data_HMY
#
_chem_comp.id HMY
_chem_comp.name
'(1aR,8S,13S,14S,15aR)-5,13,14-trihydroxy-3-methoxy-8-methyl-8,9,13,14,15,15a-hexahydro-6H-oxireno[k][2]benzoxacyclotetradecine-6,12(1aH)-dione'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C19 H22 O8'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Hypothemycin
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-02-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 378.373
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HMY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3C9W
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HMY O23 O23 O 0 1 N N N N N N 29.497 8.192 8.734 0.551 0.446 0.962 O23 HMY 1
HMY C7 C7 C 0 1 N N N N N N 29.372 7.234 7.978 -0.294 1.147 0.450 C7 HMY 2
HMY O8 O8 O 0 1 N N N N N N 28.066 6.858 7.434 -0.031 2.397 0.048 O8 HMY 3
HMY C9 C9 C 0 1 N N S N N N 26.976 7.746 7.661 1.301 2.945 0.065 C9 HMY 4
HMY C25 C25 C 0 1 N N N N N N 27.093 8.895 6.665 1.908 2.892 1.466 C25 HMY 5
HMY C10 C10 C 0 1 N N N N N N 25.662 7.002 7.434 2.194 2.217 -0.941 C10 HMY 6
HMY C11 C11 C 0 1 N N N N N N 25.365 5.886 8.436 3.601 2.143 -0.438 C11 HMY 7
HMY C12 C12 C 0 1 N N N N N N 24.254 4.965 7.932 4.318 1.060 -0.225 C12 HMY 8
HMY C2 C2 C 0 1 Y N N N N N 30.572 6.395 7.617 -1.648 0.593 0.252 C2 HMY 9
HMY C1 C1 C 0 1 Y N N N N N 31.782 6.637 8.269 -2.697 1.456 -0.111 C1 HMY 10
HMY O20 O20 O 0 1 N N N N N N 31.858 7.619 9.200 -2.471 2.781 -0.293 O20 HMY 11
HMY C6 C6 C 0 1 Y N N N N N 32.918 5.886 7.987 -3.977 0.954 -0.282 C6 HMY 12
HMY C5 C5 C 0 1 Y N N N N N 32.838 4.882 7.029 -4.215 -0.400 -0.099 C5 HMY 13
HMY O21 O21 O 0 1 N N N N N N 33.939 4.123 6.735 -5.469 -0.892 -0.257 O21 HMY 14
HMY C22 C22 C 0 1 N N N N N N 33.841 2.694 6.834 -6.493 0.040 -0.612 C22 HMY 15
HMY C4 C4 C 0 1 Y N N N N N 31.631 4.635 6.372 -3.171 -1.251 0.241 C4 HMY 16
HMY C3 C3 C 0 1 Y N N N N N 30.486 5.373 6.665 -1.898 -0.769 0.407 C3 HMY 17
HMY C18 C18 C 0 1 N N R N N N 29.227 5.090 5.923 -0.813 -1.766 0.746 C18 HMY 18
HMY O31 O31 O 0 1 N N N N N N 29.338 4.699 4.551 -1.088 -3.091 0.254 O31 HMY 19
HMY C17 C17 C 0 1 N N R N N N 28.749 3.727 5.411 0.018 -2.397 -0.354 C17 HMY 20
HMY C16 C16 C 0 1 N N N N N N 27.251 3.446 5.251 1.373 -3.045 -0.078 C16 HMY 21
HMY C15 C15 C 0 1 N N S N N N 26.711 2.770 6.508 2.410 -2.056 0.428 C15 HMY 22
HMY O29 O29 O 0 1 N N N N N N 27.134 1.389 6.484 2.026 -1.534 1.700 O29 HMY 23
HMY C14 C14 C 0 1 N N S N N N 25.185 2.842 6.684 2.612 -0.910 -0.567 C14 HMY 24
HMY O28 O28 O 0 1 N N N N N N 24.563 2.010 5.695 2.487 -1.413 -1.900 O28 HMY 25
