data_HKO
#
_chem_comp.id HKO
_chem_comp.name
N-[(1R,2R,3R,4S,5R)-4-[(2R,3R,6S)-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[[(3S,4S,5S,6R)-5-(methylamino)-4,6-bis(oxidanyl)-2-oxabicyclo[4.1.0]heptan-3-yl]oxy]-3-oxidanyl-cyclohexyl]pyridine-3-sulfonamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H40 N6 O9 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-01-15
_chem_comp.pdbx_modified_date 2022-01-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 588.674
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HKO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7DUI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HKO C2 C1 C 0 1 Y N N N N N 196.692 92.809 -13.859 3.845 3.380 1.303 C2 HKO 1
HKO C3 C2 C 0 1 Y N N N N N 198.008 93.016 -14.250 5.044 3.282 1.993 C3 HKO 2
HKO C4 C3 C 0 1 Y N N N N N 198.291 93.309 -15.575 6.161 2.798 1.337 C4 HKO 3
HKO C5 C4 C 0 1 Y N N N N N 196.051 93.207 -16.138 4.971 2.507 -0.613 C5 HKO 4
HKO C1 C5 C 0 1 Y N N N N N 195.704 92.909 -14.831 3.813 2.981 -0.024 C1 HKO 5
HKO O1 O1 O 0 1 N N N N N N 193.004 93.666 -15.281 2.693 3.144 -2.317 O1 HKO 6
HKO C11 C6 C 0 1 N N R N N N 189.575 87.181 -11.354 1.612 -3.990 0.223 C11 HKO 7
HKO C12 C7 C 0 1 N N R N N N 192.615 90.581 -13.614 1.035 1.239 0.570 C12 HKO 8
HKO C13 C8 C 0 1 N N S N N N 191.295 89.821 -16.372 -2.595 1.022 0.155 C13 HKO 9
HKO C21 C9 C 0 1 N N R N N N 188.168 87.241 -10.749 2.115 -5.080 -0.727 C21 HKO 10
HKO C22 C10 C 0 1 N N N N N N 193.282 89.395 -12.887 2.072 0.349 1.257 C22 HKO 11
HKO C23 C11 C 0 1 N N S N N N 191.004 90.659 -17.649 -3.529 1.752 -0.789 C23 HKO 12
HKO C31 C12 C 0 1 N N N N N N 188.233 87.337 -9.283 0.974 -5.503 -1.657 C31 HKO 13
HKO C32 C13 C 0 1 N N R N N N 192.443 88.835 -11.724 2.311 -0.903 0.410 C32 HKO 14
HKO C33 C14 C 0 1 N N S N N N 189.706 90.405 -18.342 -4.990 1.484 -0.475 C33 HKO 15
HKO C41 C15 C 0 1 N N N N N N 189.056 86.281 -8.682 -0.213 -5.973 -0.810 C41 HKO 16
HKO C42 C16 C 0 1 N N S N N N 190.940 89.090 -11.911 0.998 -1.673 0.257 C42 HKO 17
HKO C43 C17 C 0 1 N N R N N N 189.262 88.985 -18.240 -5.271 1.566 1.015 C43 HKO 18
HKO C51 C18 C 0 1 N N S N N N 190.422 86.130 -9.348 -0.626 -4.848 0.143 C51 HKO 19
HKO C52 C19 C 0 1 N N R N N N 190.594 88.984 -13.409 -0.039 -0.783 -0.430 C52 HKO 20
HKO C53 C20 C 0 1 N N S N N N 189.513 88.173 -16.949 -4.107 1.462 1.993 C53 HKO 21
