data_HJH
#
_chem_comp.id HJH
_chem_comp.name "(2~{S})-2-azanyl-3-(2-methyl-5-oxidanyl-1,2,3-triazol-4-yl)propanoic acid"
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C6 H10 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-12-10
_chem_comp.pdbx_modified_date 2019-04-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 186.169
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HJH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Q60
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HJH N1 N1 N 0 1 Y N N N N N 41.573 34.611 -23.407 2.731 -0.793 -0.295 N1 HJH 1
HJH N3 N2 N 0 1 Y N N N N N 40.379 33.450 -24.962 1.592 0.909 0.466 N3 HJH 2
HJH C4 C1 C 0 1 Y N N N N N 42.037 34.848 -24.621 1.504 -1.217 -0.071 C4 HJH 3
HJH C5 C2 C 0 1 N N N N N N 39.780 33.165 -22.623 3.930 1.444 -0.033 C5 HJH 4
HJH C6 C3 C 0 1 N N N N N N 41.284 35.445 -29.318 -2.987 0.106 -0.037 C6 HJH 5
HJH C1 C4 C 0 1 N N S N N N 40.777 35.296 -27.857 -1.530 0.229 -0.402 C1 HJH 6
HJH C2 C5 C 0 1 N N N N N N 41.471 34.126 -27.124 -0.669 -0.125 0.812 C2 HJH 7
HJH C3 C6 C 0 1 Y N N N N N 41.312 34.135 -25.598 0.785 -0.121 0.415 C3 HJH 8
HJH N2 N3 N 0 1 Y N N N N N 40.578 33.771 -23.671 2.762 0.565 0.055 N2 HJH 9
HJH N4 N4 N 0 1 N N N N N N 39.298 35.167 -27.801 -1.245 1.609 -0.819 N4 HJH 10
HJH O1 O1 O 0 1 N N N N N N 42.463 35.492 -29.599 -3.573 -1.101 -0.015 O1 HJH 11
HJH O2 O2 O 0 1 N N N N N N 40.336 35.562 -30.244 -3.627 1.094 0.236 O2 HJH 12
HJH O3 O3 O 0 1 N N N N N N 43.087 35.662 -24.843 1.030 -2.475 -0.273 O3 HJH 13
HJH H4 H1 H 0 1 N N N N N N 39.059 32.465 -23.069 4.483 1.409 0.906 H4 HJH 14
HJH H6 H2 H 0 1 N N N N N N 40.438 32.621 -21.929 4.575 1.112 -0.846 H6 HJH 15
HJH H5 H3 H 0 1 N N N N N N 39.238 33.950 -22.075 3.602 2.466 -0.223 H5 HJH 16
HJH H1 H4 H 0 1 N N N N N N 41.054 36.219 -27.326 -1.301 -0.453 -1.221 H1 HJH 17
HJH H3 H5 H 0 1 N N N N N N 41.049 33.185 -27.506 -0.832 0.610 1.600 H3 HJH 18
HJH H2 H6 H 0 1 N N N N N N 42.546 34.167 -27.356 -0.943 -1.115 1.176 H2 HJH 19
HJH H7 H7 H 0 1 N N N N N N 39.007 35.073 -26.849 -1.449 2.260 -0.076 H7 HJH 20
HJH H8 H8 H 0 1 N N N N N N 38.877 35.982 -28.199 -0.289 1.702 -1.130 H8 HJH 21
HJH H11 H10 H 0 1 N N N N N N 42.561 35.619 -30.535 -4.510 -1.130 0.225 H11 HJH 22
HJH H10 H11 H 0 1 N N N N N N 43.403 36.005 -24.015 1.118 -3.057 0.494 H10 HJH 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HJH O2 C6 DOUB N N 1
HJH O1 C6 SING N N 2
HJH C6 C1 SING N N 3
HJH C1 N4 SING N N 4
HJH C1 C2 SING N N 5
HJH C2 C3 SING N N 6
HJH C3 N3 DOUB Y N 7
HJH C3 C4 SING Y N 8
HJH N3 N2 SING Y N 9
HJH O3 C4 SING N N 10
HJH C4 N1 DOUB Y N 11
HJH N2 N1 SING Y N 12
HJH N2 C5 SING N N 13
HJH C5 H4 SING N N 14
HJH C5 H6 SING N N 15
HJH C5 H5 SING N N 16
HJH C1 H1 SING N N 17
HJH C2 H3 SING N N 18
HJH C2 H2 SING N N 19
HJH N4 H7 SING N N 20
HJH N4 H8 SING N N 21
HJH O1 H11 SING N N 22
HJH O3 H10 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HJH InChI InChI 1.03 InChI=1S/C6H10N4O3/c1-10-8-4(5(11)9-10)2-3(7)6(12)13/h3H,2,7H2,1H3,(H,9,11)(H,12,13)/t3-/m0/s1
HJH InChIKey InChI 1.03 INIGHNGDJJNUCU-VKHMYHEASA-N
HJH SMILES_CANONICAL CACTVS 3.385 Cn1nc(O)c(C[C@H](N)C(O)=O)n1
HJH SMILES CACTVS 3.385 Cn1nc(O)c(C[CH](N)C(O)=O)n1
HJH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cn1nc(c(n1)O)C[C@@H](C(=O)O)N
HJH SMILES "OpenEye OEToolkits" 2.0.6 Cn1nc(c(n1)O)CC(C(=O)O)N
