data_HJ7
#
_chem_comp.id HJ7
_chem_comp.name "(2Z)-4-oxobut-2-ene-1,2,4-tricarboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H6 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (3Z)-2-keto-4-carboxy-3-hexenedioate
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-07-03
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 202.118
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HJ7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6DXS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HJ7 C02 C1 C 0 1 N N N N N N 110.083 91.562 181.680 1.672 -0.023 0.070 C02 HJ7 1
HJ7 C03 C2 C 0 1 N N N N N N 111.020 91.955 180.528 2.951 -0.791 0.063 C03 HJ7 2
HJ7 C06 C3 C 0 1 N N N N N N 108.976 92.586 182.087 0.448 -0.627 -0.480 C06 HJ7 3
HJ7 C07 C4 C 0 1 N N N N N N 107.889 92.374 182.847 -0.672 0.112 -0.601 C07 HJ7 4
HJ7 C08 C5 C 0 1 N N N N N N 107.641 91.050 183.579 -0.641 1.554 -0.293 C08 HJ7 5
HJ7 C11 C6 C 0 1 N N N N N N 106.894 93.547 183.064 -1.957 -0.536 -1.050 C11 HJ7 6
HJ7 C12 C7 C 0 1 N N N N N N 105.648 93.188 183.919 -2.773 -0.922 0.157 C12 HJ7 7
HJ7 O01 O1 O 0 1 N N N N N N 110.234 90.451 182.120 1.640 1.098 0.534 O01 HJ7 8
HJ7 O04 O2 O 0 1 N N N N N N 111.121 93.161 180.150 4.070 -0.239 0.567 O04 HJ7 9
HJ7 O05 O3 O 0 1 N N N N N N 111.679 91.042 179.955 2.982 -1.914 -0.396 O05 HJ7 10
HJ7 O09 O4 O 0 1 N N N N N N 108.244 90.916 184.690 -1.505 2.072 0.602 O09 HJ7 11
HJ7 O10 O5 O 0 1 N N N N N N 106.862 90.143 183.165 0.163 2.276 -0.848 O10 HJ7 12
HJ7 O13 O6 O 0 1 N N N N N N 105.811 92.383 184.878 -3.965 -1.518 -0.002 O13 HJ7 13
HJ7 O14 O7 O 0 1 N N N N N N 104.466 93.689 183.746 -2.354 -0.695 1.267 O14 HJ7 14
HJ7 H061 H1 H 0 0 N N N N N N 109.100 93.590 181.710 0.448 -1.663 -0.786 H061 HJ7 15
HJ7 H112 H2 H 0 0 N N N N N N 107.432 94.364 183.567 -2.523 0.167 -1.661 H112 HJ7 16
HJ7 H111 H3 H 0 0 N N N N N N 106.547 93.889 182.078 -1.729 -1.427 -1.635 H111 HJ7 17
HJ7 H1 H4 H 0 1 N N N N N N 111.732 93.216 179.425 4.875 -0.775 0.540 H1 HJ7 18
HJ7 H2 H5 H 0 1 N N N N N N 108.004 90.085 185.083 -1.446 3.022 0.771 H2 HJ7 19
HJ7 H3 H6 H 0 1 N N N N N N 104.989 92.272 185.342 -4.452 -1.748 0.801 H3 HJ7 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HJ7 O05 C03 DOUB N N 1
HJ7 O04 C03 SING N N 2
HJ7 C03 C02 SING N N 3
HJ7 C02 C06 SING N N 4
HJ7 C02 O01 DOUB N N 5
HJ7 C06 C07 DOUB N Z 6
HJ7 C07 C11 SING N N 7
HJ7 C07 C08 SING N N 8
HJ7 C11 C12 SING N N 9
HJ7 O10 C08 DOUB N N 10
HJ7 C08 O09 SING N N 11
HJ7 O14 C12 DOUB N N 12
HJ7 C12 O13 SING N N 13
HJ7 C06 H061 SING N N 14
HJ7 C11 H112 SING N N 15
HJ7 C11 H111 SING N N 16
HJ7 O04 H1 SING N N 17
HJ7 O09 H2 SING N N 18
HJ7 O13 H3 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HJ7 SMILES ACDLabs 12.01 C(\C=C(\CC(O)=O)C(O)=O)(=O)C(O)=O
HJ7 InChI InChI 1.03 InChI=1S/C7H6O7/c8-4(7(13)14)1-3(6(11)12)2-5(9)10/h1H,2H2,(H,9,10)(H,11,12)(H,13,14)/b3-1-
HJ7 InChIKey InChI 1.03 POTZSFVTPSBXLW-IWQZZHSRSA-N
HJ7 SMILES_CANONICAL CACTVS 3.385 OC(=O)CC(=C/C(=O)C(O)=O)/C(O)=O
HJ7 SMILES CACTVS 3.385 OC(=O)CC(=CC(=O)C(O)=O)C(O)=O
HJ7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C(/C(=C/C(=O)C(=O)O)/C(=O)O)C(=O)O
HJ7 SMILES "OpenEye OEToolkits" 2.0.6 C(C(=CC(=O)C(=O)O)C(=O)O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HJ7 "SYSTEMATIC NAME" ACDLabs 12.01 "(2Z)-4-oxobut-2-ene-1,2,4-tricarboxylic acid"
