data_HP1
#
_chem_comp.id HP1
_chem_comp.name
~{N}-[5-[[5-[[5-[[3-[3-(dimethylamino)propylamino]-3-oxidanylidene-propyl]carbamoyl]-1-methyl-pyrrol-3-yl]carbamoyl]-1-methyl-pyrrol-3-yl]carbamoyl]-1-methyl-4-oxidanyl-pyrrol-3-yl]-1-methyl-imidazole-2-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H41 N11 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "IMIDAZOLE-HYDROXYPYRROLE-PYRROLE-PYRROLE-BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 663.727
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HP1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 407D
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HP1 C C1 C 0 1 Y N N N N N 10.287 -3.892 15.739 8.112 -0.444 0.094 C HP1 1
HP1 C1 C2 C 0 1 Y N N N N N 13.132 -7.731 11.026 1.633 -0.436 0.068 C1 HP1 2
HP1 C2 C3 C 0 1 Y N N N N N 9.876 -4.885 16.624 7.982 -0.979 1.334 C2 HP1 3
HP1 C3 C4 C 0 1 N N N N N N 9.819 -7.414 16.889 6.107 -1.629 2.876 C3 HP1 4
HP1 C4 C5 C 0 1 Y N N N N N 10.764 -5.947 14.873 5.923 -0.617 0.561 C4 HP1 5
HP1 C5 C6 C 0 1 N N N N N N 11.164 -7.016 13.987 4.509 -0.562 0.475 C5 HP1 6
HP1 C6 C7 C 0 1 Y N N N N N 12.153 -7.810 11.969 2.418 -1.593 -0.035 C6 HP1 7
HP1 C8 C8 C 0 1 Y N N N N N 11.529 -9.058 11.833 1.595 -2.625 -0.356 C8 HP1 8
HP1 C9 C9 C 0 1 N N N N N N 11.672 -11.105 10.397 -0.859 -2.957 -0.783 C9 HP1 9
HP1 C10 C10 C 0 1 Y N N N N N 13.118 -8.895 10.311 0.330 -0.806 -0.192 C10 HP1 10
HP1 C11 C11 C 0 1 N N N N N N 14.002 -9.181 9.223 -0.838 0.082 -0.196 C11 HP1 11
HP1 C12 C12 C 0 1 Y N N N N N 15.706 -8.360 7.658 -1.800 2.247 0.079 C12 HP1 12
HP1 C13 C13 C 0 1 Y N N N N N 16.648 -7.403 7.208 -3.141 1.842 0.028 C13 HP1 13
HP1 C14 C14 C 0 1 Y N N N N N 15.804 -9.462 6.798 -1.781 3.595 0.256 C14 HP1 14
HP1 C15 C15 C 0 1 N N N N N N 17.050 -10.205 4.761 -3.468 5.443 0.489 C15 HP1 15
HP1 C16 C16 C 0 1 Y N N N N N 17.245 -7.982 6.050 -3.914 2.975 0.172 C16 HP1 16
HP1 C18 C17 C 0 1 N N N N N N 23.654 -2.971 3.312 -11.797 -0.511 -0.241 C18 HP1 17
HP1 C19 C18 C 0 1 N N N N N N 25.167 -3.382 3.217 -12.360 -1.934 -0.269 C19 HP1 18
HP1 C20 C19 C 0 1 N N N N N N 25.894 -2.918 1.893 -13.885 -1.877 -0.377 C20 HP1 19
HP1 C21 C20 C 0 1 N N N N N N 28.305 -2.768 2.456 -14.191 -3.926 0.875 C21 HP1 20
HP1 C22 C21 C 0 1 N N N N N N 27.697 -3.342 0.160 -15.855 -3.236 -0.743 C22 HP1 21
HP1 C23 C22 C 0 1 N N N N N N 18.254 -7.496 5.343 -5.379 3.028 0.180 C23 HP1 22
HP1 C24 C23 C 0 1 N N N N N N 9.682 -1.954 17.040 10.497 -0.446 0.034 C24 HP1 23
HP1 C25 C24 C 0 1 Y N N N N N 9.487 -0.546 17.138 11.766 -0.160 -0.659 C25 HP1 24
