data_HLK
#
_chem_comp.id HLK
_chem_comp.name ~{N}4-[(4-fluorophenyl)methyl]-6-(trifluoromethyl)pyridine-2,4-diamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H11 F4 N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-12-13
_chem_comp.pdbx_modified_date 2019-11-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 285.240
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HLK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Q7V
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HLK C10 C1 C 0 1 Y N N N N N -33.970 -27.059 5.251 -3.717 -0.264 -1.195 C10 HLK 1
HLK C15 C2 C 0 1 Y N N N N N -35.252 -25.033 5.232 -3.717 -0.250 1.200 C15 HLK 2
HLK C17 C3 C 0 1 N N N N N N -31.591 -21.446 0.871 4.023 1.268 -0.002 C17 HLK 3
HLK C02 C4 C 0 1 Y N N N N N -31.193 -24.920 2.082 2.418 -2.048 0.002 C02 HLK 4
HLK C04 C5 C 0 1 Y N N N N N -31.641 -22.685 1.754 2.960 0.199 -0.001 C04 HLK 5
HLK C05 C6 C 0 1 Y N N N N N -32.204 -22.593 3.015 1.631 0.563 -0.003 C05 HLK 6
HLK C06 C7 C 0 1 Y N N N N N -32.258 -23.715 3.828 0.651 -0.432 0.003 C06 HLK 7
HLK C08 C8 C 0 1 N N N N N N -32.911 -24.843 5.988 -1.714 -1.160 0.008 C08 HLK 8
HLK C09 C9 C 0 1 Y N N N N N -34.070 -25.690 5.479 -3.088 -0.541 0.004 C09 HLK 9
HLK C11 C10 C 0 1 Y N N N N N -35.074 -27.765 4.781 -4.975 0.308 -1.199 C11 HLK 10
HLK C12 C11 C 0 1 Y N N N N N -36.264 -27.093 4.538 -5.605 0.604 -0.002 C12 HLK 11
HLK C14 C12 C 0 1 Y N N N N N -36.337 -25.736 4.766 -4.973 0.327 1.198 C14 HLK 12
HLK C16 C13 C 0 1 Y N N N N N -31.739 -24.906 3.349 1.060 -1.762 0.001 C16 HLK 13
HLK F13 F1 F 0 1 N N N N N N -37.379 -27.730 4.076 -6.832 1.168 -0.006 F13 HLK 14
HLK F18 F2 F 0 1 N N N N N N -32.626 -20.619 1.194 5.162 0.792 -0.659 F18 HLK 15
HLK F19 F3 F 0 1 N N N N N N -31.695 -21.811 -0.439 3.543 2.403 -0.664 F19 HLK 16
HLK F20 F4 F 0 1 N N N N N N -30.413 -20.795 1.087 4.350 1.601 1.317 F20 HLK 17
HLK N01 N1 N 0 1 N N N N N N -30.656 -26.176 1.597 2.842 -3.372 -0.001 N01 HLK 18
HLK N03 N2 N 0 1 Y N N N N N -31.157 -23.837 1.328 3.315 -1.072 0.002 N03 HLK 19
HLK N07 N3 N 0 1 N N N N N N -32.837 -23.649 5.159 -0.701 -0.101 0.001 N07 HLK 20
HLK H101 H1 H 0 0 N N N N N N -33.038 -27.572 5.438 -3.224 -0.491 -2.129 H101 HLK 21
HLK H151 H2 H 0 0 N N N N N N -35.328 -23.969 5.403 -3.224 -0.467 2.136 H151 HLK 22
HLK H051 H3 H 0 0 N N N N N N -32.600 -21.651 3.364 1.350 1.606 -0.005 H051 HLK 23
HLK H081 H4 H 0 0 N N N N N N -31.971 -25.410 5.913 -1.593 -1.772 0.901 H081 HLK 24
HLK H082 H5 H 0 0 N N N N N N -33.086 -24.561 7.037 -1.594 -1.783 -0.878 H082 HLK 25
HLK H111 H6 H 0 0 N N N N N N -35.005 -28.829 4.607 -5.467 0.524 -2.136 H111 HLK 26
HLK H141 H7 H 0 0 N N N N N N -37.264 -25.215 4.575 -5.463 0.557 2.132 H141 HLK 27
HLK H161 H8 H 0 0 N N N N N N -31.761 -25.802 3.952 0.332 -2.559 -0.003 H161 HLK 28
HLK H011 H9 H 0 0 N N N N N N -30.296 -26.050 0.673 2.190 -4.091 -0.004 H011 HLK 29
HLK H012 H10 H 0 0 N N N N N N -29.921 -26.480 2.203 3.790 -3.578 0.001 H012 HLK 30
