data_HJ5
#
_chem_comp.id HJ5
_chem_comp.name
"[(1~{R})-1-[[(2~{S})-2-[[(2~{S})-1-azaniumyl-1-oxidanylidene-3-phenyl-propan-2-yl]carbamoyl]pent-4-ynyl]-oxidanyl-phosphoryl]-3-phenyl-propyl]azanium"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H32 N3 O4 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 2
_chem_comp.pdbx_initial_date 2018-12-07
_chem_comp.pdbx_modified_date 2019-04-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 457.502
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HJ5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Q4R
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HJ5 C1 C1 C 0 1 N N R N N N -618.195 377.633 453.050 -3.184 -1.527 -1.237 C1 HJ5 1
HJ5 C2 C2 C 0 1 N N N N N N -619.474 377.094 453.717 -4.569 -1.119 -0.731 C2 HJ5 2
HJ5 C3 C3 C 0 1 N N N N N N -620.474 376.561 452.670 -4.685 0.406 -0.738 C3 HJ5 3
HJ5 C14 C4 C 0 1 N N N N N N -617.893 379.369 455.430 -0.255 -1.302 -0.753 C14 HJ5 4
HJ5 C15 C5 C 0 1 N N S N N N -617.029 379.910 456.561 0.811 -0.810 0.228 C15 HJ5 5
HJ5 C16 C6 C 0 1 N N N N N N -616.181 381.081 456.077 0.804 -1.697 1.475 C16 HJ5 6
HJ5 C17 C7 C 0 1 N N N N N N -615.236 381.494 457.110 1.745 -1.153 2.468 C17 HJ5 7
HJ5 C20 C8 C 0 1 N N N N N N -617.963 380.434 457.620 2.166 -0.877 -0.428 C20 HJ5 8
HJ5 C21 C9 C 0 1 N N N N N N -614.402 381.904 457.991 2.496 -0.720 3.260 C21 HJ5 9
HJ5 C24 C10 C 0 1 N N S N N N -618.752 380.368 459.929 4.581 -0.555 -0.387 C24 HJ5 10
HJ5 C25 C11 C 0 1 N N N N N N -619.390 379.114 460.521 5.518 0.457 0.275 C25 HJ5 11
HJ5 C26 C12 C 0 1 Y N N N N N -620.196 378.369 459.471 5.016 1.854 0.012 C26 HJ5 12
HJ5 C27 C13 C 0 1 Y N N N N N -619.630 377.335 458.734 4.130 2.447 0.892 C27 HJ5 13
HJ5 C28 C14 C 0 1 Y N N N N N -620.388 376.685 457.769 3.669 3.727 0.650 C28 HJ5 14
HJ5 C29 C15 C 0 1 Y N N N N N -621.711 377.043 457.546 4.093 4.415 -0.472 C29 HJ5 15
HJ5 C30 C16 C 0 1 Y N N N N N -622.270 378.069 458.287 4.979 3.822 -1.351 C30 HJ5 16
HJ5 C31 C17 C 0 1 Y N N N N N -621.515 378.724 459.241 5.445 2.543 -1.107 C31 HJ5 17
HJ5 C32 C18 C 0 1 N N N N N N -618.064 381.144 461.020 5.148 -1.942 -0.229 C32 HJ5 18
HJ5 C4 C19 C 0 1 Y N N N N N -621.801 376.255 453.315 -6.050 0.808 -0.240 C4 HJ5 19