HKO C61 C21 C 0 1 N N N N N N 191.081 84.880 -8.841 -1.772 -5.330 1.034 C61 HKO 22
HKO C62 C22 C 0 1 N N R N N N 191.128 90.300 -14.004 -0.278 0.469 0.417 C62 HKO 23
HKO C83 C23 C 0 1 N N N N N N 187.937 89.323 -17.548 -4.838 2.799 1.800 C83 HKO 24
HKO C93 C24 C 0 1 N N N N N N 189.061 92.770 -18.335 -6.053 2.078 -2.568 C93 HKO 25
HKO N1 N1 N 0 1 Y N N N N N 197.317 93.393 -16.461 6.095 2.433 0.072 N1 HKO 26
HKO N12 N2 N 0 1 N N N N N N 193.491 91.036 -14.698 1.528 1.632 -0.753 N12 HKO 27
HKO N21 N3 N 0 1 N N N N N N 187.437 88.439 -11.276 3.232 -4.558 -1.526 N21 HKO 28
HKO N32 N4 N 0 1 N N N N N N 192.877 89.445 -10.471 3.306 -1.758 1.070 N32 HKO 29
HKO N33 N5 N 0 1 N N N N N N 188.674 91.445 -17.885 -5.819 2.476 -1.173 N33 HKO 30
HKO N61 N6 N 0 1 N N N N N N 192.443 85.139 -8.409 -2.191 -4.240 1.926 N61 HKO 31
HKO O11 O2 O 0 1 N N N N N N 190.203 88.341 -10.954 1.221 -2.842 -0.534 O11 HKO 32
HKO O2 O3 O 0 1 N N N N N N 193.766 92.984 -12.784 1.513 4.060 -0.312 O2 HKO 33
HKO O23 O4 O 0 1 N N N N N N 192.078 90.472 -18.579 -3.260 1.329 -2.127 O23 HKO 34
HKO O43 O5 O 0 1 N N N N N N 188.420 88.470 -19.293 -6.489 0.945 1.431 O43 HKO 35
HKO O51 O6 O 0 1 N N N N N N 190.316 86.057 -10.820 0.489 -4.482 0.958 O51 HKO 36
HKO O52 O7 O 0 1 N N N N N N 189.216 88.926 -13.689 -1.265 -1.503 -0.573 O52 HKO 37
HKO O53 O8 O 0 1 N N N N N N 190.865 88.410 -16.408 -2.774 1.399 1.505 O53 HKO 38
HKO O62 O9 O 0 1 N N N N N N 190.706 90.516 -15.349 -1.247 1.301 -0.226 O62 HKO 39
HKO S1 S1 S 0 1 N N N N N N 193.959 92.653 -14.391 2.316 3.075 -0.948 S1 HKO 40
HKO H1 H1 H 0 1 N N N N N N 196.444 92.578 -12.833 2.957 3.754 1.789 H1 HKO 41
HKO H2 H2 H 0 1 N N N N N N 198.807 92.949 -13.526 5.105 3.580 3.029 H2 HKO 42
HKO H3 H3 H 0 1 N N N N N N 199.314 93.469 -15.883 7.098 2.719 1.867 H3 HKO 43
HKO H4 H4 H 0 1 N N N N N N 195.284 93.287 -16.894 4.954 2.194 -1.647 H4 HKO 44
HKO H5 H5 H 0 1 N N N N N N 189.501 87.113 -12.449 2.408 -3.715 0.915 H5 HKO 45
HKO H6 H6 H 0 1 N N N N N N 192.577 91.398 -12.878 0.864 2.131 1.173 H6 HKO 46
HKO H7 H7 H 0 1 N N N N N N 192.386 89.832 -16.230 -2.771 -0.050 0.064 H7 HKO 47
HKO H8 H8 H 0 1 N N N N N N 187.622 86.330 -11.034 2.452 -5.941 -0.148 H8 HKO 48
HKO H9 H9 H 0 1 N N N N N N 193.447 88.588 -13.616 3.007 0.898 1.366 H9 HKO 49
HKO H10 H10 H 0 1 N N N N N N 194.250 89.732 -12.487 1.705 0.057 2.241 H10 HKO 50