HJ7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(~{Z})-4-oxidanylidenebut-2-ene-1,2,4-tricarboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HJ7 'Create component' 2018-07-03 RCSB
HJ7 'Initial release' 2018-09-26 RCSB
HJ7 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HJ7
_pdbx_chem_comp_synonyms.name (3Z)-2-keto-4-carboxy-3-hexenedioate
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id HJ7
_pdbe_chem_comp_synonyms.name (3Z)-2-keto-4-carboxy-3-hexenedioate
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HJ7 C02 C 7.702 1.875 1
HJ7 C03 C 9.002 2.625 2
HJ7 C06 C 7.702 0.375 3
HJ7 C07 C 6.404 -0.375 4
HJ7 C08 C 5.104 0.375 5
HJ7 C11 C 6.404 -1.875 6
HJ7 C12 C 7.702 -2.625 7
HJ7 O01 O 6.404 2.625 8
HJ7 O04 O 10.301 1.875 9
HJ7 O05 O 9.002 4.125 10
HJ7 O09 O 5.104 1.875 11
HJ7 O10 O 3.805 -0.375 12
HJ7 O13 O 7.702 -4.125 13
HJ7 O14 O 9.002 -1.875 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HJ7 O05 C03 DOUBLE NONE 1
HJ7 O04 C03 SINGLE NONE 2
HJ7 C03 C02 SINGLE NONE 3
HJ7 C02 C06 SINGLE ENDUPRIGHT 4
HJ7 C02 O01 DOUBLE NONE 5
HJ7 C06 C07 DOUBLE NONE 6
HJ7 C07 C11 SINGLE ENDUPRIGHT 7
HJ7 C07 C08 SINGLE ENDDOWNRIGHT 8
HJ7 C11 C12 SINGLE NONE 9
HJ7 O10 C08 DOUBLE NONE 10
HJ7 C08 O09 SINGLE NONE 11
HJ7 O14 C12 DOUBLE NONE 12
HJ7 C12 O13 SINGLE NONE 13
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id HJ7
_pdbe_chem_comp_rdkit_properties.exactmw 202.011
_pdbe_chem_comp_rdkit_properties.amw 202.118
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 85.958
_pdbe_chem_comp_rdkit_properties.tpsa 128.970
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.874
_pdbe_chem_comp_rdkit_properties.CrippenMR 40.614
_pdbe_chem_comp_rdkit_properties.chi0v 6.358
_pdbe_chem_comp_rdkit_properties.chi1v 2.929
_pdbe_chem_comp_rdkit_properties.chi2v 0.855
_pdbe_chem_comp_rdkit_properties.chi3v 0.855
_pdbe_chem_comp_rdkit_properties.chi4v 0.400
_pdbe_chem_comp_rdkit_properties.chi0n 12.358
_pdbe_chem_comp_rdkit_properties.chi1n 5.654
_pdbe_chem_comp_rdkit_properties.chi2n 0.855
_pdbe_chem_comp_rdkit_properties.chi3n 0.855
_pdbe_chem_comp_rdkit_properties.chi4n 0.400
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.180
_pdbe_chem_comp_rdkit_properties.kappa1 4.891
_pdbe_chem_comp_rdkit_properties.kappa2 4.751
_pdbe_chem_comp_rdkit_properties.kappa3 4.000
_pdbe_chem_comp_rdkit_properties.Phi 1.660
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HJ7 UniChem PDBe HJ7
HJ7 UniChem 'KEGG LIGAND' C05364
HJ7 UniChem ChEBI 1794
HJ7 UniChem ZINC ZINC000001530142
HJ7 UniChem SureChEMBL SCHEMBL4939663
HJ7 UniChem BRENDA 228686
HJ7 UniChem PubChem 5280779
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HJ7 C02 1.713 -0.058 0.832 ETKDGv3 1
HJ7 C03 2.770 -1.050 0.584 ETKDGv3 2
HJ7 C06 0.289 -0.411 0.631 ETKDGv3 3
HJ7 C07 -0.704 0.467 0.375 ETKDGv3 4
HJ7 C08 -0.453 1.876 -0.010 ETKDGv3 5
HJ7 C11 -2.127 -0.038 0.344 ETKDGv3 6
HJ7 C12 -2.480 -0.501 -1.033 ETKDGv3 7
HJ7 O01 2.033 1.075 1.282 ETKDGv3 8
HJ7 O04 4.099 -0.722 0.837 ETKDGv3 9
HJ7 O05 2.484 -2.193 0.137 ETKDGv3 10
HJ7 O09 0.677 2.220 -0.748 ETKDGv3 11
HJ7 O10 -1.297 2.767 0.278 ETKDGv3 12
HJ7 O13 -2.210 -1.812 -1.413 ETKDGv3 13
HJ7 O14 -2.985 0.304 -1.860 ETKDGv3 14
HJ7 H061 0.032 -1.457 0.750 ETKDGv3 15
HJ7 H112 -2.832 0.761 0.661 ETKDGv3 16
HJ7 H111 -2.263 -0.878 1.061 ETKDGv3 17
HJ7 H1 4.841 -1.391 0.670 ETKDGv3 18
HJ7 H2 0.841 3.178 -1.031 ETKDGv3 19
HJ7 H3 -2.427 -2.137 -2.348 ETKDGv3 20
#