data_HKG
#
_chem_comp.id HKG
_chem_comp.name
;1-{4-[5-({3-[(2-methylpyridin-3-yl)oxy]-5-[(pyridin-2-yl)sulfanyl]pyridin-2-yl}amino)-1,2,4-thiadiazol-3-yl]piperidin-1
-yl}ethan-1-one
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H25 N7 O2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms AR453588
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-07-09
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 519.642
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HKG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6E0I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HKG C18 C1 C 0 1 Y N N N N N 8.193 -0.150 -22.711 3.286 -0.343 0.013 C18 HKG 1
HKG N5 N1 N 0 1 Y N N N N N 8.523 3.388 -19.377 -1.329 -0.815 -0.816 N5 HKG 2
HKG C13 C2 C 0 1 Y N N N N N 6.511 -0.058 -13.074 -1.720 5.670 -0.819 C13 HKG 3
HKG C12 C3 C 0 1 Y N N N N N 7.754 -0.002 -13.723 -1.643 4.522 -1.585 C12 HKG 4
HKG C16 C4 C 0 1 Y N N N N N 7.827 0.918 -20.879 1.094 0.112 0.072 C16 HKG 5
HKG C15 C5 C 0 1 Y N N N N N 5.414 0.818 -14.953 -2.261 4.464 1.067 C15 HKG 6
HKG C11 C6 C 0 1 Y N N N N N 7.807 0.482 -15.040 -1.887 3.294 -0.989 C11 HKG 7
HKG C10 C7 C 0 1 Y N N N N N 6.622 0.908 -15.665 -2.202 3.268 0.366 C10 HKG 8
HKG C22 C8 C 0 1 N N N N N N 8.432 -1.055 -25.113 5.301 -1.234 1.151 C22 HKG 9
HKG C6 C9 C 0 1 Y N N N N N 8.860 4.473 -18.635 -2.461 -1.316 -1.275 C6 HKG 10
HKG C1 C10 C 0 1 Y N N N N N 8.466 4.582 -17.299 -3.674 -0.702 -1.001 C1 HKG 11
HKG C4 C11 C 0 1 Y N N N N N 7.795 2.384 -18.812 -1.302 0.284 -0.081 C4 HKG 12
HKG C21 C12 C 0 1 N N N N N N 8.199 -1.383 -23.611 4.723 -0.056 0.363 C21 HKG 13
HKG C2 C13 C 0 1 Y N N N N N 7.708 3.558 -16.708 -3.690 0.460 -0.229 C2 HKG 14
HKG C3 C14 C 0 1 Y N N N N N 7.369 2.430 -17.474 -2.483 0.958 0.237 C3 HKG 15
HKG N7 N2 N 0 1 N N N N N N 7.455 1.258 -19.599 -0.080 0.775 0.382 N7 HKG 16
HKG S8 S1 S 0 1 N N N N N N 8.933 6.022 -16.398 -5.177 -1.381 -1.620 S8 HKG 17
HKG O9 O1 O 0 1 N N N N N N 6.616 1.384 -16.963 -2.449 2.088 0.993 O9 HKG 18
HKG N14 N3 N 0 1 Y N N N N N 5.355 0.346 -13.675 -2.016 5.610 0.464 N14 HKG 19
HKG N17 N4 N 0 1 Y N N N N N 7.719 -0.244 -21.484 2.318 0.442 0.427 N17 HKG 20
HKG N19 N5 N 0 1 Y N N N N N 8.678 0.980 -23.176 2.965 -1.372 -0.715 N19 HKG 21
HKG S20 S2 S 0 1 Y N N N N N 8.532 2.113 -21.911 1.274 -1.317 -0.873 S20 HKG 22
HKG C23 C15 C 0 1 N N N N N N 8.697 -2.302 -26.001 6.751 -0.924 1.535 C23 HKG 23
HKG N24 N6 N 0 1 N N N N N N 9.745 -3.123 -25.349 7.501 -0.586 0.318 N24 HKG 24
HKG C25 C16 C 0 1 N N N N N N 9.361 -3.652 -24.020 6.984 0.472 -0.560 C25 HKG 25