HMY C13 C13 C 0 1 N N N N N N 24.588 4.232 6.649 3.984 -0.336 -0.386 C13 HMY 26
HMY O24 O24 O 0 1 N N N N N N 24.315 4.761 5.584 4.917 -1.134 -0.374 O24 HMY 27
HMY H9 H9 H 0 1 N N N N N N 26.996 8.129 8.692 1.245 4.004 -0.239 H9 HMY 28
HMY H25 H25 H 0 1 N N N N N N 27.121 9.851 7.209 1.955 1.856 1.803 H25 HMY 29
HMY H25A H25A H 0 0 N N N N N N 28.017 8.779 6.079 2.912 3.313 1.443 H25A HMY 30
HMY H25B H25B H 0 0 N N N N N N 26.225 8.884 5.989 1.287 3.469 2.152 H25B HMY 31
HMY H10 H10 H 0 1 N N N N N N 24.847 7.737 7.503 1.792 1.244 -1.177 H10 HMY 32
HMY H10A H10A H 0 0 N N N N N N 25.747 6.519 6.450 2.194 2.805 -1.875 H10A HMY 33
HMY H11 H11 H 0 1 N N N N N N 25.875 5.764 9.380 4.105 3.104 -0.234 H11 HMY 34
HMY H12 H12 H 0 1 N N N N N N 23.312 4.847 8.446 5.350 1.260 0.138 H12 HMY 35
HMY HO20 HO20 H 0 0 N N N N N N 31.876 7.233 10.068 -2.231 3.018 -1.199 HO20 HMY 36
HMY H6 H6 H 0 1 N N N N N N 33.847 6.080 8.504 -4.785 1.615 -0.556 H6 HMY 37
HMY H22 H22 H 0 1 N N N N N N 33.816 2.257 5.825 -7.444 -0.484 -0.706 H22 HMY 38
HMY H22A H22A H 0 0 N N N N N N 34.712 2.304 7.381 -6.573 0.803 0.163 H22A HMY 39
HMY H22B H22B H 0 0 N N N N N N 32.920 2.426 7.372 -6.242 0.512 -1.561 H22B HMY 40
HMY H4 H4 H 0 1 N N N N N N 31.584 3.858 5.623 -3.361 -2.305 0.382 H4 HMY 41
HMY H18 H18 H 0 1 N N N N N N 28.745 5.856 6.549 -0.405 -1.692 1.752 H18 HMY 42
HMY H17 H17 H 0 1 N N N N N N 28.939 2.681 5.693 -0.133 -2.049 -1.381 H17 HMY 43
HMY H16 H16 H 0 1 N N N N N N 26.718 4.395 5.091 1.237 -3.836 0.670 H16 HMY 44
HMY H16A H16A H 0 0 N N N N N N 27.098 2.781 4.388 1.736 -3.519 -0.996 H16A HMY 45
HMY H15 H15 H 0 1 N N N N N N 27.120 3.322 7.367 3.369 -2.579 0.549 H15 HMY 46
HMY HO29 HO29 H 0 0 N N N N N N 27.227 1.101 5.583 2.653 -0.897 2.070 HO29 HMY 47
HMY H14 H14 H 0 1 N N N N N N 24.983 2.482 7.704 1.854 -0.158 -0.389 H14 HMY 48
HMY HO28 HO28 H 0 0 N N N N N N 24.425 2.511 4.900 2.603 -0.742 -2.587 HO28 HMY 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HMY O23 C7 DOUB N N 1
HMY C7 O8 SING N N 2
HMY C7 C2 SING N N 3
HMY O8 C9 SING N N 4
HMY C9 C25 SING N N 5
HMY C9 C10 SING N N 6
HMY C10 C11 SING N N 7
HMY C11 C12 DOUB N N 8
HMY C12 C13 SING N N 9
HMY C2 C1 DOUB Y N 10
HMY C2 C3 SING Y N 11
HMY C1 O20 SING N N 12
HMY C1 C6 SING Y N 13
HMY C6 C5 DOUB Y Z 14
HMY C5 O21 SING N N 15
HMY C5 C4 SING Y N 16
HMY O21 C22 SING N N 17
HMY C4 C3 DOUB Y N 18
HMY C3 C18 SING N N 19
HMY C18 O31 SING N N 20
HMY C18 C17 SING N N 21
HMY O31 C17 SING N N 22
HMY C17 C16 SING N N 23
HMY C16 C15 SING N N 24
HMY C15 O29 SING N N 25
HMY C15 C14 SING N N 26
HMY C14 O28 SING N N 27