HJ5 C5 C20 C 0 1 Y N N N N N -622.720 377.272 453.516 -6.255 1.030 1.109 C5 HJ5 20
HJ5 C6 C21 C 0 1 Y N N N N N -623.940 377.000 454.130 -7.506 1.398 1.566 C6 HJ5 21
HJ5 C7 C22 C 0 1 Y N N N N N -624.256 375.703 454.527 -8.552 1.546 0.675 C7 HJ5 22
HJ5 C8 C23 C 0 1 Y N N N N N -623.336 374.689 454.323 -8.347 1.325 -0.674 C8 HJ5 23
HJ5 C9 C24 C 0 1 Y N N N N N -622.121 374.973 453.717 -7.094 0.961 -1.132 C9 HJ5 24
HJ5 N10 N1 N 1 1 N N N N N N -617.406 376.521 452.510 -3.072 -2.992 -1.231 N10 HJ5 25
HJ5 N23 N2 N 0 1 N N N N N N -617.828 380.004 458.865 3.264 -0.490 0.252 N23 HJ5 26
HJ5 N34 N3 N 1 1 N N N N N N -618.670 382.301 461.553 6.405 -2.248 -0.760 N34 HJ5 27
HJ5 O12 O1 O 0 1 N N N N N N -615.961 379.126 453.443 -2.095 -1.319 1.229 O12 HJ5 28
HJ5 O13 O2 O 0 1 N N N N N N -616.276 377.227 454.882 -2.028 0.790 -0.157 O13 HJ5 29
HJ5 O22 O3 O 0 1 N N N N N N -618.835 381.207 457.290 2.269 -1.278 -1.568 O22 HJ5 30
HJ5 O33 O4 O 0 1 N N N N N N -616.988 380.785 461.457 4.517 -2.790 0.356 O33 HJ5 31
HJ5 P11 P1 P 0 1 N N N N N N -617.012 378.371 454.198 -1.906 -0.816 -0.150 P11 HJ5 32
HJ5 H1 H1 H 0 1 N N N N N N -618.435 378.384 452.283 -3.044 -1.157 -2.253 H1 HJ5 33
HJ5 H22 H2 H 0 1 N N N N N N -619.950 377.906 454.286 -5.333 -1.545 -1.382 H22 HJ5 34
HJ5 H2 H3 H 0 1 N N N N N N -619.203 376.277 454.402 -4.709 -1.490 0.284 H2 HJ5 35
HJ5 H32 H4 H 0 1 N N N N N N -620.070 375.642 452.219 -3.921 0.832 -0.088 H32 HJ5 36
HJ5 H3 H5 H 0 1 N N N N N N -620.618 377.321 451.888 -4.546 0.777 -1.754 H3 HJ5 37
HJ5 H141 H6 H 0 0 N N N N N N -618.350 380.225 454.911 -0.081 -0.857 -1.732 H141 HJ5 38
HJ5 H14 H7 H 0 1 N N N N N N -618.682 378.744 455.873 -0.203 -2.388 -0.832 H14 HJ5 39
HJ5 H15 H8 H 0 1 N N N N N N -616.388 379.115 456.968 0.596 0.220 0.513 H15 HJ5 40
HJ5 H16 H9 H 0 1 N N N N N N -615.624 380.777 455.179 -0.199 -1.719 1.900 H16 HJ5 41
HJ5 H161 H10 H 0 0 N N N N N N -616.840 381.927 455.831 1.107 -2.708 1.204 H161 HJ5 42
HJ5 H21 H11 H 0 1 N N N N N N -613.712 382.243 458.720 3.167 -0.333 3.969 H21 HJ5 43
HJ5 H24 H12 H 0 1 N N N N N N -619.553 380.994 459.510 4.483 -0.321 -1.447 H24 HJ5 44