HKO H11 H11 H 0 1 N N N N N N 191.005 91.714 -17.337 -3.342 2.823 -0.713 H11 HKO 51
HKO H12 H12 H 0 1 N N N N N N 188.661 88.314 -9.013 0.671 -4.655 -2.271 H12 HKO 52
HKO H13 H13 H 0 1 N N N N N N 187.212 87.260 -8.880 1.309 -6.318 -2.298 H13 HKO 53
HKO H14 H14 H 0 1 N N N N N N 192.605 87.748 -11.674 2.678 -0.611 -0.574 H14 HKO 54
HKO H15 H15 H 0 1 N N N N N N 189.880 90.601 -19.410 -5.253 0.489 -0.832 H15 HKO 55
HKO H16 H16 H 0 1 N N N N N N 188.517 85.326 -8.769 -1.049 -6.223 -1.462 H16 HKO 56
HKO H17 H17 H 0 1 N N N N N N 189.210 86.520 -7.619 0.076 -6.852 -0.234 H17 HKO 57
HKO H18 H18 H 0 1 N N N N N N 190.794 90.150 -11.657 0.631 -1.965 1.241 H18 HKO 58
HKO H19 H19 H 0 1 N N N N N N 191.042 86.996 -9.073 -0.954 -3.984 -0.435 H19 HKO 59
HKO H20 H20 H 0 1 N N N N N N 191.132 88.133 -13.852 0.328 -0.491 -1.414 H20 HKO 60
HKO H21 H21 H 0 1 N N N N N N 189.210 87.118 -17.015 -4.288 0.938 2.932 H21 HKO 61
HKO H23 H23 H 0 1 N N N N N N 190.503 84.490 -7.990 -2.614 -5.634 0.412 H23 HKO 62
HKO H24 H24 H 0 1 N N N N N N 191.097 84.131 -9.647 -1.437 -6.178 1.631 H24 HKO 63
HKO H25 H25 H 0 1 N N N N N N 190.582 91.064 -13.432 -0.645 0.177 1.401 H25 HKO 64
HKO H26 H26 H 0 1 N N N N N N 187.748 90.316 -17.114 -4.316 3.585 1.255 H26 HKO 65
HKO H27 H27 H 0 1 N N N N N N 186.985 88.877 -17.871 -5.490 3.137 2.606 H27 HKO 66
HKO H29 H29 H 0 1 N N N N N N 188.313 93.504 -18.001 -6.669 2.830 -3.062 H29 HKO 67
HKO H30 H30 H 0 1 N N N N N N 190.043 93.028 -17.912 -5.098 1.994 -3.087 H30 HKO 68
HKO H31 H31 H 0 1 N N N N N N 189.120 92.781 -19.433 -6.565 1.116 -2.591 H31 HKO 69
HKO H32 H32 H 0 1 N N N N N N 193.001 90.988 -15.568 1.393 1.046 -1.514 H32 HKO 70
HKO H33 H33 H 0 1 N N N N N N 186.520 88.473 -10.878 3.581 -5.260 -2.161 H33 HKO 71
HKO H34 H34 H 0 1 N N N N N N 187.937 89.269 -11.031 2.961 -3.723 -2.024 H34 HKO 72
HKO H36 H36 H 0 1 N N N N N N 192.332 89.081 -9.716 4.183 -1.271 1.183 H36 HKO 73
HKO H37 H37 H 0 1 N N N N N N 193.843 89.236 -10.316 2.963 -2.094 1.957 H37 HKO 74
HKO H39 H39 H 0 1 N N N N N N 187.780 91.214 -18.269 -6.691 2.624 -0.688 H39 HKO 75
HKO H41 H41 H 0 1 N N N N N N 192.855 84.290 -8.077 -2.536 -3.453 1.397 H41 HKO 76
HKO H42 H42 H 0 1 N N N N N N 192.976 85.490 -9.179 -2.881 -4.560 2.589 H42 HKO 77
HKO H44 H44 H 0 1 N N N N N N 192.907 90.632 -18.143 -2.355 1.505 -2.420 H44 HKO 78