HP1 C26 C25 C 0 1 Y N N N N N 9.323 1.552 16.604 13.179 0.471 -2.164 C26 HP1 25
HP1 C27 C26 C 0 1 Y N N N N N 8.990 1.435 17.916 13.904 0.012 -1.114 C27 HP1 26
HP1 C28 C27 C 0 1 N N N N N N 8.828 -0.357 19.687 13.346 -0.961 1.146 C28 HP1 27
HP1 C29 C28 C 0 1 N N N N N N 20.274 -6.318 5.154 -7.556 1.941 0.036 C29 HP1 28
HP1 C30 C29 C 0 1 N N N N N N 20.807 -4.870 5.293 -8.118 0.519 0.009 C30 HP1 29
HP1 C31 C30 C 0 1 N N N N N N 21.724 -4.389 4.161 -9.621 0.575 -0.097 C31 HP1 30
HP1 C32 C31 C 0 1 Y N N N N N 10.840 -4.530 14.651 6.820 -0.204 -0.410 C32 HP1 31
HP1 O1 O1 O 0 1 N N N N N N 10.816 -8.161 14.255 3.926 0.486 0.687 O1 HP1 32
HP1 O2 O2 O 0 1 N N N N N N 13.959 -10.313 8.732 -1.953 -0.380 -0.351 O2 HP1 33
HP1 O3 O3 O 0 1 N N N N N N 18.518 -8.019 4.242 -5.949 4.102 0.224 O3 HP1 34
HP1 O4 O4 O 0 1 N N N N N N 9.360 -2.641 18.008 10.510 -0.929 1.150 O4 HP1 35
HP1 O5 O5 O 0 1 N N N N N N 21.510 -4.843 3.030 -10.186 1.647 -0.146 O5 HP1 36
HP1 O6 O6 O 0 1 N N N N N N 11.375 -3.858 13.537 6.511 0.327 -1.622 O6 HP1 37
HP1 N N1 N 0 1 Y N N N N N 10.151 -6.145 16.120 6.660 -1.092 1.630 N HP1 38
HP1 N1 N2 N 0 1 N N N N N N 11.840 -6.794 12.866 3.810 -1.670 0.158 N1 HP1 39
HP1 N3 N3 N 0 1 Y N N N N N 12.125 -9.747 10.800 0.324 -2.156 -0.457 N3 HP1 40
HP1 N4 N4 N 0 1 N N N N N N 14.826 -8.207 8.738 -0.675 1.409 -0.027 N4 HP1 41
HP1 N5 N5 N 0 1 Y N N N N N 16.751 -9.225 5.846 -3.062 4.046 0.311 N5 HP1 42
HP1 N6 N6 N 0 1 N N N N N N 22.757 -3.541 4.365 -10.337 -0.566 -0.138 N6 HP1 43
HP1 N7 N7 N 0 1 N N N N N N 27.302 -3.371 1.575 -14.425 -3.242 -0.403 N7 HP1 44
HP1 N8 N8 N 0 1 N N N N N N 10.157 -2.504 15.890 9.323 -0.171 -0.568 N8 HP1 45
HP1 N9 N9 N 0 1 Y N N N N N 9.094 0.120 18.282 13.019 -0.390 -0.163 N9 HP1 46
HP1 N10 N10 N 0 1 Y N N N N N 9.633 0.323 16.108 11.887 0.354 -1.865 N10 HP1 47
HP1 N11 N11 N 0 1 N N N N N N 19.105 -6.636 5.914 -6.095 1.887 0.140 N11 HP1 48
HP1 H1 H1 H 0 1 N N N N N N 13.800 -6.897 10.871 1.981 0.557 0.310 H1 HP1 49
HP1 H2 H2 H 0 1 N N N N N N 9.405 -4.697 17.578 8.797 -1.268 1.981 H2 HP1 50
HP1 H3 H3 H 0 1 N N N N N N 9.335 -7.150 17.841 5.876 -2.686 2.746 H3 HP1 51
HP1 H4 H4 H 0 1 N N N N N N 9.138 -8.037 16.291 6.837 -1.513 3.678 H4 HP1 52
HP1 H5 H5 H 0 1 N N N N N N 10.745 -7.973 17.091 5.197 -1.087 3.134 H5 HP1 53
HP1 H6 H6 H 0 1 N N N N N N 10.713 -9.421 12.440 1.901 -3.650 -0.506 H6 HP1 54
HP1 H7 H7 H 0 1 N N N N N N 10.848 -11.427 11.051 -1.062 -2.886 -1.852 H7 HP1 55
HP1 H8 H8 H 0 1 N N N N N N 11.323 -11.081 9.354 -0.677 -3.998 -0.517 H8 HP1 56