HJ5 H251 H13 H 0 0 N N N N N N -620.056 379.404 461.347 5.547 0.278 1.349 H251 HJ5 45
HJ5 H25 H14 H 0 1 N N N N N N -618.598 378.453 460.903 6.521 0.348 -0.139 H25 HJ5 46
HJ5 H27 H15 H 0 1 N N N N N N -618.607 377.039 458.911 3.798 1.910 1.768 H27 HJ5 47
HJ5 H28 H16 H 0 1 N N N N N N -619.944 375.892 457.185 2.977 4.191 1.338 H28 HJ5 48
HJ5 H29 H17 H 0 1 N N N N N N -622.298 376.526 456.801 3.733 5.415 -0.661 H29 HJ5 49
HJ5 H30 H18 H 0 1 N N N N N N -623.297 378.358 458.120 5.311 4.359 -2.228 H30 HJ5 50
HJ5 H31 H19 H 0 1 N N N N N N -621.959 379.524 459.815 6.137 2.080 -1.794 H31 HJ5 51
HJ5 H5 H20 H 0 1 N N N N N N -622.490 378.277 453.196 -5.438 0.914 1.806 H5 HJ5 52
HJ5 H6 H21 H 0 1 N N N N N N -624.646 377.800 454.299 -7.667 1.570 2.620 H6 HJ5 53
HJ5 H7 H22 H 0 1 N N N N N N -625.209 375.491 454.989 -9.530 1.834 1.032 H7 HJ5 54
HJ5 H8 H23 H 0 1 N N N N N N -623.563 373.680 454.635 -9.164 1.440 -1.371 H8 HJ5 55
HJ5 H9 H24 H 0 1 N N N N N N -621.411 374.175 453.556 -6.932 0.793 -2.187 H9 HJ5 56
HJ5 HN12 H25 H 0 0 N N N N N N -617.948 376.026 451.831 -3.780 -3.386 -1.833 HN12 HJ5 57
HJ5 HN10 H26 H 0 0 N N N N N N -616.578 376.878 452.079 -2.159 -3.261 -1.565 HN10 HJ5 58
HJ5 HN11 H27 H 0 0 N N N N N N -617.154 375.900 453.252 -3.201 -3.335 -0.291 HN11 HJ5 59
HJ5 HN23 H28 H 0 0 N N N N N N -617.059 379.404 459.083 3.182 -0.170 1.163 HN23 HJ5 60
HJ5 HN31 H29 H 0 0 N N N N N N -618.084 382.687 462.265 6.787 -1.431 -1.211 HN31 HJ5 61
HJ5 HN32 H30 H 0 0 N N N N N N -618.798 382.975 460.826 7.021 -2.542 -0.017 HN32 HJ5 62
HJ5 H4 H31 H 0 1 N N N N N N -615.352 377.271 454.667 -1.914 1.189 -1.030 H4 HJ5 63
HJ5 HN33 H32 H 0 0 N N N N N N -619.558 382.061 461.946 6.312 -2.993 -1.434 HN33 HJ5 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HJ5 N10 C1 SING N N 1
HJ5 C3 C4 SING N N 2
HJ5 C3 C2 SING N N 3
HJ5 C1 C2 SING N N 4
HJ5 C1 P11 SING N N 5
HJ5 C4 C5 DOUB Y N 6
HJ5 C4 C9 SING Y N 7
HJ5 O12 P11 DOUB N N 8
HJ5 C5 C6 SING Y N 9
HJ5 C9 C8 DOUB Y N 10
HJ5 C6 C7 DOUB Y N 11
HJ5 P11 O13 SING N N 12
HJ5 P11 C14 SING N N 13
HJ5 C8 C7 SING Y N 14
HJ5 C14 C15 SING N N 15
HJ5 C16 C15 SING N N 16
HJ5 C16 C17 SING N N 17
HJ5 C15 C20 SING N N 18
HJ5 C17 C21 TRIP N N 19