HKO H45 H45 H 0 1 N N N N N N 188.207 87.562 -19.113 -7.206 1.015 0.787 H45 HKO 79
HKO H46 H46 H 0 1 N N N N N N 188.854 88.123 -13.334 -1.212 -2.253 -1.180 H46 HKO 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HKO O43 C43 SING N N 1
HKO O23 C23 SING N N 2
HKO C33 C43 SING N N 3
HKO C33 N33 SING N N 4
HKO C33 C23 SING N N 5
HKO C93 N33 SING N N 6
HKO C43 C83 SING N N 7
HKO C43 C53 SING N N 8
HKO C23 C13 SING N N 9
HKO C53 O53 SING N N 10
HKO N1 C5 DOUB Y N 11
HKO N1 C4 SING Y N 12
HKO O53 C13 SING N N 13
HKO C13 O62 SING N N 14
HKO C5 C1 SING Y N 15
HKO C4 C3 DOUB Y N 16
HKO O62 C62 SING N N 17
HKO O1 S1 DOUB N N 18
HKO C1 S1 SING N N 19
HKO C1 C2 DOUB Y N 20
HKO N12 S1 SING N N 21
HKO N12 C12 SING N N 22
HKO S1 O2 DOUB N N 23
HKO C3 C2 SING Y N 24
HKO C62 C12 SING N N 25
HKO C62 C52 SING N N 26
HKO O52 C52 SING N N 27
HKO C12 C22 SING N N 28
HKO C52 C42 SING N N 29
HKO C22 C32 SING N N 30
HKO C42 C32 SING N N 31
HKO C42 O11 SING N N 32
HKO C32 N32 SING N N 33
HKO C11 O11 SING N N 34
HKO C11 O51 SING N N 35
HKO C11 C21 SING N N 36
HKO N21 C21 SING N N 37
HKO O51 C51 SING N N 38
HKO C21 C31 SING N N 39
HKO C51 C61 SING N N 40
HKO C51 C41 SING N N 41
HKO C31 C41 SING N N 42
HKO C61 N61 SING N N 43
HKO C2 H1 SING N N 44
HKO C3 H2 SING N N 45
HKO C4 H3 SING N N 46
HKO C5 H4 SING N N 47
HKO C11 H5 SING N N 48
HKO C12 H6 SING N N 49
HKO C13 H7 SING N N 50
HKO C21 H8 SING N N 51
HKO C22 H9 SING N N 52
HKO C22 H10 SING N N 53
HKO C23 H11 SING N N 54
HKO C31 H12 SING N N 55
HKO C31 H13 SING N N 56
HKO C32 H14 SING N N 57
HKO C33 H15 SING N N 58
HKO C41 H16 SING N N 59
HKO C41 H17 SING N N 60
HKO C42 H18 SING N N 61
HKO C51 H19 SING N N 62
HKO C52 H20 SING N N 63
HKO C53 H21 SING N N 64
HKO C61 H23 SING N N 65
HKO C61 H24 SING N N 66
HKO C62 H25 SING N N 67
HKO C83 H26 SING N N 68
HKO C83 H27 SING N N 69
HKO C93 H29 SING N N 70
HKO C93 H30 SING N N 71
HKO C93 H31 SING N N 72
HKO N12 H32 SING N N 73
HKO N21 H33 SING N N 74
HKO N21 H34 SING N N 75
HKO N32 H36 SING N N 76
HKO N32 H37 SING N N 77
HKO N33 H39 SING N N 78
HKO N61 H41 SING N N 79
HKO N61 H42 SING N N 80
HKO O23 H44 SING N N 81
HKO O43 H45 SING N N 82
HKO O52 H46 SING N N 83
HKO C53 C83 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HKO InChI InChI 1.03 InChI=1S/C24H40N6O9S/c1-28-21-18(32)23(37-16-8-24(16,21)33)39-20-15(30-40(34,35)12-3-2-6-29-10-12)7-14(27)19(17(20)31)38-22-13(26)5-4-11(9-25)36-22/h2-3,6,10-11,13-23,28,30-33H,4-5,7-9,25-27H2,1H3/t11-,13+,14+,15+,16-,17+,18-,19-,20+,21-,22+,23+,24-/m0/s1