HKG C26 C17 C 0 1 N N N N N N 9.195 -2.442 -23.066 5.531 0.147 -0.921 C26 HKG 26
HKG C27 C18 C 0 1 Y N N N N N 10.054 5.479 -15.126 -5.749 -2.369 -0.278 C27 HKG 27
HKG N28 N7 N 0 1 Y N N N N N 10.590 4.225 -15.217 -4.995 -2.508 0.802 N28 HKG 28
HKG C29 C19 C 0 1 Y N N N N N 11.447 3.793 -14.246 -5.386 -3.239 1.829 C29 HKG 29
HKG C30 C20 C 0 1 Y N N N N N 11.799 4.600 -13.154 -6.603 -3.890 1.812 C30 HKG 30
HKG C31 C21 C 0 1 Y N N N N N 11.249 5.889 -13.065 -7.424 -3.770 0.698 C31 HKG 31
HKG C32 C22 C 0 1 Y N N N N N 10.364 6.339 -14.059 -6.990 -2.992 -0.361 C32 HKG 32
HKG C33 C23 C 0 1 N N N N N N 10.958 -3.379 -25.931 8.643 -1.234 0.013 C33 HKG 33
HKG C34 C24 C 0 1 N N N N N N 12.004 -4.238 -25.214 9.100 -2.394 0.859 C34 HKG 34
HKG O35 O2 O 0 1 N N N N N N 11.276 -2.942 -27.039 9.302 -0.884 -0.943 O35 HKG 35
HKG C36 C25 C 0 1 N N N N N N 4.088 1.250 -15.563 -2.595 4.450 2.537 C36 HKG 36
HKG H1 H1 H 0 1 N N N N N N 6.468 -0.434 -12.063 -1.531 6.629 -1.278 H1 HKG 37
HKG H2 H2 H 0 1 N N N N N N 8.653 -0.325 -13.219 -1.395 4.580 -2.634 H2 HKG 38
HKG H3 H3 H 0 1 N N N N N N 8.748 0.527 -15.567 -1.834 2.381 -1.563 H3 HKG 39
HKG H4 H4 H 0 1 N N N N N N 9.301 -0.385 -25.190 4.711 -1.392 2.054 H4 HKG 40
HKG H5 H5 H 0 1 N N N N N N 7.538 -0.541 -25.497 5.272 -2.132 0.535 H5 HKG 41
HKG H6 H6 H 0 1 N N N N N N 9.442 5.264 -19.084 -2.442 -2.215 -1.873 H6 HKG 42
HKG H7 H7 H 0 1 N N N N N N 7.197 -1.832 -23.542 4.775 0.848 0.971 H7 HKG 43
HKG H8 H8 H 0 1 N N N N N N 7.390 3.637 -15.679 -4.620 0.959 -0.000 H8 HKG 44
HKG H9 H9 H 0 1 N N N N N N 6.845 0.603 -19.152 -0.055 1.581 0.922 H9 HKG 45
HKG H10 H10 H 0 1 N N N N N N 9.040 -1.984 -26.997 6.774 -0.080 2.225 H10 HKG 46
HKG H11 H11 H 0 1 N N N N N N 7.773 -2.890 -26.102 7.198 -1.798 2.009 H11 HKG 47
HKG H12 H12 H 0 1 N N N N N N 8.412 -4.204 -24.095 7.025 1.430 -0.041 H12 HKG 48
HKG H13 H13 H 0 1 N N N N N N 10.146 -4.323 -23.642 7.584 0.520 -1.468 H13 HKG 49
HKG H14 H14 H 0 1 N N N N N N 8.826 -2.806 -22.096 5.500 -0.765 -1.518 H14 HKG 50
HKG H15 H15 H 0 1 N N N N N N 10.176 -1.965 -22.929 5.104 0.971 -1.492 H15 HKG 51
HKG H16 H16 H 0 1 N N N N N N 11.866 2.801 -14.321 -4.745 -3.330 2.693 H16 HKG 52
HKG H17 H17 H 0 1 N N N N N N 12.479 4.237 -12.397 -6.914 -4.487 2.657 H17 HKG 53
HKG H18 H18 H 0 1 N N N N N N 11.505 6.532 -12.236 -8.381 -4.269 0.660 H18 HKG 54
HKG H19 H19 H 0 1 N N N N N N 9.930 7.327 -14.004 -7.605 -2.874 -1.241 H19 HKG 55
HKG H20 H20 H 0 1 N N N N N N 12.903 -4.321 -25.842 8.688 -3.321 0.459 H20 HKG 56
HKG H21 H21 H 0 1 N N N N N N 12.269 -3.769 -24.255 10.189 -2.446 0.847 H21 HKG 57
