data_HKU
#
_chem_comp.id HKU
_chem_comp.name "1-propan-2-ylimidazole-2-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H10 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-01-19
_chem_comp.pdbx_modified_date 2022-01-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 154.166
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HKU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7DUB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HKU C10 C1 C 0 1 N N N N N N 14.739 -19.470 16.676 2.332 0.899 1.249 C10 HKU 1
HKU C11 C2 C 0 1 N N N N N N 13.103 -20.954 17.909 2.332 0.899 -1.250 C11 HKU 2
HKU C01 C3 C 0 1 Y N N N N N 11.717 -16.775 17.422 0.020 -2.439 0.000 C01 HKU 3
HKU C02 C4 C 0 1 Y N N N N N 12.605 -17.743 16.968 1.101 -1.620 0.000 C02 HKU 4
HKU N03 N1 N 0 1 Y N N N N N 12.940 -18.502 18.000 0.638 -0.348 0.000 N03 HKU 5
HKU C04 C5 C 0 1 Y N N N N N 12.299 -18.040 19.064 -0.727 -0.416 -0.000 C04 HKU 6
HKU N05 N2 N 0 1 Y N N N N N 11.557 -17.008 18.709 -1.077 -1.685 -0.000 N05 HKU 7
HKU C06 C6 C 0 1 N N N N N N 12.339 -18.561 20.489 -1.648 0.733 0.000 C06 HKU 8
HKU O07 O1 O 0 1 N N N N N N 11.619 -17.979 21.340 -2.981 0.528 -0.000 O07 HKU 9
HKU O08 O2 O 0 1 N N N N N N 13.066 -19.539 20.822 -1.207 1.865 0.001 O08 HKU 10
HKU C09 C7 C 0 1 N N N N N N 13.868 -19.631 17.924 1.449 0.873 -0.000 C09 HKU 11
HKU H1 H1 H 0 1 N N N N N N 15.273 -18.509 16.722 2.935 1.807 1.249 H1 HKU 12
HKU H2 H2 H 0 1 N N N N N N 15.468 -20.292 16.629 1.703 0.880 2.139 H2 HKU 13
HKU H3 H3 H 0 1 N N N N N N 14.102 -19.493 15.779 2.987 0.027 1.249 H3 HKU 14
HKU H4 H4 H 0 1 N N N N N N 12.490 -21.034 18.819 2.987 0.027 -1.250 H4 HKU 15
HKU H5 H5 H 0 1 N N N N N N 12.451 -20.991 17.024 1.702 0.880 -2.139 H5 HKU 16
HKU H6 H6 H 0 1 N N N N N N 13.817 -21.790 17.874 2.934 1.807 -1.250 H6 HKU 17
HKU H7 H7 H 0 1 N N N N N N 11.253 -15.993 16.840 0.045 -3.519 -0.003 H7 HKU 18
HKU H8 H8 H 0 1 N N N N N N 12.959 -17.856 15.954 2.137 -1.926 0.001 H8 HKU 19
HKU H9 H9 H 0 1 N N N N N N 11.733 -18.393 22.188 -3.545 1.313 -0.000 H9 HKU 20
HKU H10 H10 H 0 1 N N N N N N 14.524 -19.620 18.807 0.794 1.744 0.000 H10 HKU 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HKU C10 C09 SING N N 1
HKU C02 C01 DOUB Y N 2
HKU C02 N03 SING Y N 3
HKU C01 N05 SING Y N 4
HKU C11 C09 SING N N 5
HKU C09 N03 SING N N 6
HKU N03 C04 SING Y N 7
HKU N05 C04 DOUB Y N 8
HKU C04 C06 SING N N 9
HKU C06 O08 DOUB N N 10
HKU C06 O07 SING N N 11
HKU C10 H1 SING N N 12
HKU C10 H2 SING N N 13
HKU C10 H3 SING N N 14
HKU C11 H4 SING N N 15
HKU C11 H5 SING N N 16
HKU C11 H6 SING N N 17
HKU C01 H7 SING N N 18
HKU C02 H8 SING N N 19
HKU O07 H9 SING N N 20
HKU C09 H10 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HKU InChI InChI 1.03 InChI=1S/C7H10N2O2/c1-5(2)9-4-3-8-6(9)7(10)11/h3-5H,1-2H3,(H,10,11)
HKU InChIKey InChI 1.03 RZFBZKBGPJXOTM-UHFFFAOYSA-N
HKU SMILES_CANONICAL CACTVS 3.385 CC(C)n1ccnc1C(O)=O
HKU SMILES CACTVS 3.385 CC(C)n1ccnc1C(O)=O
HKU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)n1ccnc1C(=O)O
HKU SMILES "OpenEye OEToolkits" 2.0.7 CC(C)n1ccnc1C(=O)O
#
_pdbx_chem_comp_identifier.comp_id HKU
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "1-propan-2-ylimidazole-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HKU 'Create component' 2021-01-19 PDBJ