HJ5 O22 C20 DOUB N N 20
HJ5 C29 C28 DOUB Y N 21
HJ5 C29 C30 SING Y N 22
HJ5 C20 N23 SING N N 23
HJ5 C28 C27 SING Y N 24
HJ5 C30 C31 DOUB Y N 25
HJ5 C27 C26 DOUB Y N 26
HJ5 N23 C24 SING N N 27
HJ5 C31 C26 SING Y N 28
HJ5 C26 C25 SING N N 29
HJ5 C24 C25 SING N N 30
HJ5 C24 C32 SING N N 31
HJ5 C32 O33 DOUB N N 32
HJ5 C32 N34 SING N N 33
HJ5 C1 H1 SING N N 34
HJ5 C2 H22 SING N N 35
HJ5 C2 H2 SING N N 36
HJ5 C3 H32 SING N N 37
HJ5 C3 H3 SING N N 38
HJ5 C14 H141 SING N N 39
HJ5 C14 H14 SING N N 40
HJ5 C15 H15 SING N N 41
HJ5 C16 H16 SING N N 42
HJ5 C16 H161 SING N N 43
HJ5 C21 H21 SING N N 44
HJ5 C24 H24 SING N N 45
HJ5 C25 H251 SING N N 46
HJ5 C25 H25 SING N N 47
HJ5 C27 H27 SING N N 48
HJ5 C28 H28 SING N N 49
HJ5 C29 H29 SING N N 50
HJ5 C30 H30 SING N N 51
HJ5 C31 H31 SING N N 52
HJ5 C5 H5 SING N N 53
HJ5 C6 H6 SING N N 54
HJ5 C7 H7 SING N N 55
HJ5 C8 H8 SING N N 56
HJ5 C9 H9 SING N N 57
HJ5 N10 HN10 SING N N 58
HJ5 N10 HN11 SING N N 59
HJ5 N23 HN23 SING N N 60
HJ5 N34 HN31 SING N N 61
HJ5 N34 HN32 SING N N 62
HJ5 O13 H4 SING N N 63
HJ5 N34 HN33 SING N N 64
HJ5 HN12 N10 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HJ5 InChI InChI 1.03 InChI=1S/C24H30N3O4P/c1-2-9-20(17-32(30,31)22(25)15-14-18-10-5-3-6-11-18)24(29)27-21(23(26)28)16-19-12-7-4-8-13-19/h1,3-8,10-13,20-22H,9,14-17,25H2,(H2,26,28)(H,27,29)(H,30,31)/p+2/t20-,21+,22-/m1/s1
HJ5 InChIKey InChI 1.03 QCPJTEUURKCRNT-BHIFYINESA-P
HJ5 SMILES_CANONICAL CACTVS 3.385 "[NH3+][C@@H](CCc1ccccc1)[P](O)(=O)C[C@@H](CC#C)C(=O)N[C@@H](Cc2ccccc2)C([NH3+])=O"
HJ5 SMILES CACTVS 3.385 "[NH3+][CH](CCc1ccccc1)[P](O)(=O)C[CH](CC#C)C(=O)N[CH](Cc2ccccc2)C([NH3+])=O"
HJ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C#CC[C@H](CP(=O)([C@H](CCc1ccccc1)[NH3+])O)C(=O)N[C@@H](Cc2ccccc2)C(=O)[NH3+]"
HJ5 SMILES "OpenEye OEToolkits" 2.0.6 "C#CCC(CP(=O)(C(CCc1ccccc1)[NH3+])O)C(=O)NC(Cc2ccccc2)C(=O)[NH3+]"
#
_pdbx_chem_comp_identifier.comp_id HJ5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"[(1~{R})-1-[[(2~{S})-2-[[(2~{S})-1-azaniumyl-1-oxidanylidene-3-phenyl-propan-2-yl]carbamoyl]pent-4-ynyl]-oxidanyl-phosphoryl]-3-phenyl-propyl]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HJ5 'Create component' 2018-12-07 EBI