HKG H22 H22 H 0 1 N N N N N N 11.591 -5.241 -25.030 8.755 -2.255 1.883 H22 HKG 58
HKG H23 H23 H 0 1 N N N N N N 3.281 1.098 -14.832 -3.673 4.541 2.665 H23 HKG 59
HKG H24 H24 H 0 1 N N N N N N 4.140 2.314 -15.836 -2.254 3.514 2.978 H24 HKG 60
HKG H25 H25 H 0 1 N N N N N N 3.886 0.650 -16.462 -2.098 5.286 3.030 H25 HKG 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HKG O35 C33 DOUB N N 1
HKG C23 N24 SING N N 2
HKG C23 C22 SING N N 3
HKG C33 N24 SING N N 4
HKG C33 C34 SING N N 5
HKG N24 C25 SING N N 6
HKG C22 C21 SING N N 7
HKG C25 C26 SING N N 8
HKG C21 C26 SING N N 9
HKG C21 C18 SING N N 10
HKG N19 C18 DOUB Y N 11
HKG N19 S20 SING Y N 12
HKG C18 N17 SING Y N 13
HKG S20 C16 SING Y N 14
HKG N17 C16 DOUB Y N 15
HKG C16 N7 SING N N 16
HKG N7 C4 SING N N 17
HKG N5 C4 DOUB Y N 18
HKG N5 C6 SING Y N 19
HKG C4 C3 SING Y N 20
HKG C6 C1 DOUB Y N 21
HKG C3 O9 SING N N 22
HKG C3 C2 DOUB Y N 23
HKG C1 C2 SING Y N 24
HKG C1 S8 SING N N 25
HKG O9 C10 SING N N 26
HKG S8 C27 SING N N 27
HKG C10 C11 DOUB Y N 28
HKG C10 C15 SING Y N 29
HKG C36 C15 SING N N 30
HKG N28 C27 DOUB Y N 31
HKG N28 C29 SING Y N 32
HKG C27 C32 SING Y N 33
HKG C11 C12 SING Y N 34
HKG C15 N14 DOUB Y N 35
HKG C29 C30 DOUB Y N 36
HKG C32 C31 DOUB Y N 37
HKG C12 C13 DOUB Y N 38
HKG N14 C13 SING Y N 39
HKG C30 C31 SING Y N 40
HKG C13 H1 SING N N 41
HKG C12 H2 SING N N 42
HKG C11 H3 SING N N 43
HKG C22 H4 SING N N 44
HKG C22 H5 SING N N 45
HKG C6 H6 SING N N 46
HKG C21 H7 SING N N 47
HKG C2 H8 SING N N 48
HKG N7 H9 SING N N 49
HKG C23 H10 SING N N 50
HKG C23 H11 SING N N 51
HKG C25 H12 SING N N 52
HKG C25 H13 SING N N 53
HKG C26 H14 SING N N 54
HKG C26 H15 SING N N 55
HKG C29 H16 SING N N 56
HKG C30 H17 SING N N 57
HKG C31 H18 SING N N 58
HKG C32 H19 SING N N 59
HKG C34 H20 SING N N 60
HKG C34 H21 SING N N 61
HKG C34 H22 SING N N 62
HKG C36 H23 SING N N 63
HKG C36 H24 SING N N 64
HKG C36 H25 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HKG SMILES ACDLabs 12.01 c4(nc(Nc1ncc(cc1Oc2c(nccc2)C)Sc3ccccn3)sn4)C5CCN(CC5)C(C)=O
HKG InChI InChI 1.03 InChI=1S/C25H25N7O2S2/c1-16-20(6-5-11-26-16)34-21-14-19(35-22-7-3-4-10-27-22)15-28-24(21)30-25-29-23(31-36-25)18-8-12-32(13-9-18)17(2)33/h3-7,10-11,14-15,18H,8-9,12-13H2,1-2H3,(H,28,29,30,31)
HKG InChIKey InChI 1.03 WITGITFYEMHCEZ-UHFFFAOYSA-N
HKG SMILES_CANONICAL CACTVS 3.385 CC(=O)N1CCC(CC1)c2nsc(Nc3ncc(Sc4ccccn4)cc3Oc5cccnc5C)n2
HKG SMILES CACTVS 3.385 CC(=O)N1CCC(CC1)c2nsc(Nc3ncc(Sc4ccccn4)cc3Oc5cccnc5C)n2
HKG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1c(cccn1)Oc2cc(cnc2Nc3nc(ns3)C4CCN(CC4)C(=O)C)Sc5ccccn5