HKU 'Initial release' 2022-01-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HKU C10 C 8.054 1.393 1
HKU C11 C 7.251 -1.078 2
HKU C01 C 3.549 2.279 3
HKU C02 C 5.049 2.279 4
HKU N03 N 5.513 0.853 5
HKU C04 C 4.299 -0.029 6
HKU N05 N 3.086 0.853 7
HKU C06 C 4.299 -1.529 8
HKU O07 O 5.598 -2.279 9
HKU O08 O 3.000 -2.279 10
HKU C09 C 6.939 0.389 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HKU C10 C09 SINGLE NONE 1
HKU C02 C01 DOUBLE NONE 2
HKU C02 N03 SINGLE NONE 3
HKU C01 N05 SINGLE NONE 4
HKU C11 C09 SINGLE NONE 5
HKU C09 N03 SINGLE NONE 6
HKU N03 C04 SINGLE NONE 7
HKU N05 C04 DOUBLE NONE 8
HKU C04 C06 SINGLE NONE 9
HKU C06 O08 DOUBLE NONE 10
HKU C06 O07 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HKU MurckoScaffold S1 scaffold 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
HKU imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HKU C01 S1 1
HKU C02 S1 1
HKU N03 S1 1
HKU C04 S1 1
HKU N05 S1 1
HKU C01 F1 1
HKU C02 F1 1
HKU N03 F1 1
HKU C04 F1 1
HKU N05 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HKU
_pdbe_chem_comp_rdkit_properties.exactmw 154.074
_pdbe_chem_comp_rdkit_properties.amw 154.169
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 78.622
_pdbe_chem_comp_rdkit_properties.tpsa 55.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.107
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.305
_pdbe_chem_comp_rdkit_properties.chi0v 5.211
_pdbe_chem_comp_rdkit_properties.chi1v 2.526
_pdbe_chem_comp_rdkit_properties.chi2v 0.942
_pdbe_chem_comp_rdkit_properties.chi3v 0.942
_pdbe_chem_comp_rdkit_properties.chi4v 0.530
_pdbe_chem_comp_rdkit_properties.chi0n 15.211
_pdbe_chem_comp_rdkit_properties.chi1n 7.435
_pdbe_chem_comp_rdkit_properties.chi2n 0.942
_pdbe_chem_comp_rdkit_properties.chi3n 0.942
_pdbe_chem_comp_rdkit_properties.chi4n 0.530
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.320
_pdbe_chem_comp_rdkit_properties.kappa1 1.883
_pdbe_chem_comp_rdkit_properties.kappa2 2.736
_pdbe_chem_comp_rdkit_properties.kappa3 1.392
_pdbe_chem_comp_rdkit_properties.Phi 0.468
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HKU UniChem ChEMBL CHEMBL5188886
HKU UniChem PDBe HKU
HKU UniChem ZINC ZINC000075852101
HKU UniChem SureChEMBL SCHEMBL1431164
HKU UniChem PubChem 55252644
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HKU C10 -0.754 -0.488 1.651 ETKDGv3 1
HKU C11 -2.244 -0.491 -0.385 ETKDGv3 2
HKU C01 0.868 2.442 -0.861 ETKDGv3 3
HKU C02 -0.246 1.752 -0.708 ETKDGv3 4
HKU N03 0.076 0.379 -0.499 ETKDGv3 5
HKU C04 1.513 0.403 -0.512 ETKDGv3 6
HKU N05 1.995 1.585 -0.733 ETKDGv3 7
HKU C06 2.397 -0.760 -0.305 ETKDGv3 8
HKU O07 1.879 -2.041 -0.150 ETKDGv3 9
HKU O08 3.646 -0.593 -0.276 ETKDGv3 10
HKU C09 -0.803 -0.620 0.126 ETKDGv3 11
HKU H1 -1.401 -1.257 2.124 ETKDGv3 12
HKU H2 0.286 -0.638 2.011 ETKDGv3 13
HKU H3 -1.098 0.520 1.965 ETKDGv3 14
HKU H4 -2.254 -0.503 -1.496 ETKDGv3 15
HKU H5 -2.853 -1.346 -0.021 ETKDGv3 16
HKU H6 -2.715 0.449 -0.027 ETKDGv3 17
HKU H7 0.925 3.510 -1.025 ETKDGv3 18
HKU H8 -1.243 2.170 -0.715 ETKDGv3 19
HKU H9 2.491 -2.836 -0.010 ETKDGv3 20
HKU H10 -0.466 -1.637 -0.155 ETKDGv3 21
#