HKO InChIKey InChI 1.03 PLNNWXHFRHQFIG-QUYPYEIISA-N
HKO SMILES_CANONICAL CACTVS 3.385 CN[C@H]1[C@H](O)[C@H](O[C@H]2C[C@@]12O)O[C@@H]3[C@@H](C[C@@H](N)[C@H](O[C@H]4O[C@H](CN)CC[C@H]4N)[C@H]3O)N[S](=O)(=O)c5cccnc5
HKO SMILES CACTVS 3.385 CN[CH]1[CH](O)[CH](O[CH]2C[C]12O)O[CH]3[CH](C[CH](N)[CH](O[CH]4O[CH](CN)CC[CH]4N)[CH]3O)N[S](=O)(=O)c5cccnc5
HKO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CN[C@H]1[C@@H]([C@H](OC2[C@]1(C2)O)O[C@@H]3[C@@H](C[C@H]([C@@H]([C@H]3O)O[C@@H]4[C@@H](CC[C@H](O4)CN)N)N)NS(=O)(=O)c5cccnc5)O
HKO SMILES "OpenEye OEToolkits" 2.0.7 CNC1C(C(OC2C1(C2)O)OC3C(CC(C(C3O)OC4C(CCC(O4)CN)N)N)NS(=O)(=O)c5cccnc5)O
#
_pdbx_chem_comp_identifier.comp_id HKO
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{R})-4-[(2~{R},3~{R},6~{S})-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[[(3~{S},4~{S},5~{S},6~{R})-5-(methylamino)-4,6-bis(oxidanyl)-2-oxabicyclo[4.1.0]heptan-3-yl]oxy]-3-oxidanyl-cyclohexyl]pyridine-3-sulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HKO 'Create component' 2021-01-15 PDBJ
HKO 'Modify atom id' 2021-03-10 PDBJ
HKO 'Modify formula' 2021-03-10 PDBJ
HKO 'Modify name' 2021-03-10 PDBJ
HKO 'Initial release' 2022-01-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HKO C2 C 14.745 3.840 1
HKO C3 C 16.044 4.590 2
HKO C4 C 16.044 6.090 3
HKO C5 C 13.446 6.090 4
HKO C1 C 13.446 4.590 5
HKO O1 O 12.897 2.541 6
HKO C11 C 9.549 -3.660 7
HKO C12 C 10.848 1.590 8
HKO C13 C 7.500 2.889 9
HKO C21 C 9.549 -5.160 10
HKO C22 C 12.147 0.840 11
HKO C23 C 6.000 2.889 12
HKO C31 C 8.250 -5.910 13
HKO C32 C 12.147 -0.660 14
HKO C33 C 5.250 4.188 15
HKO C41 C 6.951 -5.160 16
HKO C42 C 10.848 -1.410 17
HKO C43 C 6.000 5.487 18
HKO C51 C 6.951 -3.660 19
HKO C52 C 9.549 -0.660 20
HKO C53 C 7.500 5.487 21
HKO C61 C 5.652 -2.910 22
HKO C62 C 9.549 0.840 23
HKO C83 C 6.750 6.787 24
HKO C93 C 3.000 5.487 25
HKO N1 N 14.745 6.840 26
HKO N12 N 10.848 3.090 27
HKO N21 N 10.848 -5.910 28
HKO N32 N 13.446 -1.410 29
HKO N33 N 3.750 4.188 30
HKO N61 N 4.353 -3.660 31
HKO O11 O 10.848 -2.910 32
HKO O2 O 11.397 5.139 33
HKO O23 O 5.250 1.590 34
HKO O43 O 4.500 5.487 35
HKO O51 O 8.250 -2.910 36
HKO O52 O 8.250 -1.410 37
HKO O53 O 8.250 4.188 38
HKO O62 O 8.250 1.590 39