HKG SMILES "OpenEye OEToolkits" 2.0.6 Cc1c(cccn1)Oc2cc(cnc2Nc3nc(ns3)C4CCN(CC4)C(=O)C)Sc5ccccn5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HKG "SYSTEMATIC NAME" ACDLabs 12.01 1-{4-[5-({3-[(2-methylpyridin-3-yl)oxy]-5-[(pyridin-2-yl)sulfanyl]pyridin-2-yl}amino)-1,2,4-thiadiazol-3-yl]piperidin-1-yl}ethan-1-one
HKG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 1-[4-[5-[[3-(2-methylpyridin-3-yl)oxy-5-pyridin-2-ylsulfanyl-pyridin-2-yl]amino]-1,2,4-thiadiazol-3-yl]piperidin-1-yl]ethanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HKG 'Create component' 2018-07-09 RCSB
HKG 'Initial release' 2019-07-10 RCSB
HKG 'Modify synonyms' 2020-01-15 RCSB
HKG 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HKG
_pdbx_chem_comp_synonyms.name AR453588
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id HKG
_pdbe_chem_comp_synonyms.name AR453588
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HKG C18 C 13.168 -4.478 1
HKG N5 N 10.794 -0.973 2
HKG C13 C 3.000 0.527 3
HKG C12 C 3.000 -0.973 4
HKG C16 C 10.794 -3.973 5
HKG C15 C 5.598 0.527 6
HKG C11 C 4.299 -1.723 7
HKG C10 C 5.598 -0.973 8
HKG C22 C 15.542 -5.535 9
HKG C6 C 10.794 0.527 10
HKG C1 C 9.495 1.277 11
HKG C4 C 9.495 -1.723 12
HKG C21 C 14.660 -4.321 13
HKG C2 C 8.196 0.527 14
HKG C3 C 8.196 -0.973 15
HKG N7 N 9.495 -3.223 16
HKG S8 S 9.495 2.777 17
HKG O9 O 6.897 -1.723 18
HKG N14 N 4.299 1.277 19
HKG N17 N 12.165 -3.363 20
HKG N19 N 12.418 -5.777 21
HKG S20 S 10.951 -5.465 22
HKG C23 C 17.034 -5.378 23
HKG N24 N 17.644 -4.007 24
HKG C25 C 16.762 -2.794 25
HKG C26 C 15.270 -2.951 26
HKG C27 C 10.794 3.527 27
HKG N28 N 12.093 2.777 28
HKG C29 C 13.392 3.527 29
HKG C30 C 13.392 5.027 30
HKG C31 C 12.093 5.777 31
HKG C32 C 10.794 5.027 32
HKG C33 C 19.135 -3.851 33
HKG C34 C 20.017 -5.064 34
HKG O35 O 19.746 -2.480 35
HKG C36 C 6.897 1.277 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HKG O35 C33 DOUBLE NONE 1
HKG C23 N24 SINGLE NONE 2
HKG C23 C22 SINGLE NONE 3
HKG C33 N24 SINGLE NONE 4
HKG C33 C34 SINGLE NONE 5
HKG N24 C25 SINGLE NONE 6
HKG C22 C21 SINGLE NONE 7
HKG C25 C26 SINGLE NONE 8
HKG C21 C26 SINGLE NONE 9
HKG C21 C18 SINGLE NONE 10
HKG N19 C18 DOUBLE NONE 11
HKG N19 S20 SINGLE NONE 12
HKG C18 N17 SINGLE NONE 13
HKG S20 C16 SINGLE NONE 14
HKG N17 C16 DOUBLE NONE 15
HKG C16 N7 SINGLE NONE 16
HKG N7 C4 SINGLE NONE 17
HKG N5 C4 DOUBLE NONE 18
HKG N5 C6 SINGLE NONE 19
HKG C4 C3 SINGLE NONE 20
HKG C6 C1 DOUBLE NONE 21
HKG C3 O9 SINGLE NONE 22
HKG C3 C2 DOUBLE NONE 23
HKG C1 C2 SINGLE NONE 24
HKG C1 S8 SINGLE NONE 25
HKG O9 C10 SINGLE NONE 26
HKG S8 C27 SINGLE NONE 27
HKG C10 C11 DOUBLE NONE 28
HKG C10 C15 SINGLE NONE 29