#
_pdbx_chem_comp_identifier.comp_id HJH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-(2-methyl-5-oxidanyl-1,2,3-triazol-4-yl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HJH 'Create component' 2018-12-10 EBI
HJH 'Initial release' 2019-04-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HJH N1 N 6.395 -3.649 1
HJH N3 N 7.145 -1.341 2
HJH C4 C 5.181 -2.768 3
HJH C5 C 9.035 -3.231 4
HJH C6 C 4.492 2.456 5
HJH C1 C 5.373 1.243 6
HJH C2 C 4.763 -0.127 7
HJH C3 C 5.645 -1.341 8
HJH N2 N 7.609 -2.768 9
HJH N4 N 6.865 1.400 10
HJH O1 O 3.000 2.300 11
HJH O2 O 5.102 3.827 12
HJH O3 O 3.755 -3.231 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HJH O2 C6 DOUBLE NONE 1
HJH O1 C6 SINGLE NONE 2
HJH C6 C1 SINGLE NONE 3
HJH C1 N4 SINGLE BEGINWEDGE 4
HJH C1 C2 SINGLE NONE 5
HJH C2 C3 SINGLE NONE 6
HJH C3 N3 DOUBLE NONE 7
HJH C3 C4 SINGLE NONE 8
HJH N3 N2 SINGLE NONE 9
HJH O3 C4 SINGLE NONE 10
HJH C4 N1 DOUBLE NONE 11
HJH N2 N1 SINGLE NONE 12
HJH N2 C5 SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HJH MurckoScaffold S1 scaffold 'c1cn[nH]n1' InChI=1S/C2H3N3/c1-2-4-5-3-1/h1-2H,(H,3,4,5) QWENRTYMTSOGBR-UHFFFAOYSA-N
HJH peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HJH N1 S1 1
HJH N3 S1 1
HJH C4 S1 1
HJH C3 S1 1
HJH N2 S1 1
HJH O2 F1 1
HJH C6 F1 1
HJH C1 F1 1
HJH N4 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HJH
_pdbe_chem_comp_rdkit_properties.exactmw 186.075
_pdbe_chem_comp_rdkit_properties.amw 186.171
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 88.116
_pdbe_chem_comp_rdkit_properties.tpsa 114.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.042
_pdbe_chem_comp_rdkit_properties.CrippenMR 41.107
_pdbe_chem_comp_rdkit_properties.chi0v 6.014
_pdbe_chem_comp_rdkit_properties.chi1v 2.907
_pdbe_chem_comp_rdkit_properties.chi2v 1.013
_pdbe_chem_comp_rdkit_properties.chi3v 1.013
_pdbe_chem_comp_rdkit_properties.chi4v 0.535
_pdbe_chem_comp_rdkit_properties.chi0n 16.014
_pdbe_chem_comp_rdkit_properties.chi1n 7.618
_pdbe_chem_comp_rdkit_properties.chi2n 1.013
_pdbe_chem_comp_rdkit_properties.chi3n 1.013
_pdbe_chem_comp_rdkit_properties.chi4n 0.535
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.630
_pdbe_chem_comp_rdkit_properties.kappa1 2.677
_pdbe_chem_comp_rdkit_properties.kappa2 3.398
_pdbe_chem_comp_rdkit_properties.kappa3 2.153
_pdbe_chem_comp_rdkit_properties.Phi 0.700
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HJH UniChem PDBe HJH
HJH UniChem ZINC ZINC000653788008
HJH UniChem PubChem 137796785
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HJH N1 2.487 -1.262 0.308 ETKDGv3 1
HJH N3 1.443 0.792 0.342 ETKDGv3 2
HJH C4 1.242 -1.422 0.602 ETKDGv3 3
HJH C5 3.833 0.727 -0.435 ETKDGv3 4
HJH C6 -3.173 -0.030 -0.120 ETKDGv3 5
HJH C1 -1.708 -0.157 -0.419 ETKDGv3 6
HJH C2 -0.884 0.148 0.848 ETKDGv3 7
HJH C3 0.576 -0.120 0.636 ETKDGv3 8
HJH N2 2.657 0.119 0.166 ETKDGv3 9
HJH N4 -1.360 0.737 -1.527 ETKDGv3 10
HJH O1 -3.723 1.219 0.157 ETKDGv3 11
HJH O2 -3.906 -1.055 -0.100 ETKDGv3 12
HJH O3 0.660 -2.664 0.830 ETKDGv3 13
HJH H4 3.924 1.781 -0.099 ETKDGv3 14
HJH H6 4.742 0.170 -0.128 ETKDGv3 15
HJH H5 3.740 0.700 -1.540 ETKDGv3 16
HJH H1 -1.507 -1.207 -0.734 ETKDGv3 17
HJH H3 -1.238 -0.491 1.686 ETKDGv3 18
HJH H2 -1.026 1.208 1.155 ETKDGv3 19
HJH H7 -0.397 0.505 -1.862 ETKDGv3 20
HJH H8 -1.347 1.728 -1.190 ETKDGv3 21
HJH H11 -4.709 1.318 0.368 ETKDGv3 22
HJH H10 -0.324 -2.745 1.053 ETKDGv3 23
#