HP1 H9 H9 H 0 1 N N N N N N 12.509 -11.813 10.487 -1.716 -2.583 -0.224 H9 HP1 57
HP1 H10 H10 H 0 1 N N N N N N 16.867 -6.441 7.648 -3.501 0.831 -0.100 H10 HP1 58
HP1 H11 H11 H 0 1 N N N N N N 15.217 -10.365 6.877 -0.895 4.206 0.338 H11 HP1 59
HP1 H12 H12 H 0 1 N N N N N N 16.458 -11.119 4.918 -3.488 5.682 1.553 H12 HP1 60
HP1 H13 H13 H 0 1 N N N N N N 16.791 -9.764 3.787 -2.756 6.095 -0.016 H13 HP1 61
HP1 H14 H14 H 0 1 N N N N N N 18.121 -10.455 4.778 -4.461 5.589 0.065 H14 HP1 62
HP1 H15 H15 H 0 1 N N N N N N 23.636 -1.879 3.446 -12.077 0.008 -1.158 H15 HP1 63
HP1 H16 H16 H 0 1 N N N N N N 23.200 -3.229 2.344 -12.202 0.023 0.618 H16 HP1 64
HP1 H17 H17 H 0 1 N N N N N N 25.229 -4.479 3.276 -11.955 -2.468 -1.128 H17 HP1 65
HP1 H18 H18 H 0 1 N N N N N N 25.697 -2.939 4.073 -12.080 -2.453 0.647 H18 HP1 66
HP1 H19 H19 H 0 1 N N N N N N 25.918 -1.819 1.919 -14.290 -1.342 0.483 H19 HP1 67
HP1 H20 H20 H 0 1 N N N N N N 25.262 -3.251 1.057 -14.165 -1.357 -1.293 H20 HP1 68
HP1 H21 H21 H 0 1 N N N N N N 27.956 -2.818 3.498 -14.538 -4.957 0.805 H21 HP1 69
HP1 H22 H22 H 0 1 N N N N N N 29.254 -3.316 2.360 -13.125 -3.916 1.102 H22 HP1 70
HP1 H23 H23 H 0 1 N N N N N N 28.459 -1.717 2.171 -14.736 -3.413 1.668 H23 HP1 71
HP1 H24 H24 H 0 1 N N N N N N 28.735 -3.692 0.061 -15.993 -2.787 -1.726 H24 HP1 72
HP1 H25 H25 H 0 1 N N N N N N 27.032 -3.999 -0.420 -16.229 -4.260 -0.755 H25 HP1 73
HP1 H26 H26 H 0 1 N N N N N N 27.619 -2.313 -0.221 -16.402 -2.658 0.002 H26 HP1 74
HP1 H27 H27 H 0 1 N N N N N N 9.339 2.475 16.043 13.581 0.864 -3.085 H27 HP1 75
HP1 H28 H28 H 0 1 N N N N N N 8.692 2.246 18.564 14.981 -0.028 -1.047 H28 HP1 76
HP1 H29 H29 H 0 1 N N N N N N 8.531 0.496 20.314 13.416 -2.045 1.062 H29 HP1 77
HP1 H30 H30 H 0 1 N N N N N N 8.019 -1.102 19.674 14.300 -0.560 1.488 H30 HP1 78
HP1 H31 H31 H 0 1 N N N N N N 9.740 -0.814 20.098 12.565 -0.701 1.861 H31 HP1 79
HP1 H32 H32 H 0 1 N N N N N N 20.041 -6.490 4.093 -7.836 2.461 -0.880 H32 HP1 80
HP1 H33 H33 H 0 1 N N N N N N 21.076 -7.002 5.469 -7.961 2.476 0.896 H33 HP1 81
HP1 H34 H34 H 0 1 N N N N N N 21.371 -4.806 6.235 -7.713 -0.015 -0.851 H34 HP1 82
HP1 H35 H35 H 0 1 N N N N N N 19.941 -4.193 5.337 -7.838 -0.001 0.925 H35 HP1 83
HP1 H36 H36 H 0 1 N N N N N N 11.291 -2.920 13.662 6.431 1.291 -1.619 H36 HP1 84
HP1 H37 H37 H 0 1 N N N N N N 12.135 -5.861 12.659 4.266 -2.521 0.064 H37 HP1 85
HP1 H38 H38 H 0 1 N N N N N N 14.800 -7.315 9.188 0.217 1.787 0.020 H38 HP1 86
HP1 H39 H39 H 0 1 N N N N N N 22.939 -3.269 5.310 -9.885 -1.423 -0.099 H39 HP1 87