HJ5 'Other modification' 2018-12-10 EBI
HJ5 'Initial release' 2019-04-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HJ5 C1 C 5.104 3.750 1
HJ5 C2 C 6.404 4.500 2
HJ5 C3 C 6.404 6.000 3
HJ5 C14 C 5.104 0.750 4
HJ5 C15 C 6.404 0.000 5
HJ5 C16 C 7.702 0.750 6
HJ5 C17 C 7.702 2.250 7
HJ5 C20 C 6.404 -1.500 8
HJ5 C21 C 7.702 3.750 9
HJ5 C24 C 7.702 -3.750 10
HJ5 C25 C 6.404 -4.500 11
HJ5 C26 C 6.404 -6.000 12
HJ5 C27 C 7.702 -6.750 13
HJ5 C28 C 7.702 -8.250 14
HJ5 C29 C 6.404 -9.000 15
HJ5 C30 C 5.104 -8.250 16
HJ5 C31 C 5.104 -6.750 17
HJ5 C32 C 9.002 -4.500 18
HJ5 C4 C 7.702 6.750 19
HJ5 C5 C 7.702 8.250 20
HJ5 C6 C 9.002 9.000 21
HJ5 C7 C 10.301 8.250 22
HJ5 C8 C 10.301 6.750 23
HJ5 C9 C 9.002 6.000 24
HJ5 N10 N 3.805 4.500 25
HJ5 N23 N 7.702 -2.250 26
HJ5 N34 N 10.301 -3.750 27
HJ5 O12 O 3.604 2.250 28
HJ5 O13 O 6.604 2.250 29
HJ5 O22 O 5.104 -2.250 30
HJ5 O33 O 9.002 -6.000 31
HJ5 P11 P 5.104 2.250 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HJ5 C1 N10 SINGLE BEGINWEDGE 1
HJ5 C3 C4 SINGLE NONE 2
HJ5 C3 C2 SINGLE NONE 3
HJ5 C1 C2 SINGLE NONE 4
HJ5 C1 P11 SINGLE NONE 5
HJ5 C4 C5 DOUBLE NONE 6
HJ5 C4 C9 SINGLE NONE 7
HJ5 O12 P11 DOUBLE NONE 8
HJ5 C5 C6 SINGLE NONE 9
HJ5 C9 C8 DOUBLE NONE 10
HJ5 C6 C7 DOUBLE NONE 11
HJ5 P11 O13 SINGLE BEGINWEDGE 12
HJ5 P11 C14 SINGLE NONE 13
HJ5 C8 C7 SINGLE NONE 14
HJ5 C15 C14 SINGLE BEGINWEDGE 15
HJ5 C16 C15 SINGLE NONE 16
HJ5 C16 C17 SINGLE NONE 17
HJ5 C15 C20 SINGLE NONE 18
HJ5 C17 C21 TRIPLE NONE 19
HJ5 O22 C20 DOUBLE NONE 20
HJ5 C29 C28 SINGLE NONE 21
HJ5 C29 C30 DOUBLE NONE 22
HJ5 C20 N23 SINGLE NONE 23
HJ5 C28 C27 DOUBLE NONE 24
HJ5 C30 C31 SINGLE NONE 25
HJ5 C27 C26 SINGLE NONE 26
HJ5 N23 C24 SINGLE NONE 27
HJ5 C31 C26 DOUBLE NONE 28
HJ5 C26 C25 SINGLE NONE 29
HJ5 C24 C25 SINGLE BEGINDASH 30
HJ5 C24 C32 SINGLE NONE 31
HJ5 C32 O33 DOUBLE NONE 32
HJ5 C32 N34 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HJ5 MurckoScaffold S1 scaffold 'O=C(CC[PH](=O)CCCc1ccccc1)NCCc1ccccc1' InChI=1S/C20H26NO2P/c22-20(21-15-13-19-10-5-2-6-11-19)14-17-24(23)16-7-12-18-8-3-1-4-9-18/h1-6,8-11,24H,7,12-17H2,(H,21,22) HYOPNSPMZMSOFE-UHFFFAOYSA-N