HKG C36 C15 SINGLE NONE 30
HKG N28 C27 DOUBLE NONE 31
HKG N28 C29 SINGLE NONE 32
HKG C27 C32 SINGLE NONE 33
HKG C11 C12 SINGLE NONE 34
HKG C15 N14 DOUBLE NONE 35
HKG C29 C30 DOUBLE NONE 36
HKG C32 C31 DOUBLE NONE 37
HKG C12 C13 DOUBLE NONE 38
HKG N14 C13 SINGLE NONE 39
HKG C30 C31 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HKG MurckoScaffold S1 scaffold c1ccc(Sc2cnc(Nc3nc(C4CCNCC4)ns3)c(Oc3cccnc3)c2)nc1 InChI=1S/C22H21N7OS2/c1-2-9-25-19(5-1)31-17-12-18(30-16-4-3-8-24-13-16)21(26-14-17)28-22-27-20(29-32-22)15-6-10-23-11-7-15/h1-5,8-9,12-15,23H,6-7,10-11H2,(H,26,27,28,29) QUUZFCMBNXDMDE-UHFFFAOYSA-N
HKG amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HKG pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HKG C18 S1 1
HKG N5 S1 1
HKG C13 S1 1
HKG C12 S1 1
HKG C16 S1 1
HKG C15 S1 1
HKG C11 S1 1
HKG C10 S1 1
HKG C22 S1 1
HKG C6 S1 1
HKG C1 S1 1
HKG C4 S1 1
HKG C21 S1 1
HKG C2 S1 1
HKG C3 S1 1
HKG N7 S1 1
HKG S8 S1 1
HKG O9 S1 1
HKG N14 S1 1
HKG N17 S1 1
HKG N19 S1 1
HKG S20 S1 1
HKG C23 S1 1
HKG N24 S1 1
HKG C25 S1 1
HKG C26 S1 1
HKG C27 S1 1
HKG N28 S1 1
HKG C29 S1 1
HKG C30 S1 1
HKG C31 S1 1
HKG C32 S1 1
HKG N24 F1 1
HKG C33 F1 1
HKG O35 F1 1
HKG C34 F1 1
HKG C13 F2 1
HKG C12 F2 1
HKG C11 F2 1
HKG C10 F2 1
HKG C15 F2 1
HKG N14 F2 1
HKG C6 F2 2
HKG C1 F2 2
HKG C2 F2 2
HKG C3 F2 2
HKG C4 F2 2
HKG N5 F2 2
HKG C27 F2 3
HKG C32 F2 3
HKG C31 F2 3
HKG C30 F2 3
HKG C29 F2 3
HKG N28 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id HKG
_pdbe_chem_comp_rdkit_properties.exactmw 519.151
_pdbe_chem_comp_rdkit_properties.amw 519.656
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.280
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.286
_pdbe_chem_comp_rdkit_properties.tpsa 106.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.433
_pdbe_chem_comp_rdkit_properties.CrippenMR 136.806
_pdbe_chem_comp_rdkit_properties.chi0v 18.896
_pdbe_chem_comp_rdkit_properties.chi1v 10.878
_pdbe_chem_comp_rdkit_properties.chi2v 5.180
_pdbe_chem_comp_rdkit_properties.chi3v 5.180
_pdbe_chem_comp_rdkit_properties.chi4v 3.481
_pdbe_chem_comp_rdkit_properties.chi0n 42.263
_pdbe_chem_comp_rdkit_properties.chi1n 21.735
_pdbe_chem_comp_rdkit_properties.chi2n 3.785
_pdbe_chem_comp_rdkit_properties.chi3n 3.785
_pdbe_chem_comp_rdkit_properties.chi4n 2.305
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.570
_pdbe_chem_comp_rdkit_properties.kappa1 8.489
_pdbe_chem_comp_rdkit_properties.kappa2 11.003
_pdbe_chem_comp_rdkit_properties.kappa3 5.797
_pdbe_chem_comp_rdkit_properties.Phi 2.595
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HKG UniChem ChEMBL CHEMBL4644628