HP1 H41 H41 H 0 1 N N N N N N 10.420 -1.904 15.134 9.314 0.214 -1.458 H41 HP1 88
HP1 H42 H42 H 0 1 N N N N N N 18.934 -6.240 6.816 -5.643 1.029 0.178 H42 HP1 89
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HP1 C22 N7 SING N N 1
HP1 N7 C20 SING N N 2
HP1 N7 C21 SING N N 3
HP1 C20 C19 SING N N 4
HP1 O5 C31 DOUB N N 5
HP1 C19 C18 SING N N 6
HP1 C18 N6 SING N N 7
HP1 C31 N6 SING N N 8
HP1 C31 C30 SING N N 9
HP1 O3 C23 DOUB N N 10
HP1 C15 N5 SING N N 11
HP1 C29 C30 SING N N 12
HP1 C29 N11 SING N N 13
HP1 C23 N11 SING N N 14
HP1 C23 C16 SING N N 15
HP1 N5 C16 SING Y N 16
HP1 N5 C14 SING Y N 17
HP1 C16 C13 DOUB Y N 18
HP1 C14 C12 DOUB Y N 19
HP1 C13 C12 SING Y N 20
HP1 C12 N4 SING N N 21
HP1 O2 C11 DOUB N N 22
HP1 N4 C11 SING N N 23
HP1 C11 C10 SING N N 24
HP1 C10 N3 SING Y N 25
HP1 C10 C1 DOUB Y N 26
HP1 C9 N3 SING N N 27
HP1 N3 C8 SING Y N 28
HP1 C1 C6 SING Y N 29
HP1 C8 C6 DOUB Y N 30
HP1 C6 N1 SING N N 31
HP1 N1 C5 SING N N 32
HP1 O6 C32 SING N N 33
HP1 C5 O1 DOUB N N 34
HP1 C5 C4 SING N N 35
HP1 C32 C4 DOUB Y N 36
HP1 C32 C SING Y N 37
HP1 C4 N SING Y N 38
HP1 C N8 SING N N 39
HP1 C C2 DOUB Y N 40
HP1 N8 C24 SING N N 41
HP1 N10 C26 SING Y N 42
HP1 N10 C25 DOUB Y N 43
HP1 N C2 SING Y N 44
HP1 N C3 SING N N 45
HP1 C26 C27 DOUB Y N 46
HP1 C24 C25 SING N N 47
HP1 C24 O4 DOUB N N 48
HP1 C25 N9 SING Y N 49
HP1 C27 N9 SING Y N 50
HP1 N9 C28 SING N N 51
HP1 C1 H1 SING N N 52
HP1 C2 H2 SING N N 53
HP1 C3 H3 SING N N 54
HP1 C3 H4 SING N N 55
HP1 C3 H5 SING N N 56
HP1 C8 H6 SING N N 57
HP1 C9 H7 SING N N 58
HP1 C9 H8 SING N N 59
HP1 C9 H9 SING N N 60
HP1 C13 H10 SING N N 61
HP1 C14 H11 SING N N 62
HP1 C15 H12 SING N N 63
HP1 C15 H13 SING N N 64
HP1 C15 H14 SING N N 65
HP1 C18 H15 SING N N 66
HP1 C18 H16 SING N N 67
HP1 C19 H17 SING N N 68
HP1 C19 H18 SING N N 69
HP1 C20 H19 SING N N 70
HP1 C20 H20 SING N N 71
HP1 C21 H21 SING N N 72
HP1 C21 H22 SING N N 73
HP1 C21 H23 SING N N 74
HP1 C22 H24 SING N N 75
HP1 C22 H25 SING N N 76
HP1 C22 H26 SING N N 77
HP1 C26 H27 SING N N 78
HP1 C27 H28 SING N N 79
HP1 C28 H29 SING N N 80
HP1 C28 H30 SING N N 81
HP1 C28 H31 SING N N 82
HP1 C29 H32 SING N N 83
HP1 C29 H33 SING N N 84
HP1 C30 H34 SING N N 85
HP1 C30 H35 SING N N 86
HP1 O6 H36 SING N N 87
HP1 N1 H37 SING N N 88
HP1 N4 H38 SING N N 89
HP1 N6 H39 SING N N 90
HP1 N8 H41 SING N N 91
HP1 N11 H42 SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HP1 InChI InChI 1.03 InChI=1S/C31H41N11O6/c1-38(2)12-7-9-32-24(43)8-10-34-28(45)22-14-19(16-40(22)4)35-29(46)23-15-20(17-41(23)5)36-30(47)25-26(44)21(18-42(25)6)37-31(48)27-33-11-13-39(27)3/h11,13-18,44H,7-10,12H2,1-6H3,(H,32,43)(H,34,45)(H,35,46)(H,36,47)(H,37,48)