HJ5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HJ5 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
HJ5 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HJ5 C1 S1 1
HJ5 C2 S1 1
HJ5 C3 S1 1
HJ5 C14 S1 1
HJ5 C15 S1 1
HJ5 C20 S1 1
HJ5 C24 S1 1
HJ5 C25 S1 1
HJ5 C26 S1 1
HJ5 C27 S1 1
HJ5 C28 S1 1
HJ5 C29 S1 1
HJ5 C30 S1 1
HJ5 C31 S1 1
HJ5 C4 S1 1
HJ5 C5 S1 1
HJ5 C6 S1 1
HJ5 C7 S1 1
HJ5 C8 S1 1
HJ5 C9 S1 1
HJ5 N23 S1 1
HJ5 O12 S1 1
HJ5 O22 S1 1
HJ5 P11 S1 1
HJ5 N23 F1 1
HJ5 C20 F1 1
HJ5 O22 F1 1
HJ5 C15 F1 1
HJ5 O33 F2 1
HJ5 C32 F2 1
HJ5 C24 F2 1
HJ5 N23 F2 1
HJ5 C26 F3 1
HJ5 C27 F3 1
HJ5 C28 F3 1
HJ5 C29 F3 1
HJ5 C30 F3 1
HJ5 C31 F3 1
HJ5 C4 F3 2
HJ5 C5 F3 2
HJ5 C6 F3 2
HJ5 C7 F3 2
HJ5 C8 F3 2
HJ5 C9 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id HJ5
_pdbe_chem_comp_rdkit_properties.exactmw 457.212
_pdbe_chem_comp_rdkit_properties.amw 457.511
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 234.042
_pdbe_chem_comp_rdkit_properties.tpsa 138.750
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.484
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.511
_pdbe_chem_comp_rdkit_properties.chi0v 16.316
_pdbe_chem_comp_rdkit_properties.chi1v 9.490
_pdbe_chem_comp_rdkit_properties.chi2v 4.085
_pdbe_chem_comp_rdkit_properties.chi3v 4.085
_pdbe_chem_comp_rdkit_properties.chi4v 2.369
_pdbe_chem_comp_rdkit_properties.chi0n 47.422
_pdbe_chem_comp_rdkit_properties.chi1n 23.404
_pdbe_chem_comp_rdkit_properties.chi2n 2.898
_pdbe_chem_comp_rdkit_properties.chi3n 2.898
_pdbe_chem_comp_rdkit_properties.chi4n 1.614
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.750
_pdbe_chem_comp_rdkit_properties.kappa1 6.024
_pdbe_chem_comp_rdkit_properties.kappa2 12.328
_pdbe_chem_comp_rdkit_properties.kappa3 8.065
_pdbe_chem_comp_rdkit_properties.Phi 2.321
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HJ5 UniChem PDBe HJ5
HJ5 UniChem PubChem 137700793
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HJ5 C1 2.342 -1.628 0.662 ETKDGv3 1
HJ5 C2 3.397 -0.821 -0.125 ETKDGv3 2
HJ5 C3 4.669 -0.546 0.689 ETKDGv3 3
HJ5 C14 -0.588 -2.406 0.685 ETKDGv3 4
HJ5 C15 -1.443 -1.323 1.384 ETKDGv3 5
HJ5 C16 -0.598 -0.407 2.296 ETKDGv3 6
HJ5 C17 -1.443 0.392 3.193 ETKDGv3 7