HMY C14 C13 SING N N 28
HMY C13 O24 DOUB N N 29
HMY C9 H9 SING N N 30
HMY C25 H25 SING N N 31
HMY C25 H25A SING N N 32
HMY C25 H25B SING N N 33
HMY C10 H10 SING N N 34
HMY C10 H10A SING N N 35
HMY C11 H11 SING N N 36
HMY C12 H12 SING N N 37
HMY O20 HO20 SING N N 38
HMY C6 H6 SING N N 39
HMY C22 H22 SING N N 40
HMY C22 H22A SING N N 41
HMY C22 H22B SING N N 42
HMY C4 H4 SING N N 43
HMY C18 H18 SING N N 44
HMY C17 H17 SING N N 45
HMY C16 H16 SING N N 46
HMY C16 H16A SING N N 47
HMY C15 H15 SING N N 48
HMY O29 HO29 SING N N 49
HMY C14 H14 SING N N 50
HMY O28 HO28 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HMY SMILES ACDLabs 10.04 'O=C3C=CCC(OC(=O)c1c(cc(OC)cc1O)C2OC2CC(O)C3O)C'
HMY SMILES_CANONICAL CACTVS 3.341 'COc1cc(O)c2C(=O)O[C@@H](C)C\C=C/C(=O)[C@@H](O)[C@@H](O)C[C@H]3O[C@@H]3c2c1'
HMY SMILES CACTVS 3.341 'COc1cc(O)c2C(=O)O[CH](C)CC=CC(=O)[CH](O)[CH](O)C[CH]3O[CH]3c2c1'
HMY SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'C[C@H]1CC=CC(=O)[C@H]([C@H](C[C@@H]2[C@H](O2)c3cc(cc(c3C(=O)O1)O)OC)O)O'
HMY SMILES 'OpenEye OEToolkits' 1.5.0 'CC1CC=CC(=O)C(C(CC2C(O2)c3cc(cc(c3C(=O)O1)O)OC)O)O'
HMY InChI InChI 1.03 'InChI=1S/C19H22O8/c1-9-4-3-5-12(20)17(23)14(22)8-15-18(27-15)11-6-10(25-2)7-13(21)16(11)19(24)26-9/h3,5-7,9,14-15,17-18,21-23H,4,8H2,1-2H3/t9-,14-,15+,17+,18+/m0/s1'
HMY InChIKey InChI 1.03 SSNQAUBBJYCSMY-LWQPPDATSA-N
#
_pdbx_chem_comp_identifier.comp_id HMY
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
'(1aR,8S,10Z,13S,14S,15aR)-5,13,14-trihydroxy-3-methoxy-8-methyl-8,9,13,14,15,15a-hexahydro-6H-oxireno[k][2]benzoxacyclotetradecine-6,12(1aH)-dione'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HMY 'Create component' 2008-02-19 PDBJ
HMY 'Modify aromatic_flag' 2011-06-04 RCSB
HMY 'Modify descriptor' 2011-06-04 RCSB
HMY 'Modify synonyms' 2021-03-01 PDBE
HMY 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HMY
_pdbx_chem_comp_synonyms.name Hypothemycin
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id HMY
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C11
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 3C9W
#
_pdbe_chem_comp_synonyms.comp_id HMY
_pdbe_chem_comp_synonyms.name Hypothemycin
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HMY O23 O 3.000 1.466 1
HMY C7 C 4.299 0.716 2
HMY O8 O 4.299 -0.784 3
HMY C9 C 5.598 -1.534 4
HMY C25 C 5.598 -0.034 5
HMY C10 C 5.598 -3.034 6
HMY C11 C 6.897 -3.784 7
HMY C12 C 8.196 -3.034 8
HMY C2 C 5.598 1.466 9
HMY C1 C 5.574 3.029 10
HMY O20 O 4.266 3.763 11
HMY C6 C 6.921 3.820 12
HMY C5 C 8.274 3.039 13
HMY O21 O 9.576 3.784 14