HKO S1 S 12.147 3.840 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HKO C43 O43 SINGLE BEGINWEDGE 1
HKO C23 O23 SINGLE BEGINWEDGE 2
HKO C33 C43 SINGLE NONE 3
HKO C33 N33 SINGLE BEGINDASH 4
HKO C33 C23 SINGLE NONE 5
HKO C93 N33 SINGLE NONE 6
HKO C43 C83 SINGLE NONE 7
HKO C43 C53 SINGLE NONE 8
HKO C23 C13 SINGLE NONE 9
HKO C53 O53 SINGLE NONE 10
HKO N1 C5 DOUBLE NONE 11
HKO N1 C4 SINGLE NONE 12
HKO O53 C13 SINGLE NONE 13
HKO C13 O62 SINGLE BEGINDASH 14
HKO C5 C1 SINGLE NONE 15
HKO C4 C3 DOUBLE NONE 16
HKO C62 O62 SINGLE BEGINDASH 17
HKO O1 S1 DOUBLE NONE 18
HKO C1 S1 SINGLE NONE 19
HKO C1 C2 DOUBLE NONE 20
HKO N12 S1 SINGLE NONE 21
HKO C12 N12 SINGLE BEGINDASH 22
HKO S1 O2 DOUBLE NONE 23
HKO C3 C2 SINGLE NONE 24
HKO C62 C12 SINGLE NONE 25
HKO C62 C52 SINGLE NONE 26
HKO C52 O52 SINGLE BEGINWEDGE 27
HKO C12 C22 SINGLE NONE 28
HKO C52 C42 SINGLE NONE 29
HKO C22 C32 SINGLE NONE 30
HKO C42 C32 SINGLE NONE 31
HKO C42 O11 SINGLE BEGINDASH 32
HKO C32 N32 SINGLE BEGINWEDGE 33
HKO C11 O11 SINGLE BEGINDASH 34
HKO C11 O51 SINGLE NONE 35
HKO C11 C21 SINGLE NONE 36
HKO C21 N21 SINGLE BEGINDASH 37
HKO O51 C51 SINGLE NONE 38
HKO C21 C31 SINGLE NONE 39
HKO C51 C61 SINGLE BEGINWEDGE 40
HKO C51 C41 SINGLE NONE 41
HKO C31 C41 SINGLE NONE 42
HKO C61 N61 SINGLE NONE 43
HKO C53 C83 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HKO MurckoScaffold S1 scaffold 'O=S(=O)(N[C@@H]1CC[C@H](O[C@@H]2CCCCO2)C[C@@H]1O[C@@H]1CCC2C[C@@H]2O1)c1cccnc1' InChI=1S/C22H32N2O6S/c25-31(26,17-4-3-10-23-14-17)24-18-8-7-16(28-21-5-1-2-11-27-21)13-20(18)30-22-9-6-15-12-19(15)29-22/h3-4,10,14-16,18-22,24H,1-2,5-9,11-13H2/t15?,16-,18+,19-,20-,21+,22+/m0/s1 FDKFMUUHYAWZIJ-RTYOIMOZSA-N
HKO cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
HKO cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
HKO pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
HKO pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HKO C2 S1 1
HKO C3 S1 1
HKO C4 S1 1
HKO C5 S1 1
HKO C1 S1 1
HKO O1 S1 1
HKO C11 S1 1
HKO C12 S1 1
HKO C13 S1 1
HKO C21 S1 1
HKO C22 S1 1
HKO C23 S1 1
HKO C31 S1 1
HKO C32 S1 1
HKO C33 S1 1
HKO C41 S1 1
HKO C42 S1 1
HKO C43 S1 1
HKO C51 S1 1
HKO C52 S1 1
HKO C53 S1 1
HKO C62 S1 1
HKO C83 S1 1
HKO N1 S1 1
HKO N12 S1 1
HKO O11 S1 1
HKO O2 S1 1
HKO O51 S1 1
HKO O53 S1 1
HKO O62 S1 1
HKO S1 S1 1
HKO C12 F1 1
HKO C62 F1 1
HKO C52 F1 1
HKO C42 F1 1
HKO C32 F1 1
HKO C22 F1 1
HKO C43 F2 1