HP1 InChIKey InChI 1.03 LNQWOHIRWNQTSI-UHFFFAOYSA-N
HP1 SMILES_CANONICAL CACTVS 3.385 CN(C)CCCNC(=O)CCNC(=O)c1cc(NC(=O)c2cc(NC(=O)c3n(C)cc(NC(=O)c4nccn4C)c3O)cn2C)cn1C
HP1 SMILES CACTVS 3.385 CN(C)CCCNC(=O)CCNC(=O)c1cc(NC(=O)c2cc(NC(=O)c3n(C)cc(NC(=O)c4nccn4C)c3O)cn2C)cn1C
HP1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cn1ccnc1C(=O)Nc2cn(c(c2O)C(=O)Nc3cc(n(c3)C)C(=O)Nc4cc(n(c4)C)C(=O)NCCC(=O)NCCCN(C)C)C
HP1 SMILES "OpenEye OEToolkits" 2.0.6 Cn1ccnc1C(=O)Nc2cn(c(c2O)C(=O)Nc3cc(n(c3)C)C(=O)Nc4cc(n(c4)C)C(=O)NCCC(=O)NCCCN(C)C)C
#
_pdbx_chem_comp_identifier.comp_id HP1
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
~{N}-[5-[[5-[[5-[[3-[3-(dimethylamino)propylamino]-3-oxidanylidene-propyl]carbamoyl]-1-methyl-pyrrol-3-yl]carbamoyl]-1-methyl-pyrrol-3-yl]carbamoyl]-1-methyl-4-oxidanyl-pyrrol-3-yl]-1-methyl-imidazole-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HP1 'Create component' 1999-07-08 RCSB
HP1 'Modify descriptor' 2011-06-04 RCSB
HP1 'Other modification' 2018-09-17 RCSB
HP1 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HP1
_pdbx_chem_comp_synonyms.name "IMIDAZOLE-HYDROXYPYRROLE-PYRROLE-PYRROLE-BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id HP1
_pdbe_chem_comp_synonyms.name 'IMIDAZOLE-HYDROXYPYRROLE-PYRROLE-PYRROLE-BETA ALANINE-DIMETHYLAMINO PROPYLAMIDE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HP1 C C 14.636 9.762 1
HP1 C1 C 9.043 4.515 2
HP1 C2 C 15.099 8.336 3
HP1 C3 C 13.886 5.954 4
HP1 C4 C 12.672 8.336 5
HP1 C5 C 11.245 7.872 6
HP1 C6 C 9.507 5.941 7
HP1 C8 C 8.293 6.823 8
HP1 C9 C 5.653 6.405 9
HP1 C10 C 7.543 4.515 10
HP1 C11 C 6.662 3.301 11
HP1 C12 C 6.390 0.718 12
HP1 C13 C 6.854 -0.709 13
HP1 C14 C 4.890 0.718 14
HP1 C15 C 3.000 -1.173 15
HP1 C16 C 5.640 -1.591 16
HP1 C18 C 9.537 -9.841 17
HP1 C19 C 10.836 -10.591 18
HP1 C20 C 10.836 -12.091 19
HP1 C21 C 13.434 -12.091 20
HP1 C22 C 12.135 -14.341 21
HP1 C23 C 5.640 -3.091 22
HP1 C24 C 17.009 10.819 23
HP1 C25 C 17.891 12.033 24
HP1 C26 C 18.641 14.341 25
HP1 C27 C 19.854 13.459 26
HP1 C28 C 20.272 10.819 27
HP1 C29 C 6.939 -5.341 28
HP1 C30 C 8.238 -6.091 29
HP1 C31 C 8.238 -7.591 30
HP1 C32 C 13.136 9.762 31
HP1 O1 O 10.131 8.876 32
HP1 O2 O 5.170 3.458 33
HP1 O3 O 4.341 -3.841 34
HP1 O4 O 17.619 9.449 35
HP1 O5 O 6.939 -8.341 36
HP1 O6 O 12.254 10.976 37
HP1 N N 13.886 7.454 38
HP1 N1 N 10.934 6.405 39
HP1 N3 N 7.080 5.941 40
HP1 N4 N 7.272 1.931 41
HP1 N5 N 4.427 -0.709 42
HP1 N6 N 9.537 -8.341 43