HLK H071 H11 H 0 0 N N N N N N -32.303 -22.976 5.671 -0.973 0.830 -0.004 H071 HLK 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HLK F19 C17 SING N N 1
HLK C17 F20 SING N N 2
HLK C17 F18 SING N N 3
HLK C17 C04 SING N N 4
HLK N03 C04 DOUB Y N 5
HLK N03 C02 SING Y N 6
HLK N01 C02 SING N N 7
HLK C04 C05 SING Y N 8
HLK C02 C16 DOUB Y N 9
HLK C05 C06 DOUB Y N 10
HLK C16 C06 SING Y N 11
HLK C06 N07 SING N N 12
HLK F13 C12 SING N N 13
HLK C12 C14 DOUB Y N 14
HLK C12 C11 SING Y N 15
HLK C14 C15 SING Y N 16
HLK C11 C10 DOUB Y N 17
HLK N07 C08 SING N N 18
HLK C15 C09 DOUB Y N 19
HLK C10 C09 SING Y N 20
HLK C09 C08 SING N N 21
HLK C10 H101 SING N N 22
HLK C15 H151 SING N N 23
HLK C05 H051 SING N N 24
HLK C08 H081 SING N N 25
HLK C08 H082 SING N N 26
HLK C11 H111 SING N N 27
HLK C14 H141 SING N N 28
HLK C16 H161 SING N N 29
HLK N01 H011 SING N N 30
HLK N01 H012 SING N N 31
HLK N07 H071 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HLK InChI InChI 1.03 InChI=1S/C13H11F4N3/c14-9-3-1-8(2-4-9)7-19-10-5-11(13(15,16)17)20-12(18)6-10/h1-6H,7H2,(H3,18,19,20)
HLK InChIKey InChI 1.03 NVURBNAAKDVJHE-UHFFFAOYSA-N
HLK SMILES_CANONICAL CACTVS 3.385 Nc1cc(NCc2ccc(F)cc2)cc(n1)C(F)(F)F
HLK SMILES CACTVS 3.385 Nc1cc(NCc2ccc(F)cc2)cc(n1)C(F)(F)F
HLK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(ccc1CNc2cc(nc(c2)N)C(F)(F)F)F
HLK SMILES "OpenEye OEToolkits" 2.0.6 c1cc(ccc1CNc2cc(nc(c2)N)C(F)(F)F)F
#
_pdbx_chem_comp_identifier.comp_id HLK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier ~{N}4-[(4-fluorophenyl)methyl]-6-(trifluoromethyl)pyridine-2,4-diamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HLK 'Create component' 2018-12-13 EBI
HLK 'Initial release' 2019-11-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HLK C10 C 6.897 2.525 1
HLK C15 C 9.495 2.525 2
HLK C17 C 4.299 -4.976 3
HLK C02 C 8.196 -4.226 4
HLK C04 C 5.598 -4.226 5
HLK C05 C 5.598 -2.725 6
HLK C06 C 6.897 -1.976 7
HLK C08 C 8.196 0.275 8
HLK C09 C 8.196 1.774 9
HLK C11 C 6.897 4.024 10
HLK C12 C 8.196 4.774 11
HLK C14 C 9.495 4.024 12
HLK C16 C 8.196 -2.725 13
HLK F13 F 8.196 6.274 14
HLK F18 F 3.000 -5.726 15
HLK F19 F 3.549 -3.676 16
HLK F20 F 5.049 -6.274 17
HLK N01 N 9.495 -4.976 18
HLK N03 N 6.897 -4.976 19
HLK N07 N 6.897 -0.475 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HLK F19 C17 SINGLE NONE 1
HLK C17 F20 SINGLE NONE 2
HLK C17 F18 SINGLE NONE 3
HLK C17 C04 SINGLE NONE 4
HLK N03 C04 SINGLE NONE 5
HLK N03 C02 DOUBLE NONE 6
HLK N01 C02 SINGLE NONE 7
HLK C04 C05 DOUBLE NONE 8
HLK C02 C16 SINGLE NONE 9
HLK C05 C06 SINGLE NONE 10
HLK C16 C06 DOUBLE NONE 11
HLK C06 N07 SINGLE NONE 12
HLK F13 C12 SINGLE NONE 13
HLK C12 C14 DOUBLE NONE 14
HLK C12 C11 SINGLE NONE 15
HLK C14 C15 SINGLE NONE 16
HLK C11 C10 DOUBLE NONE 17
HLK N07 C08 SINGLE NONE 18
HLK C15 C09 DOUBLE NONE 19
HLK C10 C09 SINGLE NONE 20
HLK C09 C08 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HLK MurckoScaffold S1 scaffold c1ccc(CNc2ccncc2)cc1 InChI=1S/C12H12N2/c1-2-4-11(5-3-1)10-14-12-6-8-13-9-7-12/h1-9H,10H2,(H,13,14) LCUREJHJUJCKQS-UHFFFAOYSA-N