HMY C22 C 9.582 5.284 15
HMY C4 C 8.262 1.476 16
HMY C3 C 6.897 0.716 17
HMY C18 C 6.897 -0.784 18
HMY O31 O 6.897 -2.284 19
HMY C17 C 8.196 -1.534 20
HMY C16 C 9.495 -0.784 21
HMY C15 C 10.794 -1.534 22
HMY O29 O 12.093 -0.784 23
HMY C14 C 10.794 -3.034 24
HMY O28 O 12.093 -3.784 25
HMY C13 C 9.495 -3.784 26
HMY O24 O 9.495 -5.284 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HMY O23 C7 DOUBLE NONE 1
HMY C7 O8 SINGLE NONE 2
HMY C7 C2 SINGLE NONE 3
HMY O8 C9 SINGLE NONE 4
HMY C9 C25 SINGLE BEGINWEDGE 5
HMY C9 C10 SINGLE NONE 6
HMY C10 C11 SINGLE ENDUPRIGHT 7
HMY C11 C12 DOUBLE NONE 8
HMY C12 C13 SINGLE ENDDOWNRIGHT 9
HMY C2 C1 DOUBLE NONE 10
HMY C2 C3 SINGLE NONE 11
HMY C1 O20 SINGLE NONE 12
HMY C1 C6 SINGLE NONE 13
HMY C6 C5 DOUBLE NONE 14
HMY C5 O21 SINGLE NONE 15
HMY C5 C4 SINGLE NONE 16
HMY O21 C22 SINGLE NONE 17
HMY C4 C3 DOUBLE NONE 18
HMY C3 C18 SINGLE NONE 19
HMY C18 O31 SINGLE NONE 20
HMY C18 C17 SINGLE NONE 21
HMY O31 C17 SINGLE NONE 22
HMY C17 C16 SINGLE NONE 23
HMY C16 C15 SINGLE NONE 24
HMY C15 O29 SINGLE BEGINDASH 25
HMY C15 C14 SINGLE NONE 26
HMY C14 O28 SINGLE BEGINDASH 27
HMY C14 C13 SINGLE NONE 28
HMY C13 O24 DOUBLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HMY MurckoScaffold S1 scaffold 'O=C1/C=C\CCOC(=O)c2ccccc2[C@H]2O[C@@H]2CCC1' InChI=1S/C17H18O4/c18-12-6-3-4-11-20-17(19)14-9-2-1-8-13(14)16-15(21-16)10-5-7-12/h1-3,6,8-9,15-16H,4-5,7,10-11H2/b6-3-/t15-,16-/m1/s1 ZJHREJHIJLAKLM-MCIOBPLBSA-N
HMY phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HMY O23 S1 1
HMY C7 S1 1
HMY O8 S1 1
HMY C9 S1 1
HMY C10 S1 1
HMY C11 S1 1
HMY C12 S1 1
HMY C2 S1 1
HMY C1 S1 1
HMY C6 S1 1
HMY C5 S1 1
HMY C4 S1 1
HMY C3 S1 1
HMY C18 S1 1
HMY O31 S1 1
HMY C17 S1 1
HMY C16 S1 1
HMY C15 S1 1
HMY C14 S1 1
HMY C13 S1 1
HMY O24 S1 1
HMY C2 F1 1
HMY C1 F1 1
HMY C6 F1 1
HMY C5 F1 1
HMY C4 F1 1
HMY C3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HMY
_pdbe_chem_comp_rdkit_properties.exactmw 378.131
_pdbe_chem_comp_rdkit_properties.amw 378.377
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.474
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 186.690
_pdbe_chem_comp_rdkit_properties.tpsa 125.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.007
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.793
_pdbe_chem_comp_rdkit_properties.chi0v 12.766
_pdbe_chem_comp_rdkit_properties.chi1v 6.745
_pdbe_chem_comp_rdkit_properties.chi2v 3.031
_pdbe_chem_comp_rdkit_properties.chi3v 3.031
_pdbe_chem_comp_rdkit_properties.chi4v 1.860
_pdbe_chem_comp_rdkit_properties.chi0n 34.766