HKO C83 F2 1
HKO C53 F2 1
HKO C41 F3 1
HKO C51 F3 1
HKO O51 F3 1
HKO C11 F3 1
HKO C21 F3 1
HKO C31 F3 1
HKO O11 F3 1
HKO C43 F3 2
HKO C53 F3 2
HKO O53 F3 2
HKO C13 F3 2
HKO C23 F3 2
HKO C33 F3 2
HKO O62 F3 2
HKO C4 F4 1
HKO C3 F4 1
HKO C2 F4 1
HKO C1 F4 1
HKO C5 F4 1
HKO N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HKO
_pdbe_chem_comp_rdkit_properties.exactmw 588.258
_pdbe_chem_comp_rdkit_properties.amw 588.684
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 11
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.792
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 13
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 289.202
_pdbe_chem_comp_rdkit_properties.tpsa 246.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.918
_pdbe_chem_comp_rdkit_properties.CrippenMR 139.269
_pdbe_chem_comp_rdkit_properties.chi0v 19.582
_pdbe_chem_comp_rdkit_properties.chi1v 11.444
_pdbe_chem_comp_rdkit_properties.chi2v 5.887
_pdbe_chem_comp_rdkit_properties.chi3v 5.887
_pdbe_chem_comp_rdkit_properties.chi4v 3.730
_pdbe_chem_comp_rdkit_properties.chi0n 58.766
_pdbe_chem_comp_rdkit_properties.chi1n 29.307
_pdbe_chem_comp_rdkit_properties.chi2n 4.755
_pdbe_chem_comp_rdkit_properties.chi3n 4.755
_pdbe_chem_comp_rdkit_properties.chi4n 2.929
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.380
_pdbe_chem_comp_rdkit_properties.kappa1 8.007
_pdbe_chem_comp_rdkit_properties.kappa2 11.716
_pdbe_chem_comp_rdkit_properties.kappa3 5.785
_pdbe_chem_comp_rdkit_properties.Phi 2.345
#
_pdbe_chem_comp_external_mappings.comp_id HKO
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id HKO
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HKO C2 -2.213 4.773 -0.618 ETKDGv3 1
HKO C3 -2.987 5.014 0.615 ETKDGv3 2
HKO C4 -4.158 4.390 0.787 ETKDGv3 3
HKO C5 -3.991 3.273 -1.322 ETKDGv3 4
HKO C1 -2.689 3.937 -1.552 ETKDGv3 5
HKO O1 -0.833 4.716 -3.318 ETKDGv3 6
HKO C11 2.913 -1.090 0.728 ETKDGv3 7
HKO C12 0.099 2.193 -1.681 ETKDGv3 8
HKO C13 -1.917 -0.254 0.094 ETKDGv3 9
HKO C21 3.004 -2.510 0.106 ETKDGv3 10
HKO C22 1.427 1.540 -2.097 ETKDGv3 11
HKO C23 -1.885 -1.796 0.311 ETKDGv3 12
HKO C31 3.816 -3.464 1.014 ETKDGv3 13
HKO C32 2.486 1.639 -0.980 ETKDGv3 14
HKO C33 -3.164 -2.501 -0.183 ETKDGv3 15
HKO C41 4.733 -2.684 1.954 ETKDGv3 16
HKO C42 1.959 1.020 0.338 ETKDGv3 17
HKO C43 -3.606 -1.972 -1.566 ETKDGv3 18