HP1 N7 N 12.135 -12.841 44
HP1 N8 N 15.517 10.976 45
HP1 N9 N 19.391 12.033 46
HP1 N10 N 17.427 13.459 47
HP1 N11 N 6.939 -3.841 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HP1 C22 N7 SINGLE NONE 1
HP1 N7 C20 SINGLE NONE 2
HP1 N7 C21 SINGLE NONE 3
HP1 C20 C19 SINGLE NONE 4
HP1 O5 C31 DOUBLE NONE 5
HP1 C19 C18 SINGLE NONE 6
HP1 C18 N6 SINGLE NONE 7
HP1 C31 N6 SINGLE NONE 8
HP1 C31 C30 SINGLE NONE 9
HP1 O3 C23 DOUBLE NONE 10
HP1 C15 N5 SINGLE NONE 11
HP1 C29 C30 SINGLE NONE 12
HP1 C29 N11 SINGLE NONE 13
HP1 C23 N11 SINGLE NONE 14
HP1 C23 C16 SINGLE NONE 15
HP1 N5 C16 SINGLE NONE 16
HP1 N5 C14 SINGLE NONE 17
HP1 C16 C13 DOUBLE NONE 18
HP1 C14 C12 DOUBLE NONE 19
HP1 C13 C12 SINGLE NONE 20
HP1 C12 N4 SINGLE NONE 21
HP1 O2 C11 DOUBLE NONE 22
HP1 N4 C11 SINGLE NONE 23
HP1 C11 C10 SINGLE NONE 24
HP1 C10 N3 SINGLE NONE 25
HP1 C10 C1 DOUBLE NONE 26
HP1 C9 N3 SINGLE NONE 27
HP1 N3 C8 SINGLE NONE 28
HP1 C1 C6 SINGLE NONE 29
HP1 C8 C6 DOUBLE NONE 30
HP1 C6 N1 SINGLE NONE 31
HP1 N1 C5 SINGLE NONE 32
HP1 O6 C32 SINGLE NONE 33
HP1 C5 O1 DOUBLE NONE 34
HP1 C5 C4 SINGLE NONE 35
HP1 C32 C4 DOUBLE NONE 36
HP1 C32 C SINGLE NONE 37
HP1 C4 N SINGLE NONE 38
HP1 C N8 SINGLE NONE 39
HP1 C C2 DOUBLE NONE 40
HP1 N8 C24 SINGLE NONE 41
HP1 N10 C26 SINGLE NONE 42
HP1 N10 C25 DOUBLE NONE 43
HP1 N C2 SINGLE NONE 44
HP1 N C3 SINGLE NONE 45
HP1 C26 C27 DOUBLE NONE 46
HP1 C24 C25 SINGLE NONE 47
HP1 C24 O4 DOUBLE NONE 48
HP1 C25 N9 SINGLE NONE 49
HP1 C27 N9 SINGLE NONE 50
HP1 N9 C28 SINGLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HP1 MurckoScaffold S1 scaffold 'O=C(Nc1cc[nH]c1)c1cc(NC(=O)c2cc(NC(=O)c3ncc[nH]3)c[nH]2)c[nH]1' InChI=1S/C18H16N8O3/c27-16(24-10-1-2-19-7-10)13-5-11(8-22-13)25-17(28)14-6-12(9-23-14)26-18(29)15-20-3-4-21-15/h1-9,19,22-23H,(H,20,21)(H,24,27)(H,25,28)(H,26,29) IEVNJVVXRZYOTE-UHFFFAOYSA-N
HP1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HP1 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
HP1 pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HP1 C S1 1
HP1 C1 S1 1
HP1 C2 S1 1
HP1 C4 S1 1
HP1 C5 S1 1
HP1 C6 S1 1
HP1 C8 S1 1
HP1 C10 S1 1
HP1 C11 S1 1
HP1 C12 S1 1
HP1 C13 S1 1
HP1 C14 S1 1
HP1 C16 S1 1
HP1 C24 S1 1
HP1 C25 S1 1
HP1 C26 S1 1
HP1 C27 S1 1
HP1 C32 S1 1
HP1 O1 S1 1
HP1 O2 S1 1
HP1 O4 S1 1
HP1 N S1 1
HP1 N1 S1 1
HP1 N3 S1 1
HP1 N4 S1 1
HP1 N5 S1 1
HP1 N8 S1 1
HP1 N9 S1 1
HP1 N10 S1 1
HP1 N1 F1 1
HP1 C5 F1 1
HP1 O1 F1 1
HP1 C4 F1 1
HP1 N4 F1 2
HP1 C11 F1 2
HP1 O2 F1 2
HP1 C10 F1 2
HP1 N6 F1 3
HP1 C31 F1 3
HP1 O5 F1 3
HP1 C30 F1 3
HP1 N8 F1 4
HP1 C24 F1 4