_pdbe_chem_comp_rdkit_properties.chi1n 17.470
_pdbe_chem_comp_rdkit_properties.chi2n 3.031
_pdbe_chem_comp_rdkit_properties.chi3n 3.031
_pdbe_chem_comp_rdkit_properties.chi4n 1.860
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.420
_pdbe_chem_comp_rdkit_properties.kappa1 5.791
_pdbe_chem_comp_rdkit_properties.kappa2 7.674
_pdbe_chem_comp_rdkit_properties.kappa3 4.127
_pdbe_chem_comp_rdkit_properties.Phi 1.646
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HMY UniChem PDBe HMY
HMY UniChem ZINC ZINC000253667891
HMY UniChem PubChem 131676399
HMY UniChem 'Probes And Drugs' PD085730
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HMY O23 0.739 -0.383 2.505 ETKDGv3 1
HMY C7 0.987 0.425 1.568 ETKDGv3 2
HMY O8 0.191 1.566 1.382 ETKDGv3 3
HMY C9 -1.154 1.677 1.864 ETKDGv3 4
HMY C25 -1.447 3.141 2.190 ETKDGv3 5
HMY C10 -2.119 1.146 0.784 ETKDGv3 6
HMY C11 -3.452 0.714 1.323 ETKDGv3 7
HMY C12 -4.445 0.168 0.597 ETKDGv3 8
HMY C2 2.127 0.162 0.664 ETKDGv3 9
HMY C1 3.172 1.024 0.640 ETKDGv3 10
HMY O20 3.224 2.164 1.449 ETKDGv3 11
HMY C6 4.327 0.768 -0.243 ETKDGv3 12
HMY C5 4.368 -0.323 -1.026 ETKDGv3 13
HMY O21 5.452 -0.610 -1.871 ETKDGv3 14
HMY C22 6.619 0.198 -1.997 ETKDGv3 15
HMY C4 3.232 -1.262 -1.015 ETKDGv3 16
HMY C3 2.159 -1.059 -0.232 ETKDGv3 17
HMY C18 1.008 -2.038 -0.402 ETKDGv3 18
HMY O31 -0.118 -1.717 0.365 ETKDGv3 19
HMY C17 -0.208 -1.443 -1.017 ETKDGv3 20
HMY C16 -1.310 -2.322 -1.622 ETKDGv3 21
HMY C15 -2.711 -1.953 -1.052 ETKDGv3 22
HMY O29 -3.587 -3.045 -1.191 ETKDGv3 23
HMY C14 -3.347 -0.686 -1.702 ETKDGv3 24
HMY O28 -2.397 0.305 -1.982 ETKDGv3 25
HMY C13 -4.482 -0.109 -0.868 ETKDGv3 26
HMY O24 -5.579 0.097 -1.454 ETKDGv3 27
HMY H9 -1.267 1.089 2.803 ETKDGv3 28
HMY H25 -0.750 3.493 2.980 ETKDGv3 29
HMY H25A -2.487 3.253 2.562 ETKDGv3 30
HMY H25B -1.311 3.775 1.289 ETKDGv3 31
HMY H10 -2.260 1.906 -0.014 ETKDGv3 32
HMY H10A -1.649 0.260 0.355 ETKDGv3 33
HMY H11 -3.643 0.870 2.379 ETKDGv3 34
HMY H12 -5.374 -0.014 1.123 ETKDGv3 35
HMY HO20 2.512 2.406 2.127 ETKDGv3 36
HMY H6 5.143 1.478 -0.233 ETKDGv3 37
HMY H22 6.346 1.210 -2.363 ETKDGv3 38
HMY H22A 7.306 -0.271 -2.732 ETKDGv3 39
HMY H22B 7.141 0.271 -1.020 ETKDGv3 40
HMY H4 3.268 -2.116 -1.681 ETKDGv3 41
HMY H18 1.175 -3.133 -0.487 ETKDGv3 42
HMY H17 -0.168 -0.357 -1.239 ETKDGv3 43
HMY H16 -1.097 -3.391 -1.401 ETKDGv3 44
HMY H16A -1.305 -2.205 -2.727 ETKDGv3 45
HMY H15 -2.604 -1.789 0.040 ETKDGv3 46
HMY HO29 -3.624 -3.281 -2.155 ETKDGv3 47
HMY H14 -3.774 -1.017 -2.679 ETKDGv3 48
HMY HO28 -2.827 0.957 -2.596 ETKDGv3 49
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