HKO C51 3.879 -1.708 2.804 ETKDGv3 19
HKO C52 0.589 1.617 0.750 ETKDGv3 20
HKO C53 -3.555 -0.457 -1.697 ETKDGv3 21
HKO C61 4.709 -0.592 3.463 ETKDGv3 22
HKO C62 -0.455 1.528 -0.390 ETKDGv3 23
HKO C83 -2.624 -1.331 -2.551 ETKDGv3 24
HKO C93 -4.100 -4.728 0.175 ETKDGv3 25
HKO N1 -4.655 3.498 -0.225 ETKDGv3 26
HKO N12 -0.846 2.110 -2.811 ETKDGv3 27
HKO N21 1.670 -3.068 -0.140 ETKDGv3 28
HKO N32 2.890 3.033 -0.774 ETKDGv3 29
HKO N33 -2.917 -3.957 -0.213 ETKDGv3 30
HKO N61 5.156 0.401 2.489 ETKDGv3 31
HKO O11 1.819 -0.384 0.169 ETKDGv3 32
HKO O2 -2.712 3.412 -4.159 ETKDGv3 33
HKO O23 -1.636 -2.112 1.660 ETKDGv3 34
HKO O43 -4.772 -2.507 -2.127 ETKDGv3 35
HKO O51 2.739 -1.170 2.134 ETKDGv3 36
HKO O52 0.735 2.960 1.141 ETKDGv3 37
HKO O53 -3.107 0.219 -0.522 ETKDGv3 38
HKO O62 -0.777 0.166 -0.642 ETKDGv3 39
HKO S1 -1.763 3.576 -3.006 ETKDGv3 40
HKO H1 -1.255 5.261 -0.745 ETKDGv3 41
HKO H2 -2.605 5.685 1.374 ETKDGv3 42
HKO H3 -4.734 4.555 1.688 ETKDGv3 43
HKO H4 -4.394 2.593 -2.060 ETKDGv3 44
HKO H5 3.868 -0.568 0.477 ETKDGv3 45
HKO H6 0.324 3.259 -1.453 ETKDGv3 46
HKO H7 -1.902 0.202 1.111 ETKDGv3 47
HKO H8 3.538 -2.419 -0.869 ETKDGv3 48
HKO H9 1.811 2.037 -3.015 ETKDGv3 49
HKO H10 1.257 0.471 -2.352 ETKDGv3 50
HKO H11 -1.032 -2.212 -0.265 ETKDGv3 51
HKO H12 4.422 -4.155 0.389 ETKDGv3 52
HKO H13 3.131 -4.085 1.633 ETKDGv3 53
HKO H14 3.380 1.061 -1.308 ETKDGv3 54
HKO H15 -3.981 -2.254 0.534 ETKDGv3 55
HKO H16 5.277 -3.390 2.619 ETKDGv3 56
HKO H17 5.489 -2.141 1.349 ETKDGv3 57
HKO H18 2.671 1.274 1.162 ETKDGv3 58
HKO H19 3.476 -2.319 3.642 ETKDGv3 59
HKO H20 0.208 1.034 1.620 ETKDGv3 60
HKO H21 -4.427 -0.006 -2.216 ETKDGv3 61
HKO H23 5.585 -1.030 3.993 ETKDGv3 62
HKO H24 4.073 -0.089 4.225 ETKDGv3 63
HKO H25 -1.350 2.114 -0.080 ETKDGv3 64
HKO H26 -1.554 -1.410 -2.294 ETKDGv3 65
HKO H27 -2.941 -1.412 -3.612 ETKDGv3 66
HKO H29 -3.872 -5.813 0.105 ETKDGv3 67
HKO H30 -4.374 -4.504 1.229 ETKDGv3 68
HKO H31 -4.962 -4.506 -0.489 ETKDGv3 69
HKO H32 -1.524 1.325 -2.690 ETKDGv3 70
HKO H33 1.245 -2.552 -0.944 ETKDGv3 71
HKO H34 1.779 -4.052 -0.477 ETKDGv3 72
HKO H36 3.296 3.396 -1.667 ETKDGv3 73
HKO H37 3.671 3.051 -0.078 ETKDGv3 74
HKO H39 -2.613 -4.259 -1.168 ETKDGv3 75
HKO H41 5.997 0.026 1.994 ETKDGv3 76
HKO H42 5.484 1.242 3.017 ETKDGv3 77
HKO H44 -2.407 -1.788 2.194 ETKDGv3 78
HKO H45 -4.479 -3.306 -2.637 ETKDGv3 79
HKO H46 1.157 2.956 2.039 ETKDGv3 80
#