HJ5 C20 -2.289 -0.569 0.379 ETKDGv3 8
HJ5 C21 -2.126 1.048 3.939 ETKDGv3 9
HJ5 C24 -4.077 -0.766 -1.471 ETKDGv3 10
HJ5 C25 -5.271 0.166 -1.144 ETKDGv3 11
HJ5 C26 -4.967 1.272 -0.162 ETKDGv3 12
HJ5 C27 -4.598 2.626 -0.648 ETKDGv3 13
HJ5 C28 -4.339 3.609 0.224 ETKDGv3 14
HJ5 C29 -4.437 3.357 1.675 ETKDGv3 15
HJ5 C30 -4.790 2.146 2.120 ETKDGv3 16
HJ5 C31 -5.062 1.054 1.163 ETKDGv3 17
HJ5 C32 -3.099 -0.217 -2.494 ETKDGv3 18
HJ5 C4 5.569 0.412 -0.045 ETKDGv3 19
HJ5 C5 6.464 -0.037 -0.944 ETKDGv3 20
HJ5 C6 7.315 0.916 -1.687 ETKDGv3 21
HJ5 C7 7.186 2.233 -1.481 ETKDGv3 22
HJ5 C8 6.192 2.734 -0.510 ETKDGv3 23
HJ5 C9 5.423 1.874 0.168 ETKDGv3 24
HJ5 N10 2.842 -2.963 1.015 ETKDGv3 25
HJ5 N23 -3.388 -1.241 -0.262 ETKDGv3 26
HJ5 N34 -2.219 -1.105 -3.200 ETKDGv3 27
HJ5 O12 1.047 -2.745 -1.463 ETKDGv3 28
HJ5 O13 0.408 -0.260 -0.987 ETKDGv3 29
HJ5 O22 -2.018 0.628 0.088 ETKDGv3 30
HJ5 O33 -3.036 0.984 -2.711 ETKDGv3 31
HJ5 P11 0.803 -1.770 -0.332 ETKDGv3 32
HJ5 H1 2.100 -1.073 1.593 ETKDGv3 33
HJ5 H22 2.954 0.159 -0.410 ETKDGv3 34
HJ5 H2 3.665 -1.360 -1.061 ETKDGv3 35
HJ5 H32 5.217 -1.494 0.878 ETKDGv3 36
HJ5 H3 4.398 -0.113 1.677 ETKDGv3 37
HJ5 H141 -1.243 -3.017 0.027 ETKDGv3 38
HJ5 H14 -0.184 -3.099 1.451 ETKDGv3 39
HJ5 H15 -2.150 -1.873 2.045 ETKDGv3 40
HJ5 H16 0.033 0.282 1.696 ETKDGv3 41
HJ5 H161 0.069 -1.028 2.931 ETKDGv3 42
HJ5 H21 -2.723 1.624 4.595 ETKDGv3 43
HJ5 H24 -4.537 -1.656 -1.957 ETKDGv3 44
HJ5 H251 -6.097 -0.456 -0.733 ETKDGv3 45
HJ5 H25 -5.667 0.602 -2.086 ETKDGv3 46
HJ5 H27 -4.550 2.832 -1.709 ETKDGv3 47
HJ5 H28 -4.071 4.595 -0.134 ETKDGv3 48
HJ5 H29 -4.234 4.156 2.376 ETKDGv3 49
HJ5 H30 -4.879 1.963 3.183 ETKDGv3 50
HJ5 H31 -5.339 0.079 1.545 ETKDGv3 51
HJ5 H5 6.571 -1.098 -1.136 ETKDGv3 52
HJ5 H6 8.040 0.547 -2.401 ETKDGv3 53
HJ5 H7 7.807 2.932 -2.026 ETKDGv3 54
HJ5 H8 6.085 3.800 -0.352 ETKDGv3 55
HJ5 H9 4.692 2.249 0.874 ETKDGv3 56
HJ5 HN12 3.607 -2.887 1.722 ETKDGv3 57
HJ5 HN10 2.081 -3.533 1.447 ETKDGv3 58
HJ5 HN11 3.198 -3.460 0.166 ETKDGv3 59
HJ5 HN23 -3.659 -2.184 0.098 ETKDGv3 60
HJ5 HN31 -1.231 -0.797 -3.056 ETKDGv3 61
HJ5 HN32 -2.449 -1.072 -4.219 ETKDGv3 62
HJ5 H4 0.958 -0.179 -1.807 ETKDGv3 63
HJ5 HN33 -2.324 -2.085 -2.854 ETKDGv3 64
#