HP1 O4 F1 4
HP1 C25 F1 4
HP1 N11 F1 5
HP1 C23 F1 5
HP1 O3 F1 5
HP1 C16 F1 5
HP1 C26 F2 1
HP1 C27 F2 1
HP1 N9 F2 1
HP1 C25 F2 1
HP1 N10 F2 1
HP1 C2 F3 1
HP1 C F3 1
HP1 C32 F3 1
HP1 C4 F3 1
HP1 N F3 1
HP1 C8 F3 2
HP1 C6 F3 2
HP1 C1 F3 2
HP1 C10 F3 2
HP1 N3 F3 2
HP1 C14 F3 3
HP1 C12 F3 3
HP1 C13 F3 3
HP1 C16 F3 3
HP1 N5 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id HP1
_pdbe_chem_comp_rdkit_properties.exactmw 663.324
_pdbe_chem_comp_rdkit_properties.amw 663.740
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 89
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.355
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 334.430
_pdbe_chem_comp_rdkit_properties.tpsa 201.580
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.737
_pdbe_chem_comp_rdkit_properties.CrippenMR 173.956
_pdbe_chem_comp_rdkit_properties.chi0v 22.869
_pdbe_chem_comp_rdkit_properties.chi1v 11.762
_pdbe_chem_comp_rdkit_properties.chi2v 4.904
_pdbe_chem_comp_rdkit_properties.chi3v 4.904
_pdbe_chem_comp_rdkit_properties.chi4v 3.017
_pdbe_chem_comp_rdkit_properties.chi0n 63.869
_pdbe_chem_comp_rdkit_properties.chi1n 31.906
_pdbe_chem_comp_rdkit_properties.chi2n 4.904
_pdbe_chem_comp_rdkit_properties.chi3n 4.904
_pdbe_chem_comp_rdkit_properties.chi4n 3.017
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.840
_pdbe_chem_comp_rdkit_properties.kappa1 9.621
_pdbe_chem_comp_rdkit_properties.kappa2 15.166
_pdbe_chem_comp_rdkit_properties.kappa3 8.492
_pdbe_chem_comp_rdkit_properties.Phi 3.040
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
HP1 UniChem PDBe HP1
HP1 UniChem PubChem 449490
HP1 UniChem Nikkaji J1.556.804F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HP1 C -7.975 -0.997 -0.040 ETKDGv3 1
HP1 C1 -1.465 0.505 -1.214 ETKDGv3 2
HP1 C2 -7.908 0.321 0.071 ETKDGv3 3
HP1 C3 -6.054 2.052 0.118 ETKDGv3 4
HP1 C4 -5.885 -0.400 -0.644 ETKDGv3 5
HP1 C5 -4.461 -0.413 -1.033 ETKDGv3 6
HP1 C6 -2.563 0.867 -2.114 ETKDGv3 7
HP1 C8 -2.073 1.616 -3.089 ETKDGv3 8
HP1 C9 0.183 2.674 -3.671 ETKDGv3 9
HP1 C10 -0.359 1.050 -1.716 ETKDGv3 10
HP1 C11 0.977 0.991 -1.082 ETKDGv3 11
HP1 C12 2.371 0.158 0.858 ETKDGv3 12
HP1 C13 3.195 1.343 1.106 ETKDGv3 13
HP1 C14 2.843 -0.838 1.590 ETKDGv3 14
HP1 C15 4.970 -1.276 2.927 ETKDGv3 15
HP1 C16 4.140 0.978 1.969 ETKDGv3 16
HP1 C18 8.780 0.399 0.723 ETKDGv3 17
HP1 C19 8.906 -0.251 -0.663 ETKDGv3 18
HP1 C20 7.580 -0.323 -1.445 ETKDGv3 19
HP1 C21 5.198 -0.659 -1.309 ETKDGv3 20
HP1 C22 6.670 -2.397 -0.545 ETKDGv3 21
HP1 C23 5.183 1.873 2.517 ETKDGv3 22
HP1 C24 -9.478 -3.022 -0.246 ETKDGv3 23
