.021
_pdbe_chem_comp_rdkit_properties.chi2n 1.505
_pdbe_chem_comp_rdkit_properties.chi3n 1.505
_pdbe_chem_comp_rdkit_properties.chi4n 0.784
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.640
_pdbe_chem_comp_rdkit_properties.kappa1 2.846
_pdbe_chem_comp_rdkit_properties.kappa2 5.127
_pdbe_chem_comp_rdkit_properties.kappa3 4.020
_pdbe_chem_comp_rdkit_properties.Phi 0.858
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HH4 UniChem ChEMBL CHEMBL4460800
HH4 UniChem PDBe HH4
HH4 UniChem ZINC ZINC000002579954
HH4 UniChem eMolecules 2856409
HH4 UniChem SureChEMBL SCHEMBL2051247
HH4 UniChem BindingDb 50530944
HH4 UniChem 'EPA CompTox Dashboard' DTXSID70366403
HH4 UniChem PubChem 2064037
HH4 UniChem Mcule MCULE-3540958322
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HH4 C4 -1.654 -0.276 -0.113 ETKDGv3 1
HH4 C2 -3.414 -0.743 1.635 ETKDGv3 2
HH4 C3 -3.858 1.044 -0.050 ETKDGv3 3
HH4 C1 -3.170 -0.324 0.168 ETKDGv3 4
HH4 C7 1.170 -0.244 -0.606 ETKDGv3 5
HH4 C6 0.552 -1.374 -0.224 ETKDGv3 6
HH4 C8 0.357 0.984 -0.787 ETKDGv3 7
HH4 C12 4.888 0.868 -0.446 ETKDGv3 8
HH4 C13 5.000 0.437 0.984 ETKDGv3 9
HH4 C9 -0.961 0.973 -0.557 ETKDGv3 10
HH4 C5 -0.902 -1.389 0.034 ETKDGv3 11
HH4 C11 3.422 1.053 -0.865 ETKDGv3 12
HH4 O1 5.221 -0.771 1.266 ETKDGv3 13
HH4 O2 3.222 -1.321 -1.124 ETKDGv3 14
HH4 C10 2.634 -0.236 -0.858 ETKDGv3 15
HH4 O 4.826 1.368 2.003 ETKDGv3 16
HH4 C -3.842 -1.344 -0.777 ETKDGv3 17
HH4 H1 -4.500 -0.736 1.871 ETKDGv3 18
HH4 H2 -3.038 -1.769 1.834 ETKDGv3 19
HH4 H3 -2.900 -0.042 2.328 ETKDGv3 20
HH4 H4 -3.748 1.379 -1.104 ETKDGv3 21
HH4 H5 -3.431 1.814 0.628 ETKDGv3 22
HH4 H6 -4.947 0.976 0.166 ETKDGv3 23
HH4 H7 1.108 -2.292 -0.081 ETKDGv3 24
HH4 H8 0.817 1.902 -1.130 ETKDGv3 25
HH4 H9 5.391 0.133 -1.112 ETKDGv3 26
HH4 H10 5.419 1.837 -0.565 ETKDGv3 27
HH4 H11 -1.503 1.894 -0.711 ETKDGv3 28
HH4 H12 -1.343 -2.325 0.348 ETKDGv3 29
HH4 H13 3.393 1.475 -1.892 ETKDGv3 30
HH4 H14 2.955 1.792 -0.179 ETKDGv3 31
HH4 H15 4.885 1.091 2.976 ETKDGv3 32
HH4 H16 -4.943 -1.358 -0.623 ETKDGv3 33
HH4 H17 -3.469 -2.374 -0.598 ETKDGv3 34
HH4 H18 -3.640 -1.079 -1.838 ETKDGv3 35
#