HKG UniChem PDBe HKG
HKG UniChem SureChEMBL SCHEMBL2661764
HKG UniChem PubChem 59291641
HKG UniChem BindingDb 50540186
HKG UniChem MedChemExpress HY-133127
HKG UniChem 'Probes And Drugs' PD157469
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HKG C18 3.018 0.665 -0.812 ETKDGv3 1
HKG N5 -1.972 0.698 -1.296 ETKDGv3 2
HKG C13 -5.225 -5.026 2.263 ETKDGv3 3
HKG C12 -4.655 -4.260 3.198 ETKDGv3 4
HKG C16 0.807 0.139 -0.551 ETKDGv3 5
HKG C15 -4.040 -3.933 0.486 ETKDGv3 6
HKG C11 -3.701 -3.213 2.791 ETKDGv3 7
HKG C10 -3.423 -3.023 1.495 ETKDGv3 8
HKG C22 5.165 0.332 -2.054 ETKDGv3 9
HKG C6 -3.316 1.075 -1.636 ETKDGv3 10
HKG C1 -4.350 0.445 -1.068 ETKDGv3 11
HKG C4 -1.707 -0.249 -0.440 ETKDGv3 12
HKG C21 4.484 0.359 -0.677 ETKDGv3 13
HKG C2 -4.091 -0.638 -0.100 ETKDGv3 14
HKG C3 -2.827 -0.987 0.202 ETKDGv3 15
HKG N7 -0.347 -0.609 -0.143 ETKDGv3 16
HKG S8 -6.034 0.906 -1.471 ETKDGv3 17
HKG O9 -2.540 -1.998 1.132 ETKDGv3 18
HKG N14 -4.885 -4.846 0.878 ETKDGv3 19
HKG N17 2.017 -0.277 -0.353 ETKDGv3 20
HKG N19 2.599 1.784 -1.338 ETKDGv3 21
HKG S20 0.844 1.734 -1.298 ETKDGv3 22
HKG C23 6.657 0.018 -1.913 ETKDGv3 23
HKG N24 7.295 0.934 -0.952 ETKDGv3 24
HKG C25 6.668 1.083 0.372 ETKDGv3 25
HKG C26 5.172 1.387 0.235 ETKDGv3 26
HKG C27 -6.126 2.077 -0.121 ETKDGv3 27
HKG N28 -5.784 3.319 -0.316 ETKDGv3 28
HKG C29 -5.836 4.290 0.744 ETKDGv3 29
HKG C30 -6.243 3.927 1.967 ETKDGv3 30
HKG C31 -6.638 2.526 2.211 ETKDGv3 31
HKG C32 -6.585 1.638 1.213 ETKDGv3 32
HKG C33 8.650 1.381 -1.191 ETKDGv3 33
HKG C34 9.535 1.857 -0.078 ETKDGv3 34
HKG O35 9.109 1.398 -2.366 ETKDGv3 35
HKG C36 -3.706 -3.833 -0.971 ETKDGv3 36
HKG H1 -5.932 -5.795 2.546 ETKDGv3 37
HKG H2 -4.899 -4.398 4.243 ETKDGv3 38
HKG H3 -3.252 -2.578 3.544 ETKDGv3 39
HKG H4 4.689 -0.443 -2.694 ETKDGv3 40
HKG H5 5.050 1.318 -2.558 ETKDGv3 41
HKG H6 -3.482 1.872 -2.348 ETKDGv3 42
HKG H7 4.586 -0.648 -0.213 ETKDGv3 43
HKG H8 -4.931 -1.131 0.371 ETKDGv3 44
HKG H9 -0.174 -1.480 0.408 ETKDGv3 45
HKG H10 7.121 0.096 -2.919 ETKDGv3 46
HKG H11 6.787 -1.028 -1.560 ETKDGv3 47
HKG H12 7.124 1.918 0.943 ETKDGv3 48
HKG H13 6.811 0.146 0.953 ETKDGv3 49
HKG H14 5.050 2.411 -0.184 ETKDGv3 50
HKG H15 4.704 1.368 1.243 ETKDGv3 51
HKG H16 -5.544 5.314 0.550 ETKDGv3 52
HKG H17 -6.284 4.653 2.769 ETKDGv3 53
HKG H18 -6.968 2.221 3.196 ETKDGv3 54
HKG H19 -6.871 0.607 1.383 ETKDGv3 55
HKG H20 9.220 2.872 0.243 ETKDGv3 56
HKG H21 10.592 1.905 -0.417 ETKDGv3 57
HKG H22 9.479 1.156 0.781 ETKDGv3 58
HKG H23 -2.650 -3.520 -1.108 ETKDGv3 59
HKG H24 -4.379 -3.100 -1.462 ETKDGv3 60
HKG H25 -3.837 -4.820 -1.464 ETKDGv3 61
#