HLK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
HLK pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HLK C10 S1 1
HLK C15 S1 1
HLK C02 S1 1
HLK C04 S1 1
HLK C05 S1 1
HLK C06 S1 1
HLK C08 S1 1
HLK C09 S1 1
HLK C11 S1 1
HLK C12 S1 1
HLK C14 S1 1
HLK C16 S1 1
HLK N03 S1 1
HLK N07 S1 1
HLK C10 F1 1
HLK C11 F1 1
HLK C12 F1 1
HLK C14 F1 1
HLK C15 F1 1
HLK C09 F1 1
HLK C02 F2 1
HLK C16 F2 1
HLK C06 F2 1
HLK C05 F2 1
HLK C04 F2 1
HLK N03 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HLK
_pdbe_chem_comp_rdkit_properties.exactmw 285.089
_pdbe_chem_comp_rdkit_properties.amw 285.244
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.154
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 127.619
_pdbe_chem_comp_rdkit_properties.tpsa 50.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.563
_pdbe_chem_comp_rdkit_properties.CrippenMR 65.198
_pdbe_chem_comp_rdkit_properties.chi0v 9.353
_pdbe_chem_comp_rdkit_properties.chi1v 4.874
_pdbe_chem_comp_rdkit_properties.chi2v 1.827
_pdbe_chem_comp_rdkit_properties.chi3v 1.827
_pdbe_chem_comp_rdkit_properties.chi4v 1.066
_pdbe_chem_comp_rdkit_properties.chi0n 20.353
_pdbe_chem_comp_rdkit_properties.chi1n 10.216
_pdbe_chem_comp_rdkit_properties.chi2n 1.827
_pdbe_chem_comp_rdkit_properties.chi3n 1.827
_pdbe_chem_comp_rdkit_properties.chi4n 1.066
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.310
_pdbe_chem_comp_rdkit_properties.kappa1 5.590
_pdbe_chem_comp_rdkit_properties.kappa2 5.359
_pdbe_chem_comp_rdkit_properties.kappa3 3.595
_pdbe_chem_comp_rdkit_properties.Phi 1.498
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HLK UniChem PDBe HLK
HLK UniChem PubChem 139593665
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HLK C10 2.824 -1.077 -1.689 ETKDGv3 1
HLK C15 3.357 0.192 0.331 ETKDGv3 2
HLK C17 -3.787 2.613 -0.549 ETKDGv3 3
HLK C02 -3.394 -0.573 1.387 ETKDGv3 4
HLK C04 -3.136 1.397 0.044 ETKDGv3 5
HLK C05 -1.834 1.144 -0.172 ETKDGv3 6
HLK C06 -1.208 -0.066 0.424 ETKDGv3 7
HLK C08 1.071 0.471 -0.584 ETKDGv3 8
HLK C09 2.459 -0.107 -0.626 ETKDGv3 9
HLK C11 4.044 -1.628 -1.708 ETKDGv3 10
HLK C12 5.032 -1.278 -0.667 ETKDGv3 11
HLK C14 4.705 -0.415 0.302 ETKDGv3 12
HLK C16 -1.965 -0.885 1.172 ETKDGv3 13
HLK F13 6.267 -1.837 -0.692 ETKDGv3 14
HLK F18 -5.123 2.666 -0.194 ETKDGv3 15
HLK F19 -3.156 3.754 -0.086 ETKDGv3 16
HLK F20 -3.693 2.568 -1.928 ETKDGv3 17
HLK N01 -4.207 -1.438 2.180 ETKDGv3 18
HLK N03 -3.913 0.494 0.852 ETKDGv3 19
HLK N07 0.183 -0.373 0.217 ETKDGv3 20
HLK H101 2.103 -1.342 -2.452 ETKDGv3 21
HLK H151 3.104 0.875 1.132 ETKDGv3 22
HLK H051 -1.250 1.823 -0.779 ETKDGv3 23
HLK H081 0.673 0.548 -1.619 ETKDGv3 24
HLK H082 1.100 1.495 -0.151 ETKDGv3 25
HLK H111 4.308 -2.334 -2.486 ETKDGv3 26
HLK H141 5.424 -0.160 1.070 ETKDGv3 27
HLK H161 -1.539 -1.774 1.620 ETKDGv3 28
HLK H011 -5.217 -1.220 2.334 ETKDGv3 29
HLK H012 -3.804 -2.297 2.616 ETKDGv3 30
HLK H071 0.574 -1.238 0.659 ETKDGv3 31
#