HP1 C25 -10.609 -3.816 0.268 ETKDGv3 24
HP1 C26 -11.884 -5.502 0.744 ETKDGv3 25
HP1 C27 -12.526 -4.446 1.209 ETKDGv3 26
HP1 C28 -12.290 -1.930 0.862 ETKDGv3 27
HP1 C29 6.430 4.091 2.471 ETKDGv3 28
HP1 C30 7.766 4.019 1.724 ETKDGv3 29
HP1 C31 8.364 2.644 1.801 ETKDGv3 30
HP1 C32 -6.662 -1.471 -0.476 ETKDGv3 31
HP1 O1 -3.700 -1.315 -0.592 ETKDGv3 32
HP1 O2 1.894 1.749 -1.496 ETKDGv3 33
HP1 O3 5.827 1.513 3.538 ETKDGv3 34
HP1 O4 -8.845 -3.449 -1.248 ETKDGv3 35
HP1 O5 8.791 2.215 2.908 ETKDGv3 36
HP1 O6 -6.295 -2.804 -0.652 ETKDGv3 37
HP1 N -6.624 0.789 -0.338 ETKDGv3 38
HP1 N1 -3.958 0.581 -1.936 ETKDGv3 39
HP1 N3 -0.666 1.752 -2.926 ETKDGv3 40
HP1 N4 1.245 0.055 -0.025 ETKDGv3 41
HP1 N5 3.969 -0.395 2.338 ETKDGv3 42
HP1 N6 8.427 1.817 0.633 ETKDGv3 43
HP1 N7 6.488 -0.939 -0.659 ETKDGv3 44
HP1 N8 -9.095 -1.788 0.381 ETKDGv3 45
HP1 N9 -11.753 -3.285 0.944 ETKDGv3 46
HP1 N10 -10.659 -5.103 0.133 ETKDGv3 47
HP1 N11 5.465 3.145 1.908 ETKDGv3 48
HP1 H1 -1.542 -0.031 -0.278 ETKDGv3 49
HP1 H2 -8.695 0.955 0.459 ETKDGv3 50
HP1 H3 -6.847 2.827 0.172 ETKDGv3 51
HP1 H4 -5.274 2.405 -0.585 ETKDGv3 52
HP1 H5 -5.608 1.918 1.126 ETKDGv3 53
HP1 H6 -2.650 2.078 -3.880 ETKDGv3 54
HP1 H7 0.393 3.572 -3.053 ETKDGv3 55
HP1 H8 1.134 2.173 -3.944 ETKDGv3 56
HP1 H9 -0.325 2.990 -4.607 ETKDGv3 57
HP1 H10 3.045 2.333 0.698 ETKDGv3 58
HP1 H11 2.461 -1.851 1.592 ETKDGv3 59
HP1 H12 4.573 -2.310 3.008 ETKDGv3 60
HP1 H13 5.232 -0.926 3.946 ETKDGv3 61
HP1 H14 5.879 -1.289 2.290 ETKDGv3 62
HP1 H15 9.760 0.304 1.239 ETKDGv3 63
HP1 H16 8.022 -0.135 1.334 ETKDGv3 64
HP1 H17 9.645 0.322 -1.265 ETKDGv3 65
HP1 H18 9.324 -1.273 -0.544 ETKDGv3 66
HP1 H19 7.750 -0.882 -2.393 ETKDGv3 67
HP1 H20 7.302 0.713 -1.738 ETKDGv3 68
HP1 H21 4.986 0.432 -1.278 ETKDGv3 69
HP1 H22 5.195 -1.003 -2.367 ETKDGv3 70
HP1 H23 4.371 -1.167 -0.770 ETKDGv3 71
HP1 H24 5.820 -2.849 0.012 ETKDGv3 72
HP1 H25 6.739 -2.878 -1.546 ETKDGv3 73
HP1 H26 7.583 -2.631 0.040 ETKDGv3 74
HP1 H27 -12.242 -6.522 0.787 ETKDGv3 75
HP1 H28 -13.501 -4.453 1.678 ETKDGv3 76
HP1 H29 -11.980 -1.352 1.757 ETKDGv3 77
HP1 H30 -13.400 -1.958 0.826 ETKDGv3 78
HP1 H31 -11.924 -1.425 -0.057 ETKDGv3 79
HP1 H32 6.022 5.119 2.374 ETKDGv3 80
HP1 H33 6.587 3.903 3.555 ETKDGv3 81
HP1 H34 7.610 4.314 0.664 ETKDGv3 82
HP1 H35 8.474 4.747 2.175 ETKDGv3 83
HP1 H36 -5.386 -3.075 -1.005 ETKDGv3 84
HP1 H37 -4.646 1.105 -2.524 ETKDGv3 85
HP1 H38 0.631 -0.784 0.069 ETKDGv3 86
HP1 H39 8.217 2.248 -0.295 ETKDGv3 87
HP1 H41 -9.679 -1.410 1.158 ETKDGv3 88
HP1 H42 5.068 3.367 0.968 ETKDGv3 89
#